BAC Information

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BAC

Clone NameB6Ng01-155M20
Chromosome9 (Build37)
Map Location 122,690,785 - 122,790,024
singlet/doubletdoublet
Overlap geneLOC671232, D9Ertd402e, Zfp445
Upstream geneKbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218
Downstream geneLOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155M20.bB6Ng01-155M20.g
ACCDH950483DH950484
length704962
definitionDH950483|Mus musculus domesticus DNA, BAC clone: B6Ng01-155M20, 5' end.DH950484|Mus musculus domesticus DNA, BAC clone: B6Ng01-155M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,789,323 - 122,790,024)(122,690,785 - 122,691,752)
sequence
gaattctttttatttacaaagatgggaatattccataggctataggaggg
gtgtgggaggggtaaatatgttggagttgttctttaatgagctgaataag
agcttctaatttctccttgggtaaaggccattgttcaacggagatacact
catttgagacccagtcaaggcagggagtatcatatctgttagaatggctc
ttagaattcagggtggtctttgggaggatgtttgctatagtcctctctct
ggatatatccactttccttgttactgacaagcaccacagattgtttatta
ataaacaatatcgtggtatattaagggcagcatgaaggctcaggagaatg
gatttggtccaagggtcatgaaaaccatcttctcatactggctgtctaat
cttttaattcattggcctggtaaggataccagtcttgtggctgagagtga
gtgttttgaacattaacagggaaagccaaggtattatttccattgtaggc
atgtttgaaggagtttctaatcttgcataattgttgtggtaatttttagg
gggcagaagggatgaagcctttaagagtttttgagtatccttagtggatg
aggcatgtgggccataaggcaccagtgggggataaagagaaagtggttat
gtgagggtgtcaggggctatttttctgtctggttattcgatggctccttc
caag
gaattctttctctgaaatacttaaagtcacaacaaaataaatcagtatat
aattagaaagttgtaactaaaataaagtagttaggaattggtttaaaatt
tggcattaagcaaaatgagaaataaaattttaatgctacctaaaacacat
taaaaataaatgtgtacgtatgtatgtgcatatatggaaactagaggtca
gcatcactttccagcttgcttaggccactgcccactcctgtctctacctc
actagcactgggattgcaggcctatgtttctgtgcctcgcttattacagg
ggtgctgaagatccaaatttaggtcctcccgcttgtatagcaagcatttt
accagctgagttacatcttcaattgccaagtttaacttttcttgaatgct
tcaaaatacctgataagcaccaacaagcactagatgaaaacaggtgcggt
ggcaaatgtctgtacttctagtcctccaaaggtggaggcaggggaatcaa
aagtaatgtttgaggccaggctaggcaacatgagctcctgccttaaaaaa
aaaaaaaaaaaaaaaaaaaagtatgtcaagcacagcagttaaagggaacc
agagaatgtctaacaatgatttggtttgtcttggggccagggggtgtttt
accgaggttgttggttgcacagttagtatggagccattattcctagaaat
tgtttaatgtagttttcagcatctggaggctttcagagtccagcaatgac
aatataatatttccttgaatgtttttgctcctgattctagcagtataata
taccctatccaataaactacagacccagagaaaacagaaattcagagttt
atttatgttcataaataggctgttacctaacctagcttataagacatact
aatgcttatcctagttttgagcatttaaaggatagtttttattgtttttg
gggggaggggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_122789323_122790024
seq2: B6Ng01-155M20.b_43_746 (reverse)

seq1  CTTGG-AGGAGCCATCGAATATACCAGACAG-AAAATAGCCCCTGACACC  48
      ||||| ||||||||||||||| ||||||||| ||||||||||||||||||
seq2  CTTGGAAGGAGCCATCGAATA-ACCAGACAGAAAAATAGCCCCTGACACC  49

seq1  CTCACATAACCAC-TTCTCTTTATCCCCCACTGCTGCCTTATGGCCCACA  97
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  CTCACATAACCACTTTCTCTTTATCCCCCACTGGTGCCTTATGGCCCACA  99

seq1  TGCCTCATCCACTAAGGATACTCAAAAACTCTTAAAGGCTTCATCCCTTC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCATCCACTAAGGATACTCAAAAACTCTTAAAGGCTTCATCCCTTC  149

seq1  TGCCCCCTAAAAATTACCACAACAATTATGCAAGATTAGAGACTCCTTCA  197
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGCCCCCTAAAAATTACCACAACAATTATGCAAGATTAGAAACTCCTTCA  199

seq1  AACATGCCTACAATGGAAATAATACCTTGGCTTTCCCTGTTAATGTTCAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCCTACAATGGAAATAATACCTTGGCTTTCCCTGTTAATGTTCAA  249

seq1  AACACTCACTCTCAGCCACAAGACTGGTATCCTTACCAGGCCAATGAATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCACTCTCAGCCACAAGACTGGTATCCTTACCAGGCCAATGAATT  299

seq1  AAAAGATTAGACAGCCAGTATGAGAAGATGGTTTTCATGACCCTTGGACC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTAGACAGCCAGTATGAGAAGATGGTTTTCATGACCCTTGGACC  349

seq1  AAATCCATTCTCCTGAGCCTTCATGCTGCCCTTAATATACCACGATATTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCATTCTCCTGAGCCTTCATGCTGCCCTTAATATACCACGATATTG  399

seq1  TTTATTAATAAACAATCTGTGGTGCTTGTCAGTAACAAGGAAAGTGGATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAATAAACAATCTGTGGTGCTTGTCAGTAACAAGGAAAGTGGATA  449

seq1  TATCCAGAGAGAGGACTATAGCAAACATCCTCCCAAAGACCACCCTGAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGAGAGAGGACTATAGCAAACATCCTCCCAAAGACCACCCTGAAT  499

seq1  TCTAAGAGCCATTCTAACAGATATGATACTCCCTGCCTTGACTGGGTCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAGCCATTCTAACAGATATGATACTCCCTGCCTTGACTGGGTCTC  549

seq1  AAATGAGTGTATCTCCGTTGAACAATGGCCTTTACCCAAGGAGAAATTAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTGTATCTCCGTTGAACAATGGCCTTTACCCAAGGAGAAATTAG  599

seq1  AAGCTCTTATTCAGCTCATTAAAGAACAACTCCAACATATTTACCCCTCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTTATTCAGCTCATTAAAGAACAACTCCAACATATTTACCCCTCC  649

seq1  CACACCCCTCCTATAGCCTATGGAATATTCCCATCTTTGTAAATAAAAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCCTCCTATAGCCTATGGAATATTCCCATCTTTGTAAATAAAAAG  699

seq1  AATTC  702
      |||||
seq2  AATTC  704

seq1: chr9_122690785_122691752
seq2: B6Ng01-155M20.g_66_1027

seq1  GAATTCTTTCTCTGAAATACTTAAAGTCACAACAAAATAAATCAGTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCTGAAATACTTAAAGTCACAACAAAATAAATCAGTATAT  50

seq1  AATTAGAAAGTTGTAACTAAAATAAAGTAGTTAGGAATTGGTTTAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAAAGTTGTAACTAAAATAAAGTAGTTAGGAATTGGTTTAAAATT  100

seq1  TGGCATTAAGCAAAATGAGAAATAAAATTTTAATGCTACCTAAAACACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTAAGCAAAATGAGAAATAAAATTTTAATGCTACCTAAAACACAT  150

seq1  TAAAAATAAATGTGTACGTATGTATGTGCATATATGGAAACTAGAGGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAATGTGTACGTATGTATGTGCATATATGGAAACTAGAGGTCA  200

seq1  GCATCACTTTCCAGCTTGCTTAGGCCACTGCCCACTCCTGTCTCTACCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACTTTCCAGCTTGCTTAGGCCACTGCCCACTCCTGTCTCTACCTC  250

seq1  ACTAGCACTGGGATTGCAGGCCTATGTTTCTGTGCCTCGCTTATTACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCACTGGGATTGCAGGCCTATGTTTCTGTGCCTCGCTTATTACAGG  300

seq1  GGTGCTGAAGATCCAAATTTAGGTCCTCCCGCTTGTATAGCAAGCATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGAAGATCCAAATTTAGGTCCTCCCGCTTGTATAGCAAGCATTTT  350

seq1  ACCAGCTGAGTTACATCTTCAATTGCCAAGTTTAACTTTTCTTGAATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTGAGTTACATCTTCAATTGCCAAGTTTAACTTTTCTTGAATGCT  400

seq1  TCAAAATACCTGATAAGCACCAACAAGCACTAGATGAAAACAGGTGCGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATACCTGATAAGCACCAACAAGCACTAGATGAAAACAGGTGCGGT  450

seq1  GGCAAATGTCTGTACTTCTAGTCCTCCAAAGGTGGAGGCAGGGGAATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATGTCTGTACTTCTAGTCCTCCAAAGGTGGAGGCAGGGGAATCAA  500

seq1  AAGTAATGTTTGAGGCCAGGCTAGGCAACATGAGCTCCTGCCTTAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATGTTTGAGGCCAGGCTAGGCAACATGAGCTCCTGCCTTAAAAAA  550

seq1  AAAAAAAAAAAAAAAAAAAAGTATGTCAAGCACAGCAGTTAAAGGGAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAGTATGTCAAGCACAGCAGTTAAAGGGAACC  600

seq1  AGAGAATGTCTAACAATGATTTGGTTTGTCTTGGGGCCAGGGGGTGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGTCTAACAATGATTTGGTTTGTCTTGGGGCCAGGGGGTGTTTT  650

seq1  ACCGAGGTTGTTGGTTGCACAGTTAGTATGGAGCCATTATTCCTAGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGGTTGTTGGTTGCACAGTTAGTATGGAGCCATTATTCCTAGAAAT  700

seq1  TGTTTAATGTAG-TTTCAGCATCTGGAGGCTTTCAGAGTCCAGCAATGAC  749
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATGTAGTTTTCAGCATCTGGAGGCTTTCAGAGTCCAGCAATGAC  750

seq1  AATATAATATTTCCTTGAATGTTTTTGCTCCTGATTCTAGCAGTATAATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATATTTCCTTGAATGTTTTTGCTCCTGATTCTAGCAGTATAATA  800

seq1  TACCCTATCCAATAAACTACAGACCCAGAGAAAACAGAAATTCAGAGTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTATCCAATAAACTACAGACCCAGAGAAAACAGAAATTCAGAGTTT  850

seq1  ATTTTATGTTCATAAATAGGCTGTTAACCTAACCTAGCTTATTAAGACAT  899
      | ||||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  A-TTTATGTTCATAAATAGGCTGTT-ACCTAACCTAGCTTA-TAAGACAT  897

seq1  ACTAATGCTTATCCTAGTTTTTGAGCAATTTTAAAGGATAGTTTTTATTG  949
      ||||||||||||||||| |||||||||  |||||||||||||||||||| 
seq2  ACTAATGCTTATCCTAG-TTTTGAGCA--TTTAAAGGATAGTTTTTATT-  943

seq1  GTTTTTTGGGGGAGGGGAT  968
      |||||| ||||||||||||
seq2  GTTTTTGGGGGGAGGGGAT  962