BAC Information

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BAC

Clone NameB6Ng01-155L16
Chromosome3 (Build37)9 (Build37)
Map Location 41,059,226 - 41,059,73788,097,315 - 88,098,362
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155L16.bB6Ng01-155L16.g
ACCDH950430DH950431
length1,0161,029
definitionDH950430|Mus musculus domesticus DNA, BAC clone: B6Ng01-155L16, 5' end.DH950431|Mus musculus domesticus DNA, BAC clone: B6Ng01-155L16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,226 - 41,059,737)(88,097,315 - 88,098,362)
sequence
gaattctttgtttagctctgtacaccatttttaaatagggtatttgattt
tctggagtccagcttcttgagttctttgtatatattagatattagtcccc
tatgggatttaggactggtaaagatcctttcccaatctcttggtggcctt
tttctcttattgacagtcttttgccttacagaagctttgcaattttatga
gttcccacttgtcgattcttgatcttacacacaagccattgctgttctgt
tcaggaatttttcccctgtgcccatatcttcgaggcttttccccactttc
tcctctataagtttcagtgtctctggttttatgtggagctccttgatcca
cttagatttgaccttagtacaaggagataggaatggatcaattcacattc
ttctaaataataactaccagttgagctagcaccatttgttgaaaatgctg
tattttttccactggatggttttagctcctttgtcaaagatcaagtgacc
ataggtgtgtaggttcatttctgggtcttcaattctattcaattgatcta
cctgtctgtcactgtaccaataccatgcagtttttatcacaattgctctg
tggtacagcttgaggtcaggcatcgtgattccaccagaggttcttttatt
gttgagaatagtttttgctatactaggttttttgttattccagatgaatt
tgcaaattgctctttctaactctgtgaagaattgggttggaattttgatg
ggaattgcattgaatctgtagattgctttgggtaagatagcgatttttat
tatactatcctgccaattcatgagcatgggagatctttccatctttagag
atcttctttgaattctttcttcagagacttggagttcttgtcatacagat
ctttcacttccttagttagagtcacaccaaggtatttttatattatttgt
gactattgtgagagtgtgtttccctaatttctttctcagctgttatcttg
tgtagagaaggcactg
gaattccagacactccagttggctcagatctgacaccaaattaagacaca
cagtgttgagaaggggccacacacacacttggatgaggtcaccattctgc
atttgacattgattgtgctctctggatttacttgctgagctaagaaattc
ggaatatgttatagagctaatggcaggccccagagctacacgaaaatatc
caaccaacatatatgagcaaacacgatcaggactccttcttgcactagag
tcctgtccccaacacagcaataatctgagaactttgagcccgtttcttaa
gccaaatcaggccccgaaaacatttcagaatctctgtctgtgggaatatg
ccctcagctgctcgtgggaataggtaataaaatggggtaagaccaataca
cacagttttatttctagaccttatagacaaaacagaaataatctaaagtt
gatggattgtctcaactgtgctatagcagtgatttatatatcttgtaatc
ttaatattgtctccaaatgtgtgaaagaagggactgcaccatttcaaatc
attcaattttgatgccaaaataagttagagttgttttggcagttccagac
agttatggatctcactctgatatgtgtctgtgcaccatgccctcctttga
aatagtctatcccatggctcaaagaggaaattcatttgaatcatttgagg
acaaatttagacatatatttagacagacaaaatattcaggcagctgcttg
gtatgcgattaaaatgccactggtgggaaccattggctctggcaacaggg
agggagacataattttccccccaggaaaccaatgctatccacagataaaa
tgaaatggtgatcttactatggctcctgtagaaggtccacctgacattca
gcacccagtgagccaccggcagtggccagagtgggctcagaggtctcagg
atgaagctagacgctacacatgtatactctgcatctaaaagcaggtagtt
cccaacactgctgctgttgatgcgcctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059226_41059737
seq2: B6Ng01-155L16.b_49_557 (reverse)

seq1  ACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGT  50
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  ACACACCTATGGTCACTTGATCTTTGACAAAGGAGCTAAAACCATCCAGT  50

seq1  GGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTA  100
      |||||||| |||||||||||||||||||||||| || |||||||| ||||
seq2  GGAAAAAATACAGCATTTTCAACAAATGGTGCTAGCTCAACTGGTAGTTA  100

seq1  TCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGT  150
      | || |||||||||| ||||||||||| ||||||||||||||||||||||
seq2  TTATTTAGAAGAATGTGAATTGATCCATTCCTATCTCCTTGTACTAAGGT  150

seq1  CAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAAC  200
      ||||||||||||||||||||| | ||||||||||||||||||||||||||
seq2  CAAATCTAAGTGGATCAAGGAGCTCCACATAAAACCAGAGACACTGAAAC  200

seq1  TTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAA  250
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  TTATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGATATGGGCACAGGGGAA  250

seq1  AAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGA  300
      ||||||||| | ||||||||||||||||||| ||||||||  ||||| ||
seq2  AAATTCCTGAACAGAACAGCAATGGCTTGTG-TGTAAGATCAAGAATCGA  299

seq1  CAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCG  350
      ||| ||||| ||||| ||| ||||||||||||| ||||||||||  || |
seq2  CAAGTGGGAACTCATAAAATTGCAAAGCTTCTGTAAGGCAAAAG--ACTG  347

seq1  TCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTAT  399
      ||||||||| ||||||| |||||| ||||||||||||||||||||||  |
seq2  TCAATAAGAGAAAAAGGCCACCAAGAGATTGGGAAAGGATCTTTACCAGT  397

seq1  CCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAGAA  449
      ||||||||  |||||||||||||||| ||||||||  |||||||||||||
seq2  CCTAAATCCCATAGGGGACTAATATCTAATATATACAAAGAACTCAAGAA  447

seq1  GGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGC  499
      | |||| ||||||||||||||| |||| ||| |||||||| |  ||||||
seq2  GCTGGACTCCAGAAAATCAAAT-ACCCTATTTAAAAATGGTGTACAGAGC  496

seq1  TAAACAAAGAATT  512
      |||||||||||||
seq2  TAAACAAAGAATT  509

seq1: chr9_88097315_88098362
seq2: B6Ng01-155L16.g_69_1097

seq1  GAATTCCAGACACTCCAGTTGGCTCAGATCTGACACCAAATTAAGACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACACTCCAGTTGGCTCAGATCTGACACCAAATTAAGACACA  50

seq1  CAGTGTTGAGAAGGGGCCACACACACACTTGGATGAGGTCACCATTCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTGAGAAGGGGCCACACACACACTTGGATGAGGTCACCATTCTGC  100

seq1  ATTTGACATTGATTGTGCTCTCTGGATTTACTTGCTGAGCTAAGAAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACATTGATTGTGCTCTCTGGATTTACTTGCTGAGCTAAGAAATTC  150

seq1  GGAATATGTTATAGAGCTAATGGCAGGCCCCAGAGCTACACGAAAATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATGTTATAGAGCTAATGGCAGGCCCCAGAGCTACACGAAAATATC  200

seq1  CAACCAACATATATGAGCAAACACGATCAGGACTCCTTCTTGCACTAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAACATATATGAGCAAACACGATCAGGACTCCTTCTTGCACTAGAG  250

seq1  TCCTGTCCCCAACACAGCAATAATCTGAGAACTTTGAGCCCGTTTCTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCCCCAACACAGCAATAATCTGAGAACTTTGAGCCCGTTTCTTAA  300

seq1  GCCAAATCAGGCCCCGAAAACATTTCAGAATCTCTGTCTGTGGGAATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATCAGGCCCCGAAAACATTTCAGAATCTCTGTCTGTGGGAATATG  350

seq1  CCCTCAGCTGCTCGTGGGAATAGGTAATAAAATGGGGTAAGACCAATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGCTGCTCGTGGGAATAGGTAATAAAATGGGGTAAGACCAATACA  400

seq1  CACAGTTTTATTTCTAGACCTTATAGACAAAACAGAAATAATCTAAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTTTATTTCTAGACCTTATAGACAAAACAGAAATAATCTAAAGTT  450

seq1  GATGGATTGTCTCAACTGTGCTATAGCAGTGATTTATATATCTTGTAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATTGTCTCAACTGTGCTATAGCAGTGATTTATATATCTTGTAATC  500

seq1  TTAATATTGTCTCCAAATGTGTGAAAGAAGGGACTGCACCATTTCAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTGTCTCCAAATGTGTGAAAGAAGGGACTGCACCATTTCAAATC  550

seq1  ATTCAATTTTGATGCCAAAATAAGTTAGAGTTGTTTTGGCAGTTCCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTTTGATGCCAAAATAAGTTAGAGTTGTTTTGGCAGTTCCAGAC  600

seq1  AGTTATGGATCTCACTCTGATATGTGTCTGTGCACCATGCCCTCCTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGGATCTCACTCTGATATGTGTCTGTGCACCATGCCCTCCTTTGA  650

seq1  AATAGTCTATCCCATGGCTCAAAGAGGAAATTCATTTGAATCATTTGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCTATCCCATGGCTCAAAGAGGAAATTCATTTGAATCATTTGAGG  700

seq1  ACAAATTTAGACATATATTTAGACAGACAAAATATTCAGGCAGCTGCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTAGACATATATTTAGACAGACAAAATATTCAGGCAGCTGCTTG  750

seq1  GTATGCGATTAAAATGCCACTGGTGGGAACCATTGGCTCTGGCAACAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCGATTAAAATGCCACTGGTGGGAACCATTGGCTCTGGCAACAGGG  800

seq1  AGGGAGACATAATTTTCCCCCCAGGAAACCAATGCTATCCACAGATAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGACATAATTTTCCCCCCAGGAAACCAATGCTATCCACAGATAAAA  850

seq1  TGAAATGGTGATCTTACTATGGCTCCTGTAGAAGGTCCACCTGACATTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGGTGATCTTACTATGGCTCCTGTAGAAGGTCCACCTGACATTCA  900

seq1  GCACCCAGTGAGCCACCGGCAGGTGGCCAGAGTGGGCTCAGAAGGGTCTC  950
      ||||||||||||||||||||| ||||||||||||||||||||  ||||| 
seq2  GCACCCAGTGAGCCACCGGCA-GTGGCCAGAGTGGGCTCAGA--GGTCT-  946

seq1  CAGGATGGAAGCTAGAAGGGCTACACATGTATACTCTGCATTCCTAAAAA  1000
      |||||| |||||||||   ||||||||||||||||||||||  |||||| 
seq2  CAGGAT-GAAGCTAGA--CGCTACACATGTATACTCTGCAT--CTAAAA-  990

seq1  GGCAGGGTAGGTTTCCCAACACTGCTTGCTGTTTGATGCGGCCCCTGG  1048
       ||| |||||  ||||||||||||| ||||| ||||||||   |||||
seq2  -GCA-GGTAG--TTCCCAACACTGC-TGCTG-TTGATGCG---CCTGG  1029