BAC Information

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BAC

Clone NameB6Ng01-154L10
Chromosome9 (Build37)
Map Location 101,799,456 - 101,896,711
singlet/doubletdoublet
Overlap geneEphb1, 9630041A04Rik
Upstream geneStag1, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099
Downstream geneKy, LOC664843, Cep63, Anapc13, Amotl2, EG434510, Ryk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154L10.bB6Ng01-154L10.g
ACCDH949685DH949686
length1,1941,092
definitionDH949685|Mus musculus domesticus DNA, BAC clone: B6Ng01-154L10, 5' end.DH949686|Mus musculus domesticus DNA, BAC clone: B6Ng01-154L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,799,456 - 101,800,300)(101,895,605 - 101,896,711)
sequence
gaattcagtaggatgcctcaggctatcccctttttgggtctctggttgca
ggtggacaaggagttggcgaatgacaaacagaagcgatacacgagattgt
gtagaatctgaatgtactttgtcaaattgagcatcaaactttttatacag
aagaaaatagggaagttgggtgacacaccggcaaggtacaaagaggttac
tggattcttatacaaaacagggaatgcaaacatggaaggactggcatgaa
ccaaatgggataaaattcaatgttaacaactgggatcaaaaacagctaca
actaaggtccgcttaatcttagaagccagggtcaagggcttcgtgccctt
gccatagttcctattctaggctattatatagtccaccttccccctaggct
attgtgaatacttgtgtaaggatgtaactctgctatctatagttctaagt
atctactctggttccttcttaggtcacaaacttcctttttcctagataat
ggtaaattcctgtgtagggcagtgacttagctatccatgcccaaggtcgg
atcaaggactgcctagaatctaacttagcagctatatgtcaaaaattcaa
tccttaggagcacttgtaataaagcaatataaagggaaagcacacagatc
tgtttaccaactaaagcaaggacattggagcattctttatacaggatgcc
acgattccaggagactaagtttctgtgaactttttgccccttgccagcgc
ccaggttttcagggcctgttgtgcctgtcactactggagtggatgtagca
gtaggagagaaatcttgggaaatattgatggactacctgtatatccctat
gaaaaaccaacaaatactaactaagcatgtccaagacaatattttatgtc
atatataatagctatcatcattatttataacttatgttatatatgaataa
tagtgagaatcacaggctaatataaagaccaaagctagaggtaatttttt
tcttttgtttaggacattattacttctcaagaagacaaaagaaactaaac
attttaaagatagtttatcagatcaaacaccttcactttgagttttaaga
aaattaaaagatatagcaccgccgaatgaaatgtcttgccagaataacga
gggaagtatatatcccatacataagaatctttcctttgctctta
gaattctctttctcaaggtgtgccaaccctcaggtgggacacagaggatc
cccaggcatcctgggtaggtaggctgccaatgttcttttggctaacttca
gactgacacttggctgtccttctttggaagggtggctctgccaggcaact
tgatctacaaagttgtgtttctaaaatgttcatgactccccatgtgggag
tcagggaggggggactccatcatttatatagccacaggggaaggcgtctc
tgcttcctaggctctgtaaaataaaataaaaaaaagtacaccaagtcttc
agccatggagtcattgctactactagtgagcatggctgaagttattgttc
tccagcttcatttattatggctaggtggatgtagatctcttagagtaggc
tctggttatttcttaggctgttttatgtgtaagagccatttctaaatgcc
cttctcccctgtgcctagctattctcttttaatccaacccctgacattta
cccctgcacccgcaaccccaaccctaaccccaatacacacacacacacac
acactcacacctgggttctctaagcccacactctcatgcactgagtttca
tctgtgcatttatgaagccattgctactggaagatcatgattaaagggtc
atgcagctagaggaaagcccagaacaccaagggcagtaaagctctggtga
aggaagagtctggctggcagggaggggcagacaggtggagacgggaggaa
tggctatggaaggtttcctctgtgtctatactggaaagcttaatctggta
gctcgccttgactcaaggagacagctgctagtccaggaaaggaaggacaa
gtgtctttcttcagtaataaagcttgagattgaagatgtggcttgttctc
cctctgagtctgtctgtagaccccattctctttgcatgttgcagaggctt
agaggctcagtgtgcctggtctgggtgcagatctatgttaatcccagatg
cattctccacattccagatggtggttatgagtccactctagtccattcta
gaggtcagaggctcaatggctcagctgtgaatgcagcacata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_101799456_101800300
seq2: B6Ng01-154L10.b_406_1243

seq1  GTTCCTATTCTAGGCTATTATATAGTCCACCTTCCCCCTAGGCTATTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTATTCTAGGCTATTATATAGTCCACCTTCCCCCTAGGCTATTGTG  50

seq1  AATACTTGTGTAAGGATGTAACTCTGCTATCTATAGTTCTAAGTATCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTGTGTAAGGATGTAACTCTGCTATCTATAGTTCTAAGTATCTAC  100

seq1  TCTGGTTCCTTCTTAGGTCACAAACTTCCTTTTTCCTAGATAATGGTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTCCTTCTTAGGTCACAAACTTCCTTTTTCCTAGATAATGGTAAA  150

seq1  TTCCTGTGTAGGGCAGTGACTTAGCTATCCATGCCCAAGGTCGGATCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGTAGGGCAGTGACTTAGCTATCCATGCCCAAGGTCGGATCAAG  200

seq1  GACTGCCTAGAATCTAACTTAGCAGCTATATGTCAAAAATTCAATCCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCTAGAATCTAACTTAGCAGCTATATGTCAAAAATTCAATCCTTA  250

seq1  GGAGCACTTGTAATAAAGCAATATAAAGGGAAAGCACACAGATCTGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACTTGTAATAAAGCAATATAAAGGGAAAGCACACAGATCTGTTTA  300

seq1  CCAACTAAAGCAAGGACATTGGAGCATTCTTTATACAGGATGCCACGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTAAAGCAAGGACATTGGAGCATTCTTTATACAGGATGCCACGATT  350

seq1  CCAGGAGACTAAGTTTCTGTGAACTTTTTGCCCCTTGCCAGCGCCCAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGACTAAGTTTCTGTGAACTTTTTGCCCCTTGCCAGCGCCCAGGT  400

seq1  TTTCAGGGCCTGTTGTGCCTGTCACTACTGGAGTGGATGTAGCAGTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGGCCTGTTGTGCCTGTCACTACTGGAGTGGATGTAGCAGTAGGA  450

seq1  GAGAAATCTTGGGAAATATTGATGGACTACCTGTATATCCCTATGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATCTTGGGAAATATTGATGGACTACCTGTATATCCCTATGAAAAA  500

seq1  CCAACAAATACTAACTAAGCATGTCCAAGACAATATTTTATGTCATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAATACTAACTAAGCATGTCCAAGACAATATTTTATGTCATATAT  550

seq1  AATAGCTATCATCATTATTTATTAACTTATGTTATATATGAATAATAGTG  600
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AATAGCTATCATCATTATTTA-TAACTTATGTTATATATGAATAATAGTG  599

seq1  AGAATCACAGGCTAAATATAAAGACCAAAGCTAGAGGTAATTTTAT--CT  648
      ||||||||||||| |||||||||||||||||||||||||||||| |   |
seq2  AGAATCACAGGCT-AATATAAAGACCAAAGCTAGAGGTAATTTTTTTCTT  648

seq1  TTGTTTAGGACATTA-TACTTCTTCAAGAAGACAAAAGAAACTAAACATT  697
      ||||||||||||||| |||||| |||||||||||||||||||||||||||
seq2  TTGTTTAGGACATTATTACTTC-TCAAGAAGACAAAAGAAACTAAACATT  697

seq1  TTAAAGATAAGTTTAATCAGATCAAACACCTTTCACCTTTGAGTCTTAAG  747
      |||||||| ||||| ||||||||||||||| |||| |||||||| |||||
seq2  TTAAAGAT-AGTTT-ATCAGATCAAACACC-TTCA-CTTTGAGTTTTAAG  743

seq1  AAAATAAAAAGATAAGCCACCGCAGATGAAAATGTCTGCCAAGAATAACA  797
      ||||| ||||||||   |||||| ||   ||||||||  | |||||||| 
seq2  AAAATTAAAAGATATAGCACCGCCGAATGAAATGTCTTGCCAGAATAAC-  792

seq1  GAGGGAAGGTAATTATTCCCAATACATAAGAATCTTT-CTTTGCTCTTA  845
      ||||||| |||  |||  || |||||||||||||||| |||||||||||
seq2  GAGGGAA-GTA--TATATCCCATACATAAGAATCTTTCCTTTGCTCTTA  838

seq1: chr9_101895605_101896711
seq2: B6Ng01-154L10.g_69_1160 (reverse)

seq1  TATGTGCCTGCATTCACAGCTGAGCACATTTGAGCCTCCTGACTCTTAGA  50
      |||||| |||||||||||||||||| || |||||||| |||||   ||||
seq2  TATGTG-CTGCATTCACAGCTGAGC-CA-TTGAGCCT-CTGACCTCTAGA  46

seq1  ATGGGACTAGAGGTGGGAACTCATAAACCACCAATCTGGAATTGTGGAAG  100
      || |||||||| ||||  |||||| ||||||| |||||||| ||||| ||
seq2  AT-GGACTAGA-GTGG--ACTCAT-AACCACC-ATCTGGAA-TGTGG-AG  88

seq1  AATTGCATCTGGGATTAGACATAGATCTGCACCCAAGACCAGGCACACTG  150
      || |||||||||||||| |||||||||||||||| |||||||||||||||
seq2  AA-TGCATCTGGGATTA-ACATAGATCTGCACCC-AGACCAGGCACACTG  135

seq1  AGCCTCTAAGCCTCTGCAACATGCAAAGAGAATGGGGTCTACAGACAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTAAGCCTCTGCAACATGCAAAGAGAATGGGGTCTACAGACAGAC  185

seq1  TCAGAGGGAGAACAAGCCACATCTTCAATCTTCAAGCTTTATTACTGAAG  250
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCAGAGGGAGAACAAGCCACATCTTCAATC-TCAAGCTTTATTACTGAAG  234

seq1  AAAGACACTTGTCCTTCC-TTCCTGGACTAGCAGCTGTCTCCTTGAGTCA  299
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAAGACACTTGTCCTTCCTTTCCTGGACTAGCAGCTGTCTCCTTGAGTCA  284

seq1  AGGCGAGCTACCAGATTAAGCTTTCCAGTATAGACACAGAGGAAACCTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGAGCTACCAGATTAAGCTTTCCAGTATAGACACAGAGGAAACCTTC  334

seq1  CATAGCCATTCCTCCCGTCTCCACCTGTCTGCCCCTCCCTGCCAGCCAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCATTCCTCCCGTCTCCACCTGTCTGCCCCTCCCTGCCAGCCAGA  384

seq1  CTCTTCCTTCACCAGAGCTTTACTGCCCTTGGTGTTCTGGGCTTTCCTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTTCACCAGAGCTTTACTGCCCTTGGTGTTCTGGGCTTTCCTCT  434

seq1  AGCTGCATGACCCTTTAATCATGATCTTCCAGTAGCAATGGCTTCATAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCATGACCCTTTAATCATGATCTTCCAGTAGCAATGGCTTCATAAA  484

seq1  TGCACAGATGAAACTCAGTGCATGAGAGTGTGGGCTTAGAGAACCCAGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGATGAAACTCAGTGCATGAGAGTGTGGGCTTAGAGAACCCAGGT  534

seq1  GTGAGTGTGTGTGTGTGTGTGTGTATTGGGGTTAGGGTTGGGGTTGCGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGTGTGTGTGTGTGTGTGTATTGGGGTTAGGGTTGGGGTTGCGGG  584

seq1  TGCAGGGGTAAATGTCAGGGGTTGGATTAAAAGAGAATAGCTAGGCACAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGGTAAATGTCAGGGGTTGGATTAAAAGAGAATAGCTAGGCACAG  634

seq1  GGGAGAAGGGCATTTAGAAATGGCTCTTACACATAAAACAGCCTAAGAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAGGGCATTTAGAAATGGCTCTTACACATAAAACAGCCTAAGAAA  684

seq1  TAACCAGAGCCTACTCTAAGAGATCTACATCCACCTAGCCATAATAAATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGAGCCTACTCTAAGAGATCTACATCCACCTAGCCATAATAAATG  734

seq1  AAGCTGGAGAACAATAACTTCAGCCATGCTCACTAGTAGTAGCAATGACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGAGAACAATAACTTCAGCCATGCTCACTAGTAGTAGCAATGACT  784

seq1  CCATGGCTGAAGACTTGGTGTACTTTTTTTTATTTTATTTTACAGAGCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCTGAAGACTTGGTGTACTTTTTTTTATTTTATTTTACAGAGCCT  834

seq1  AGGAAGCAGAGACGCCTTCCCCTGTGGCTATATAAATGATGGAGTCCCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCAGAGACGCCTTCCCCTGTGGCTATATAAATGATGGAGTCCCCC  884

seq1  CTCCCTGACTCCCACATGGGGAGTCATGAACATTTTAGAAACACAACTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGACTCCCACATGGGGAGTCATGAACATTTTAGAAACACAACTTT  934

seq1  GTAGATCAAGTTGCCTGGCAGAGCCACCCTTCCAAAGAAGGACAGCCAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATCAAGTTGCCTGGCAGAGCCACCCTTCCAAAGAAGGACAGCCAAG  984

seq1  TGTCAGTCTGAAGTTAGCCAAAAGAACATTGGCAGCCTACCTACCCAGGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTCTGAAGTTAGCCAAAAGAACATTGGCAGCCTACCTACCCAGGA  1034

seq1  TGCCTGGGGATCCTCTGTGTCCCACCTGAGGGTTGGCACACCTTGAGAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGGGATCCTCTGTGTCCCACCTGAGGGTTGGCACACCTTGAGAAA  1084

seq1  GAGAATTC  1107
      ||||||||
seq2  GAGAATTC  1092