BAC Information

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BAC

Clone NameB6Ng01-154D13
Chromosome9 (Build37)
Map Location 55,330,045 - 55,331,372
singlet/doubletsinglet
Overlap geneEtfa
Upstream geneDmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078
Downstream geneLOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3, C230081A13Rik, Hmg20a, LOC100039535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154D13.bB6Ng01-154D13.g
ACCDH949326DH949327
length1,1341,235
definitionDH949326|Mus musculus domesticus DNA, BAC clone: B6Ng01-154D13, 5' end.DH949327|Mus musculus domesticus DNA, BAC clone: B6Ng01-154D13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgcagggcgtattttattgcaatacttactggagctactatttt
tcctgtctgaccaacttgcatgtcattgggaacaaagccagcatcaacag
cagctcgggaagcaccaactgaaagggaggaagtgtcatattttcaagct
ctattattcagctagtgagacagtcaccaacaactacaaaataacatcct
aatattttacagtcaaaaagtattgtatacagaactcacttttgaaaaag
aaaatcctgattaatgatttgtaactgatcaaggattctaaacactaaat
acaagtacatttttcaagaaaataattttcattgtatgctatactcacaa
atttctttgtttttgtttgtttgttttgagacagggtctctctatgtagt
cctggctatcccagagctcactatgtagaccacattggccttgaactcac
agagatcctcctgtctaggctttctgcatatttgaaggcatgcaccactg
ctccaggtataaaaaatgctgtataatatcattatcttttatgatcagat
aaaatcatattcaatgcaagattgaggtttaacaagtatctcatattaaa
ttaataaataaaaatgtaactgttttcttctccacagaagatctattctt
acagcagaagcaccccttctggagagtgaagggaaggattcaagcattcc
ttctgtatactgttgcaataatttattcttcctgttgtagtttcctaaga
tgattaaacttagattgcctttcttttctaatacacatttagtactataa
atttccctataagagctcatcctggtggtacaggtctggactcctagcta
tatgggaggctgaagcaaaaggatcataaggccagaataggcaaggtatc
gagactgtctcaaagatttggatttaaaaatgaacaaataagtaaataaa
gtggggggggcgcatgtagaatagctcatagtgggttcttgcctacttgt
gagaggccttagtcactgctagcacttaggataaatccctccccatacac
tgactcactgtatcaaacaccttttttcactcagcttaaatatttcttta
atgatccttactcaagttacgagaatttgctgtt
gaattccaaaaagaaaatccaaaagaaacaaagaaagaaagcaatccagt
taataattgagctaatgaaatggatagctctcagaaatgtttaataacct
tagccaaaggggaaattcaatttaagatttcattcagaatggctatattt
aagaaaataaatggcagatgccttcaagagtgagatgggccttataccat
gttagtaggattgttaagtcaacaactgtggaaatcagtatgaagattct
tcaaaaaactaaaatagaatgtccatgtgactgagcaccactcctgggtg
tatgaacccaaaggactcttaagccattatagctcagacacatatgcaca
tctaatactattatagtgctactcactgtagccaagattatggaaccaat
taagtgtccactaccaagtaggtaaagaaactggtatatttatagagtgg
aggttattcacaaaacagaataaaggacaatggttataatttaaagattg
tcatattaaataaaataagtcagatattggctgggttaggcagttgccaa
acctgacatcctgggttaggattcacatggtggtggaagtggactgactc
tgacaggttgtcctttgactgtcacttgtatggaatgtgcatgagcttat
aaacacaccataccacacacacacacacacacacacacacacacacacac
atacatatatacatgaatgtttattttaaatggcaaatattgtatctttt
ctctcatttgtgggtccatgaaaatagagacaagactggagggatgaggt
gcatgaatgagaaaagagaatgtgcgggggacagacatgagcaaaggtat
atgataaatgtgtgtgaaatcaccatgtcaataaaaaagttaagttgaag
agaatatgtatataaaaccatttgtaatttgctgctattatagagtgaaa
tatgacataccagagtagtataggatgtatactaaagaggagtgtgaccc
aatgcagaccatcgttcatcaaaagcagccaggagaaggagggagaattc
attaagatacatttcaccttgttaaagaatggttagtttgtctgaagtta
tggattagaaggactcaaagcccattgctttcccagacaaggtctcgctc
gtgtcattgagagaagttccgcgtgtagcagacggtacccttctctggcc
cacacgctagaacctacctcaccctcaaagatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_55330045_55331372
seq2: B6Ng01-154D13.b_46_1179

seq1  GAATTCTGCAGGGCGTATTTTATTGCAATACTTACTGGAGCTACTATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGGGCGTATTTTATTGCAATACTTACTGGAGCTACTATTTT  50

seq1  TCCTGTCTGACCAACTTGCATGTCATTGGGAACAAAGCCAGCATCAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTGACCAACTTGCATGTCATTGGGAACAAAGCCAGCATCAACAG  100

seq1  CAGCTCGGGAAGCACCAACTGAAAGGGAGGAAGTGTCATATTTTCAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCGGGAAGCACCAACTGAAAGGGAGGAAGTGTCATATTTTCAAGCT  150

seq1  CTATTATTCAGCTAGTGAGACAGTCACCAACAACTACAAAATAACATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATTCAGCTAGTGAGACAGTCACCAACAACTACAAAATAACATCCT  200

seq1  AATATTTTACAGTCAAAAAGTATTGTATACAGAACTCACTTTTGAAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTACAGTCAAAAAGTATTGTATACAGAACTCACTTTTGAAAAAG  250

seq1  AAAATCCTGATTAATGATTTGTAACTGATCAAGGATTCTAAACACTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTGATTAATGATTTGTAACTGATCAAGGATTCTAAACACTAAAT  300

seq1  ACAAGTACATTTTTCAAGAAAATAATTTTCATTGTATGCTATACTCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTACATTTTTCAAGAAAATAATTTTCATTGTATGCTATACTCACAA  350

seq1  ATTTCTTTGTTTTTGTTTGTTTGTTTTGAGACAGGGTCTCTCTATGTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTGTTTTTGTTTGTTTGTTTTGAGACAGGGTCTCTCTATGTAGT  400

seq1  CCTGGCTATCCCAGAGCTCACTATGTAGACCACATTGGCCTTGAACTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTATCCCAGAGCTCACTATGTAGACCACATTGGCCTTGAACTCAC  450

seq1  AGAGATCCTCCTGTCTAGGCTTTCTGCATATTTGAAGGCATGCACCACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCCTCCTGTCTAGGCTTTCTGCATATTTGAAGGCATGCACCACTG  500

seq1  CTCCAGGTATAAAAAATGCTGTATAATATCATTATCTTTTATGATCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGTATAAAAAATGCTGTATAATATCATTATCTTTTATGATCAGAT  550

seq1  AAAATCATATTCAATGCAAGATTGAGGTTTAACAAGTATCTCATATTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATATTCAATGCAAGATTGAGGTTTAACAAGTATCTCATATTAAA  600

seq1  TTAATAAATAAAAATGTAACTGTTTTCTTCTCCACAGAAGATCTATTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAATAAAAATGTAACTGTTTTCTTCTCCACAGAAGATCTATTCTT  650

seq1  ACAGCAGAAGCACCCCTTCTGGAGAGTGAAGGGAAGGATTCAAGCATTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGAAGCACCCCTTCTGGAGAGTGAAGGGAAGGATTCAAGCATTCC  700

seq1  TTCTGTATACTGTTGCAATAATTTATTCTTCCTGTTGTAGTTTCCTAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATACTGTTGCAATAATTTATTCTTCCTGTTGTAGTTTCCTAAGA  750

seq1  TGATTAAACTTAGATTGCCTTTCTTTTCTAATACACATTTAGTACTATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAACTTAGATTGCCTTTCTTTTCTAATACACATTTAGTACTATAA  800

seq1  ATTTCCCTATAAGAGCTCATCCTGGTGGTACAGGTCTGGACTCCTAGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCTATAAGAGCTCATCCTGGTGGTACAGGTCTGGACTCCTAGCTA  850

seq1  TATGGGAGGCTGAAGCAAAAGGATCATAAGGCCAGAATAGGCAAGGTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAGGCTGAAGCAAAAGGATCATAAGGCCAGAATAGGCAAGGTATC  900

seq1  GAGACTGTCTCAAAGATTTGGAATTTAAAAATGAACAAATAAGTAAATAA  950
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  GAGACTGTCTCAAAGATTTGG-ATTTAAAAATGAACAAATAAGTAAAT-A  948

seq1  AAGTGGGGGGGGGCGCATGTAGATATAGCTCAATAGTGGAGTTCTTGCCT  1000
      |||| |||||||||||||||||| ||||||| ||||||| ||||||||||
seq2  AAGT-GGGGGGGGCGCATGTAGA-ATAGCTC-ATAGTGG-GTTCTTGCCT  994

seq1  AACTTGTGAGAAGCCCTTAGTTCACTGCCTAGCACTTAGGATAAATTCCC  1050
       ||||||||| || |||||| |||||| ||||||||||||||||||  ||
seq2  -ACTTGTGAG-AGGCCTTAG-TCACTG-CTAGCACTTAGGATAAAT--CC  1038

seq1  CTCCCCCATACCACTGACTTCACTGTATCATACACCTTTTTTTCACTCAG  1100
      || ||||||| ||||||| ||||||||||| ||||| |||||||||||||
seq2  CT-CCCCATA-CACTGAC-TCACTGTATCAAACACC-TTTTTTCACTCAG  1084

seq1  CTTAAAATATTTCTTTTAAAATGTATTCCTTTACTCATATGTTACGCAGA  1150
      ||| ||||||||||||   |||| ||  | ||||||  | |||||| || 
seq2  CTT-AAATATTTCTTT---AATG-AT--CCTTACTC--AAGTTACG-AG-  1123

seq1  AATGTGCTGTTTAATCTCTCCATACATCTTGGGATTTTTCAGTTATGTTT  1200
      ||| |||||||                                       
seq2  AATTTGCTGTT---------------------------------------  1134

seq1  CAGTTACAGACATCTAGCTCAAGCTAAAAACAGTATAAACCCTACTCCTT  1250
                                                        
seq2  --------------------------------------------------  1134

seq1  TACATTCATGAAGGGGTTATATGGTCCCAAATACAGTCTTCCTTGGTGAA  1300
                                                        
seq2  --------------------------------------------------  1134

seq1  TGCTCTGTCACCTTGAGAATTTGCTGTT  1328
                                  
seq2  ----------------------------  1134