BAC Information

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BAC

Clone NameB6Ng01-154G15
Chromosome9 (Build37)
Map Location 67,374,291 - 67,562,325
singlet/doubletdoublet
Overlap geneTln2, LOC100040253, EG640799
Upstream geneUsp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1, LOC100041390
Downstream geneLOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451, Rora
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154G15.bB6Ng01-154G15.g
ACCDH949464DH949465
length929844
definitionDH949464|Mus musculus domesticus DNA, BAC clone: B6Ng01-154G15, 5' end.DH949465|Mus musculus domesticus DNA, BAC clone: B6Ng01-154G15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,561,404 - 67,562,325)(67,374,291 - 67,374,905)
sequence
gaattcacaaatacaaatcaggaattcatcttagcaagctttaaggttcg
gccaggttctttgaaaagacaaccatagttttgttggagtgttcctagaa
gccagcgctttgctgctgggaggtttggagatctgtgtcccagccccctc
cccttcccattgtgatgctatctcattcttcaaagccacctctctagtgt
cttagagcctttgagttatgttaccaaaactggctctcaccccttcttta
gggagggggcagataattaaggggaaacatctcctgctccccaacctctc
cctcagtctgcccaagggagagtttggtgatcagaagtcaggcctgaagt
atataagagcctgagattggtgctcttgggacaaatgaaaatgacttcac
ttctcaaatccctaactatgggtgcaatctttcgtgtcctggtcctttct
gctttggtatctgccactctacaaggagaggaacttgcaggttaacatgg
ggcttggactagtggacagcttgtgattttttttttttttaatgaaataa
ggaagcttgcaggattgtgtctggttccttagacctgacagctcaccata
ctgagctactttcaagtcttcactgcagtgcttcttctgttcgattcttt
ttggtacacaaagactctcagccatgctttgggggcggggtggggcaggg
cggggcaggagaggagtctgccctaaaaagctgacatttcatgtgtgaag
gggtcagttacccatcatccacagacactctagtgttgtctctccacact
ggtgtgcatgtgacaagaccccacccattattggtagtgtgacttgcttg
ggtttgggttacaaacattcaggaaagagttattgagttcatgtttgaca
tttccggctttttctgtggaccttcggtg
gaattcacagtaaccaaaacatgattcaaaatggaacatacagtatgggg
tatctctggcagcacttacctggttacatcgacgcttcatgacaacattg
gttctgaacatatcatacccactttgcactgggctgccatcaacaccagc
cagcatcagtgtgcactactgggagctccttggctcagattagagactac
tgcctgtggtaaatatcagtatgctattgtacacgtgaagttcctgggcc
cacagaaacctacagagcaaataaaggcctaatacagtcatagtgtcatt
ctttggtgcatgtcaaattagtctactctggatgggctcctgataaaata
tttgggttttaaaattgctgtttgagtggctgacttgagttccataaaat
gtgttgaatggatttcagttttgaattagggtaaaatttccagcaatttc
tgaaaatactttaaatatacttctgccattttgtacctggtatttatgga
aatgagcatcctcggtgtgggtgattataaaatcaaattagcaaactctg
aaaaagtagtgaagatgttctagtcctgatatataaaatattcaacaatc
catctaattctttatgcaaaaacaaaataaacacagccatctcattgtgc
aaagctgcttccatctgactaaacaataaaaacatacaaatgaaaagtaa
cttaaaaacaaggtatttgatagtgtatctttttatacatctatttcttg
agtgaaaagagttgtgagtgggaaaatttaagacctgctgtaaagtattc
aaatggaatcttctgaaaattccctcatccagtatgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_67561404_67562325
seq2: B6Ng01-154G15.b_45_973 (reverse)

seq1  CACAGAAGGTCCACAGAAAAAG-CAGAAATGTCAAACATGAACTCAATAA  49
      ||| |||||||||||||||||| | |||||||||||||||||||||||||
seq2  CACCGAAGGTCCACAGAAAAAGCCGGAAATGTCAAACATGAACTCAATAA  50

seq1  CTCTTTCCTGGATGTTTGTAA-CCAAACCCAAGCAAGTCACACTACCAAT  98
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  CTCTTTCCTGAATGTTTGTAACCCAAACCCAAGCAAGTCACACTACCAAT  100

seq1  AAT-GGTGGGGTCTTGTCACATGCACACCAGTGTGGAGAGACAACACTTG  147
      ||| |||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATGGGTGGGGTCTTGTCACATGCACACCAGTGTGGAGAGACAACACTAG  150

seq1  AGTGTCTGTGGATGATGGGTAACTGA-CCCTTGCCACATG-AATGTCAGC  195
      |||||||||||||||||||||||||| |||||  |||||| |||||||||
seq2  AGTGTCTGTGGATGATGGGTAACTGACCCCTTCACACATGAAATGTCAGC  200

seq1  -TTTTAGGGCAGACTCCTCTCCTGCCCCGCCCTGCCCCACCCCGCCCCCA  244
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGGGCAGACTCCTCTCCTGCCCCGCCCTGCCCCACCCCGCCCCCA  250

seq1  AAGCATGGCTGAGAGTCTTTGTGTACCAAAAAGAATCGAACAGAAGAAGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGGCTGAGAGTCTTTGTGTACCAAAAAGAATCGAACAGAAGAAGC  300

seq1  ACTGCAGTGAAGACTTGAAAGTAGCTCAGTATGGTGAGCTGTCAGGTCTA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGTGAAGACTTGAAAGTAGCTCAGTATGGTGAGCTGTCAGGTCTA  350

seq1  AGGAACCAGACACAATCCTGCAAGCTTCCTTATTTCATTAAAAAAAAAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCAGACACAATCCTGCAAGCTTCCTTATTTCATTAAAAAAAAAAA  400

seq1  AAATCACAAGCTGTCCACTAGTCCAAGCCCCATGTTAACCTGCAAGTTCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACAAGCTGTCCACTAGTCCAAGCCCCATGTTAACCTGCAAGTTCC  450

seq1  TCTCCTTGTAGAGTGGCAGATACCAAAGCAGAAAGGACCAGGACACGAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGTAGAGTGGCAGATACCAAAGCAGAAAGGACCAGGACACGAAA  500

seq1  GATTGCACCCATAGTTAGGGATTTGAGAAGTGAAGTCATTTTCATTTGTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCACCCATAGTTAGGGATTTGAGAAGTGAAGTCATTTTCATTTGTC  550

seq1  CCAAGAGCACCAATCTCAGGCTCTTATATACTTCAGGCCTGACTTCTGAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGCACCAATCTCAGGCTCTTATATACTTCAGGCCTGACTTCTGAT  600

seq1  CACCAAACTCTCCCTTGGGCAGACTGAGGGAGAGGTTGGGGAGCAGGAGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAACTCTCCCTTGGGCAGACTGAGGGAGAGGTTGGGGAGCAGGAGA  650

seq1  TGTTTCCCCTTAATTATCTGCCCCCTCCCTAAAGAAGGGGTGAGAGCCAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCCCTTAATTATCTGCCCCCTCCCTAAAGAAGGGGTGAGAGCCAG  700

seq1  TTTTGGTAACATAACTCAAAGGCTCTAAGACACTAGAGAGGTGGCTTTGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTAACATAACTCAAAGGCTCTAAGACACTAGAGAGGTGGCTTTGA  750

seq1  AGAATGAGATAGCATCACAATGGGAAGGGGAGGGGGCTGGGACACAGATC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAGATAGCATCACAATGGGAAGGGGAGGGGGCTGGGACACAGATC  800

seq1  TCCAAACCTCCCAGCAGCAAAGCGCTGGCTTCTAGGAACACTCCAACAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACCTCCCAGCAGCAAAGCGCTGGCTTCTAGGAACACTCCAACAAA  850

seq1  ACTATGGTTGTCTTTTCAAAGAACCTGGCCGAACCTTAAAGCTTGCT-CG  893
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  ACTATGGTTGTCTTTTCAAAGAACCTGGCCGAACCTTAAAGCTTGCTAAG  900

seq1  ATGAATTCCTGATTTGTATTTGTGAATTC  922
      |||||||||||||||||||||||||||||
seq2  ATGAATTCCTGATTTGTATTTGTGAATTC  929

seq1: chr9_67374291_67374905
seq2: B6Ng01-154G15.g_294_907

seq1  ACACGTGAAGTTCCTGGGCCCACAGAAACCTACAGAGCAAATAAAGGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTGAAGTTCCTGGGCCCACAGAAACCTACAGAGCAAATAAAGGCCT  50

seq1  AATACAGTCATAGTGTCATTCTTTGGTGCATGTCAAATTAGTCTACTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGTCATAGTGTCATTCTTTGGTGCATGTCAAATTAGTCTACTCTG  100

seq1  GATGGGCTCCTGATAAAATATTTGGGTTTTAAAATTGCTGTTTGAGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGCTCCTGATAAAATATTTGGGTTTTAAAATTGCTGTTTGAGTGGC  150

seq1  TGACTTGAGTTCCATAAAATGTGTTGAATGGATTTCAGTTTTGAATTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGAGTTCCATAAAATGTGTTGAATGGATTTCAGTTTTGAATTAGG  200

seq1  GTAAAATTTCCAGCAATTTCTGAAAATACTTTAAATATACTTCTGCCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTTCCAGCAATTTCTGAAAATACTTTAAATATACTTCTGCCATT  250

seq1  TTGTACCTGGTATTTATGGAAATGAGCATCCTCGGTGTGGGTGATTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCTGGTATTTATGGAAATGAGCATCCTCGGTGTGGGTGATTATAA  300

seq1  AATCAAATTAGCAAACTCTGAAAAAGTAGTGAAGATGTTCTAGTCCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATTAGCAAACTCTGAAAAAGTAGTGAAGATGTTCTAGTCCTGAT  350

seq1  ATATAAAATATTCAACAATCCATCTAATTCTTTATGCAAAAACAAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAATATTCAACAATCCATCTAATTCTTTATGCAAAAACAAAATAA  400

seq1  ACACAGCCATCTCATTGTGCAAAGCTGCTTCCATCTGACTAAACAATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCCATCTCATTGTGCAAAGCTGCTTCCATCTGACTAAACAATAAA  450

seq1  AACATACAAATGAAAAGTAACTTAAAAACAAGGTATTTGATAGTGTATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACAAATGAAAAGTAACTTAAAAACAAGGTATTTGATAGTGTATCT  500

seq1  TTTTATACATCTATTTCTTGAGTGAAAAGAGTTGTGAGTGGGAAAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATACATCTATTTCTTGAGTGAAAAGAGTTGTGAGTGGGAAAATTTA  550

seq1  AGACCTGCTGTAAAGTATTCAAATGGAATCTTCTGAAAAATTCCCTCATC  600
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGACCTGCTGTAAAGTATTCAAATGGAATCTTCTG-AAAATTCCCTCATC  599

seq1  CAGTATGTGTGTGTG  615
      |||||||||||||||
seq2  CAGTATGTGTGTGTG  614