BAC Information

Click to search

BAC

Clone NameB6Ng01-154M06
Chromosome9 (Build37)
Map Location 72,711,950 - 72,835,940
singlet/doubletdoublet
Overlap genePrtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896
Upstream geneTcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396
Downstream genePigb, Rab27a, 2410004A20Rik, BC003885, EG436081, Unc13c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154M06.bB6Ng01-154M06.g
ACCDH949723DH949724
length8811,129
definitionDH949723|Mus musculus domesticus DNA, BAC clone: B6Ng01-154M06, 5' end.DH949724|Mus musculus domesticus DNA, BAC clone: B6Ng01-154M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,835,062 - 72,835,940)(72,711,950 - 72,713,111)
sequence
gaattcagtataactgaggattgtgctttggtttgtttgtttctttcttt
cttttttttttttttttttttttggggggggtttcgagactaggtttctc
tgtatagccctggctgtcctggaactcaaaaatccacctgcctctacctc
ccaaggaccgggattaataaaggcatgagccatcactgcccagctgtgct
ttggtttcttttgttgttgatcagtttgcatgtgtcttgttgggtttttt
ttttttcctacttcctgatttgcttttttgaggtaaggcctgcctcctta
gtgaagggattagtgtgcaccacccacccggctaccctgtttggactgtg
tactgctttgtccttttttggaaactggatcttgttgtgtagctcaaatt
ggccttaaatttccaattgttctgcctatgcctcctaagctatgttagac
ctaggccattacactaacttctttatttacttttagtttttaagcccaac
acccagccccacagccccccacccccatctctgtgcatctgtgttcagag
gacagtgagcaacttatggggggtcagttctctccatcctgtgggttcca
gaaatgaacctctgatggcagacttgttcagcgagtccccttacccatgg
agacaccttgccagcccatttactttagaaagtcatacttaaagaatcta
aagataatggaggcaagagcatgtagaattcaaggctacatagccaactg
gtagctggcctgggctatatgagatgctgtctttttaaggtttcagagtt
gaagaaacagctctatggtggagaacaaatactaggaggacagttcccaa
cttcttctggtctcccacaggcactgcatac
gaattcacgtgcttctacttgctgatcgagtgtcgttttatataacaaac
tgctttctcaaaatttcattttcacactaaccccctctgatgcctttaac
ccttccttccctggctttcatttctggtaattaagttttcaatttaagaa
gtgtgtcactgggacatggtctccctagaaataggcatagttctttgttc
taaaagacagaaaagcaaacggatttatacctttagtgtttttttttaaa
tgggcatgacaaaagatatgagagtctcagttcccttacaacaggaaaga
tggagtcaaatgctacttaattggctgcttgtacaatgttcccacaaaga
cctggtcagctgaatttaattgggtttattagtgggaaatatttaaaatg
attttactcaagtacctcaaaactcagttccttaagatgtggagtacttt
gtctgtgggttaaaaaataaattcttatgtctttaaagagtaaaatataa
aatagtatgtgtgtgtgtgtgcatgtaatgtaaaaaatatgtaattacaa
tagcatataatatataatggcataaaatataatagttatgtgcaaggcct
ggatccagtcccagcatttaaaaagagcgtgtgacttgactttcgacggc
actgggaagctttagtgcctctgcttcgctcgggtttgactttagagtgc
agtttgctttcctgggatctggtttgtgttgtggggcagaaattgcttca
ggcctgtggtggagtcatttgtgggaccccctgctcagtgctgtgctgag
ggtcttcaggatttacacatagcttttcctgtcttcctgagtgttcatct
cagttacaagataaatctttgtaatatttatcacacaatacacaaaagaa
attaataaggtatcatgtcccctgatagaaaagaaatcttgttcttatct
ttgttgtttgttgctttgttgttgtttgtttgtttctggataggtttctc
ttgtagccttgctgtctggactcttctctgtagacagctgcctcgactca
gcgagatcttattgctctctgccctgagtgatggataagaattgccaaac
caccagctattatgtctttttttataata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_72835062_72835940
seq2: B6Ng01-154M06.b_44_924 (reverse)

seq1  GTATGCAGTGCCTGT-GGAGACCAGAAG-AGTTGGGAACTGTCCTCCTAG  48
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  GTATGCAGTGCCTGTGGGAGACCAGAAGAAGTTGGGAACTGTCCTCCTAG  50

seq1  TATTTGTTCTCCACCATTGAGCTGTTTCTTCAGCTCTGAAATCTTTAAAA  98
      ||||||||||||||||| |||||||||||||| |||||||| ||| ||||
seq2  TATTTGTTCTCCACCATAGAGCTGTTTCTTCAACTCTGAAACCTTAAAAA  100

seq1  GACAGCATCTCATATAGCCCAGGCCAGCTACCAGTTGGCTATGTAGCCTT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCATCTCATATAGCCCAGGCCAGCTACCAGTTGGCTATGTAGCCTT  150

seq1  GAATTCTACATGCTCTTGCCTCCATTATCTTTAGATTCTTTAAGTATGAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATGCTCTTGCCTCCATTATCTTTAGATTCTTTAAGTATGAC  200

seq1  TTTCTAAAGTAAATGGGCTGGCAAGGTGTCTCCATGGGTAAGGGGACTCG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAAGTAAATGGGCTGGCAAGGTGTCTCCATGGGTAAGGGGACTCG  250

seq1  CTGAACAAGTCTGCCATCAGAGGTTCATTTCTGGAACCCACAGGATGGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAAGTCTGCCATCAGAGGTTCATTTCTGGAACCCACAGGATGGAG  300

seq1  AGAACTGACCCCCCATAAGTTGCTCACTGTCCTCTGAACACAGATGCACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGACCCCCCATAAGTTGCTCACTGTCCTCTGAACACAGATGCACA  350

seq1  GAGATGGGGGTGGGGGGCTGTGGGGCTGGGTGTTGGGCTTAAAAACTAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGGGGTGGGGGGCTGTGGGGCTGGGTGTTGGGCTTAAAAACTAAA  400

seq1  AGTAAATAAAGAAGTTAGTGTAATGGCCTAGGTCTAACATAGCTTAGGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATAAAGAAGTTAGTGTAATGGCCTAGGTCTAACATAGCTTAGGAG  450

seq1  GCATAGGCAGAACAATTGGAAATTTAAGGCCAATCTGAGCTACACAACAA  498
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCATAGGCAGAACAATTGGAAATTTAAGGCCAATTTGAGCTACACAACAA  500

seq1  GATCCAGTTTCCAAAAAAGGACAAAGCAGTACACAGTCCAAACAGGGTAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGTTTCCAAAAAAGGACAAAGCAGTACACAGTCCAAACAGGGTAG  550

seq1  CCGGGTGGGTGGTGCACACTAATCCCTTCACTAAGGAGGCAGGCCTTACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGTGGGTGGTGCACACTAATCCCTTCACTAAGGAGGCAGGCCTTACC  600

seq1  TCAAAAAAGCAAATCAGGAAGTAGGAAAAAAAAAAAACCCAACAAGACAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAGCAAATCAGGAAGTAGGAAAAAAAAAAAACCCAACAAGACAC  650

seq1  ATGCAAACTGATCAACAACAAAAGAAACCAAAGCACAGCTGGGCAGTGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAACTGATCAACAACAAAAGAAACCAAAGCACAGCTGGGCAGTGAT  700

seq1  GGCTCATGCCTTTATTAATCCCGGTCCTTGGGAGGTAGAGGCAGGTGGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATGCCTTTATTAATCCCGGTCCTTGGGAGGTAGAGGCAGGTGGAT  750

seq1  TTCTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCTAGTCTCGAAA  798
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCTAGTCTCGAAA  800

seq1  CCCCCCCCAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAAACAAACAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAAACAAACAAA  850

seq1  CCAAAGCACAATCCTCAGTTATACTGAATTC  879
      |||||||||||||||||||||||||||||||
seq2  CCAAAGCACAATCCTCAGTTATACTGAATTC  881

seq1: chr9_72711950_72713111
seq2: B6Ng01-154M06.g_68_1196

seq1  GAATTCACGTGCTTCTACTTGCTGATCGAGTGTCGTTTTATATAACAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGTGCTTCTACTTGCTGATCGAGTGTCGTTTTATATAACAAAC  50

seq1  TGCTTTCTCAAAATTTCATTTTCACACTAACCCCCTCTGATGCCTTTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTCAAAATTTCATTTTCACACTAACCCCCTCTGATGCCTTTAAC  100

seq1  CCTTCCTTCCCTGGCTTTCATTTCTGGTAATTAAGTTTTCAATTTAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCCTGGCTTTCATTTCTGGTAATTAAGTTTTCAATTTAAGAA  150

seq1  GTGTGTCACTGGGACATGGTCTCCCTAGAAATAGGCATAGTTCTTTGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCACTGGGACATGGTCTCCCTAGAAATAGGCATAGTTCTTTGTTC  200

seq1  TAAAAGACAGAAAAGCAAACGGATTTATACCTTTAGTGTTTTTTTTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGACAGAAAAGCAAACGGATTTATACCTTTAGTGTTTTTTTTTAAA  250

seq1  TGGGCATGACAAAAGATATGAGAGTCTCAGTTCCCTTACAACAGGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATGACAAAAGATATGAGAGTCTCAGTTCCCTTACAACAGGAAAGA  300

seq1  TGGAGTCAAATGCTACTTAATTGGCTGCTTGTACAATGTTCCCACAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCAAATGCTACTTAATTGGCTGCTTGTACAATGTTCCCACAAAGA  350

seq1  CCTGGTCAGCTGAATTTAATTGGGTTTATTAGTGGGAAATATTTAAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCAGCTGAATTTAATTGGGTTTATTAGTGGGAAATATTTAAAATG  400

seq1  ATTTTACTCAAGTACCTCAAAACTCAGTTCCTTAAGATGTGGAGTACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTCAAGTACCTCAAAACTCAGTTCCTTAAGATGTGGAGTACTTT  450

seq1  GTCTGTGGGTTAAAAAATAAATTCTTATGTCTTTAAAGAGTAAAATATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGGGTTAAAAAATAAATTCTTATGTCTTTAAAGAGTAAAATATAA  500

seq1  AATAGTATGTGTGTGTGTGTGCATGTAATGTAAAAAATATGTAATTACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTATGTGTGTGTGTGTGCATGTAATGTAAAAAATATGTAATTACAA  550

seq1  TAGCATATAATATATAATGGCATAAAATATAATAGTTATGTGCAAGGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATATAATATATAATGGCATAAAATATAATAGTTATGTGCAAGGCCT  600

seq1  GGATCCAGTCCCAGCATTTAAAAAGAGCGTGTGACTTGACTTTCGACGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCAGTCCCAGCATTTAAAAAGAGCGTGTGACTTGACTTTCGACGGC  650

seq1  ACTGGGAAGCTTTAGTGCCTCTGCTTCGCTCGGGTTTGACTTTAGAGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAAGCTTTAGTGCCTCTGCTTCGCTCGGGTTTGACTTTAGAGTGC  700

seq1  AGTTTGCTTTCCTGGGATCTGGTTTGTGTTGTGGGGCAGAAATTGCTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCTTTCCTGGGATCTGGTTTGTGTTGTGGGGCAGAAATTGCTTCA  750

seq1  GGCCTGTGGTGGAGTCATTTGTGGGACCCCCTGCTCAGTGCTGTGCTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTGGTGGAGTCATTTGTGGGACCCCCTGCTCAGTGCTGTGCTGAG  800

seq1  GGTCTTCAGGATTTACACATAGCTTTTCCTGTCTTCCTGAGTGTTCATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCAGGATTTACACATAGCTTTTCCTGTCTTCCTGAGTGTTCATCT  850

seq1  CAGTTACAAGATAAATCTTTGTAATATTTATCACACAATACACAAAAAGA  900
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  CAGTTACAAGATAAATCTTTGTAATATTTATCACACAATACACAAAA--G  898

seq1  AAATTAATAAGGTATCATGTCCCCTGATAGAAAAGAAAATCTTGTTTCTT  950
      ||||||||||||||||||||||||||||||||||| ||||||||||   |
seq2  AAATTAATAAGGTATCATGTCCCCTGATAGAAAAG-AAATCTTGTT--CT  945

seq1  TATCTTTTGTTTGTTTGTTTGCTTTTGTTTGTTTGTTTGTTTGTTTTTCT  1000
      |||||||   ||||||| |||| ||||||   |||||||||||  |||||
seq2  TATCTTT--GTTGTTTG-TTGC-TTTGTT--GTTGTTTGTTTG--TTTCT  987

seq1  GGATAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTC-TCTCTGTA  1049
      ||||| ||||||||| ||||| ||| ||||| |||| |||| ||||||||
seq2  GGATA-GGTTTCTCT-TGTAG-CCTTGCTGT-CTGG-ACTCTTCTCTGTA  1032

seq1  GAGCAGGCTGCCCTCGAACTCAGCAGAGATCTTATTGCCTCTCTGCCTCT  1099
      || || |||| ||||| ||||||| |||||||||||| ||||||||| ||
seq2  GA-CA-GCTG-CCTCG-ACTCAGC-GAGATCTTATTG-CTCTCTGCC-CT  1075

seq1  GGAGTGATGGGATTAAAGACATGTGCAACCACCACCCAGCCTAATTATGT  1149
       ||||||| ||||  ||||  ||   |||||||| |       |||||||
seq2  -GAGTGAT-GGAT--AAGAATTGCCAAACCACCAGC------TATTATGT  1115

seq1  CTTTTTTTA-AATA  1162
      ||||||||| ||||
seq2  CTTTTTTTATAATA  1129