BAC Information

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BAC

Clone NameB6Ng01-155P13
Chromosome9 (Build37)
Map Location 119,419,564 - 119,596,901
singlet/doubletdoublet
Overlap geneScn5a, Scn10a
Upstream geneGolga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1
Downstream geneScn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155P13.bB6Ng01-155P13.g
ACCDH950602DH950603
length1,1921,148
definitionDH950602|Mus musculus domesticus DNA, BAC clone: B6Ng01-155P13, 5' end.DH950603|Mus musculus domesticus DNA, BAC clone: B6Ng01-155P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,419,564 - 119,420,793)(119,595,750 - 119,596,901)
sequence
gaattcaaccagcttaaattttgttttatgtttagtatttttgagtcagt
ttcttgcacatggctgataatttttttaagatcagagtccttttcctttt
agaaagtgaattttatccagttacatttattattaaaatatacttgatct
tgcttggctgtctaatatttttttattttttatatacttcctcttttttt
ccctcctttttctttctctcttccttccttctctctctccttcctttctc
tctctctctttctttctttctttctttctttctttctttctttctttctt
tctttctttctttctttctttctttctctctttcaataaggtctctgttt
tcttaaatttctcccctcagcactttggaaggaatactgtttgctttctc
ttaagcaagtctataactttcaacaacacacacagacttcttttccccag
tatatcattgacgtggtttttcagcaacagtgcttggctgactaccctgg
ttaaattcaccagctgcttgccaaaactcctcctcacttatgccagccta
agatcttcccccacagcccagactaaacggctctggctgcccttgtttgt
ggctgtttaaaaacaaaacttgttaacatattgtcaagccatacttctct
gaagcctacggagccttggctctggctgcagatggtaaaacagcggggcc
ggctgcaagtcatggctccaggcccactctaaagcagggaggggctcaca
cagtgctccttcttctgttgccaacaacacacgtgtctgctccccacctc
ctctgagttactccctgttcattggcccctccctcaaccatctcagcctg
acccatctttgtagaagcctataggcccagagcttgtgcctgtaagccag
atgggaattttctagagggtctcactgctctcttggctgtctcaccgtga
gtctcatgcttactcagggagtcctccttagctgctctctcacgtgtctc
acactcagagtcttccttcattccactctgttctactcgtgccatcttga
ccttccaactgtagaatctgttctcagtagatagaaaaatctggaggcag
accaaaggcttggaaagacatcgataaacaaaggttaaagtcacatctgc
ctgattcacacacagaactggggccttgaaggttgggggtca
gaattctgttgcctctctgactttgcaatggtcaggtttcttctctgtac
ctttcccccaagttcatgcatgattttaaacttcaaggcagtgtagatta
gtggttatcaaccttaactccactttggaactttaagaaggtcttttaaa
actcagatgcctaaagggactgatttcattcaactccaatgccctgggca
agtccttacagaaaagtatgtagagcacctaaaatatccaacataaccta
gagagaatctgttagcattagagctggctcagcagagcctctcccacagg
gctggagctcagttcctgacacgcacactgggcagctggcaactgtctgt
gtgtgcgcacacatgcgcgtgagtgtggctgcccacagaggccagctccc
gtggatccaacaccctcttctggcctccatgggcacccatgctcacatgc
gtgtgaacacacacacacataacagacacacatgtacacacatacataat
tacaaaaatagatttttaaaatctactggaattaataatactatatacat
caagatagctgtgtgaattaatatacattaatcagctatgtatgtttgta
gcagtcacaagctggaaataaaataaattttgaagtatcctttatactgg
catttcaaaatatcaagctcctagggagaaaaaaaaaaggatatcaaaac
attgagtaaattacagaaacaaccccccaaaacagggagctaatgttatg
ttgttagactccaagtctcaatattgtagaaactgcacagatgactaatc
aatttagtgagatttccaatgccgtctcaataagcatttatggcattttt
tggcacactggctctgaatttatgtgggaaatacaaagagtaaattatag
tcaagacacttctgaggaaggaaagcaaggaagaagaaatccatcccact
ggggtcaaattgagctacgaagtcaatgattgccgcgaggttagcaagac
tctaaacagagcagccgtatgttgtgtgcagcatttggcttggaataaag
gttcctcccagaacagggagggtcagtcctgcgagaaaggcggtgaagaa
tcaggaaatctagagatatatcaaccagtaagaactcagcactgtact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_119419564_119420793
seq2: B6Ng01-155P13.b_45_1236

seq1  GAATTCAACCAGCTTAAATTTTGTTTTATGTTTAGTATTTTTGAGTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCAGCTTAAATTTTGTTTTATGTTTAGTATTTTTGAGTCAGT  50

seq1  TTCTTGCACATGGCTGATAATTTTTTTAAGATCAGAGTCCTTTTCCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCACATGGCTGATAATTTTTTTAAGATCAGAGTCCTTTTCCTTTT  100

seq1  AGAAAGTGAATTTTATCCAGTTACATTTATTATTAAAATATACTTGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGAATTTTATCCAGTTACATTTATTATTAAAATATACTTGATCT  150

seq1  TGCTTGGCTGTCTAATATTTTTTTATTTTTTATATACTTCCTCTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGCTGTCTAATATTTTTTTATTTTTTATATACTTCCTCTTTTTTT  200

seq1  CCCTCCTTTTTCTTTCTCTCTTCCTTCCTTCTCTCTCTCCTTCCTTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTTTTTCTTTCTCTCTTCCTTCCTTCTCTCTCTCCTTCCTTTCTC  250

seq1  TCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  300

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTTTCAATAAGGTCTCTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTTTCAATAAGGTCTCTGTTT  350

seq1  TCTTAAATTTCTCCCCTCAGCACTTTGGAAGGAATACTGTTTGCTTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAATTTCTCCCCTCAGCACTTTGGAAGGAATACTGTTTGCTTTCTC  400

seq1  TTAAGCAAGTCTATAACTTTCAACAACACACACAGACTTCTTTTCCCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAAGTCTATAACTTTCAACAACACACACAGACTTCTTTTCCCCAG  450

seq1  TATATCATTGACGTGGTTTTTCAGCAACAGTGCTTGGCTGACTACCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCATTGACGTGGTTTTTCAGCAACAGTGCTTGGCTGACTACCCTGG  500

seq1  TTAAATTCACCAGCTGCTTGCCAAAACTCCTCCTCACTTATGCCAGCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTCACCAGCTGCTTGCCAAAACTCCTCCTCACTTATGCCAGCCTA  550

seq1  AGATCTTCCCCCACAGCCCAGACTAAACGGCTCTGGCTGCCCTTGTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTCCCCCACAGCCCAGACTAAACGGCTCTGGCTGCCCTTGTTTGT  600

seq1  GGCTGTTTAAAAACAAAACTTGTTAACATATTGTCAAGCCATACTTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTTAAAAACAAAACTTGTTAACATATTGTCAAGCCATACTTCTCT  650

seq1  GAAGCCTACGGAGCCTTGGCTCTGGCTGCAGATGGTAAAACAGCGGGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTACGGAGCCTTGGCTCTGGCTGCAGATGGTAAAACAGCGGGGCC  700

seq1  GGCTGCAAGTCATGGCTCCAGGCCCACTCTAAAGCAGGGAGGGGCTCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCAAGTCATGGCTCCAGGCCCACTCTAAAGCAGGGAGGGGCTCACA  750

seq1  CAGTGCTCCTTCTTCTGTTGCCAACAACACACGTGTCTGCTCCCCACCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCCTTCTTCTGTTGCCAACAACACACGTGTCTGCTCCCCACCTC  800

seq1  CTCTGAGTTACTCCCTGTTCATTGGCCCCTCCCTCAACCATCTCAGGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTCTGAGTTACTCCCTGTTCATTGGCCCCTCCCTCAACCATCTCA-GCCT  849

seq1  GACCCATCTTTGTAGAAGGCCTATAGGCCCAGAGCTTGTGCCTGTAAGCC  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GACCCATCTTTGTAGAA-GCCTATAGGCCCAGAGCTTGTGCCTGTAAGCC  898

seq1  AGATGGGAATTTTCTAGAGGGTCTCACTGCTCCTCCTTGGCTGTCCTCCA  950
      ||||||||||||||||||||||||||||||||   ||||||||||   ||
seq2  AGATGGGAATTTTCTAGAGGGTCTCACTGCTC--TCTTGGCTGTC--TCA  944

seq1  CCGTGAGTCCTCCATGCTTACTCCAGGGAGTCCTCCCTAGCTGCCTCTCC  1000
      |||||||||   |||||||||| ||||||||||||| |||||| ||||| 
seq2  CCGTGAGTC--TCATGCTTACT-CAGGGAGTCCTCCTTAGCTG-CTCTC-  989

seq1  TCCACGTGTCCTCACCACTCAAGAGTCCTCCCTTCCATTCCCACTCTGTT  1050
        ||||||| |||| ||||| |||||| |||  | |||| |||||||| |
seq2  -TCACGTGT-CTCA-CACTC-AGAGTCTTCC--TTCATT-CCACTCTG-T  1031

seq1  TCTACCTCGTGCTCATCTTTGACCTCTCAAACTGGTAGAATCTGGTTTCT  1100
      |||| ||||||| |||| ||||||| || |||| ||||||||||  ||||
seq2  TCTA-CTCGTGC-CATC-TTGACCT-TCCAACT-GTAGAATCTG--TTCT  1074

seq1  CCAAGTAGAGTAGAAGATCCTGAGGCCAGACACAGAGGGCTTGGAAAAGA  1150
      |  |||||| ||||| |  |||  | ||||| || | ||||||| |||||
seq2  C--AGTAGA-TAGAAAAATCTGGAGGCAGAC-CA-AAGGCTTGG-AAAGA  1118

seq1  CCATCGAATAAACAAAAGGTTAAAGTCACATCTGCCTGAGTTCACACACC  1200
       ||||| |||||| ||||||||||||||||||||||||| |||||||| |
seq2  -CATCG-ATAAAC-AAAGGTTAAAGTCACATCTGCCTGA-TTCACACA-C  1163

seq1  AGACCTGGGGCTTTTGAATGTTGGGGGTGA  1230
      ||| |||||||  ||||| ||||||||| |
seq2  AGAACTGGGGC-CTTGAAGGTTGGGGGTCA  1192

seq1: chr9_119595750_119596901
seq2: B6Ng01-155P13.g_68_1215 (reverse)

seq1  AGTACAGTGCTGAGTTTCTTACTTGGTTGGATTATTCCTCTAGATCTCCT  50
      |||||||||||||| ||||||| ||||||   |||  |||||||| ||||
seq2  AGTACAGTGCTGAG-TTCTTAC-TGGTTG--ATATATCTCTAGATTTCCT  46

seq1  GATTCTTCACCGCCCTTCACCGCA-GACTGACCCTCCCTGTTCTGTGGAG  99
      |||||||||||||| |||  |||| |||||||||||||||||||| ||||
seq2  GATTCTTCACCGCCTTTC-TCGCAGGACTGACCCTCCCTGTTCTG-GGAG  94

seq1  TGACCTTTATCACAGGCCAAATGCCTGCACAC-ACATACGGCTGCTCTGT  148
        ||||||||  || |||||||| |||||||| |||||||||||||||||
seq2  GAACCTTTATTCCAAGCCAAATG-CTGCACACAACATACGGCTGCTCTGT  143

seq1  TTAGAGTCTGGCTAACCTCGCGGCAATCAATGGCTTCGTAGCTCAATTTG  198
      ||||||||| ||||||||||||||||||| || |||||||||||||||||
seq2  TTAGAGTCTTGCTAACCTCGCGGCAATCATTGACTTCGTAGCTCAATTTG  193

seq1  ACCCCAGTGGGGT-GATTTCTTCTTCCTTGCTTTCCTTCCTCAGAAGTGT  247
      ||||||||||| | ||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGTGGGATGGATTTCTTCTTCCTTGCTTTCCTTCCTCAGAAGTGT  243

seq1  CTTGACTATAATTTACTCTTTGTATTT-CCACATACATTTCAGAGCCAGT  296
      ||||||||||||||||||||||||||| ||||||| | ||||||||||||
seq2  CTTGACTATAATTTACTCTTTGTATTTCCCACATA-AATTCAGAGCCAGT  292

seq1  GTGCCAAAAAATGCCATAAATGCTTATTGAGACGGCATTGGAAATCTCAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAAAAAATGCCATAAATGCTTATTGAGACGGCATTGGAAATCTCAC  342

seq1  TAAATTGATTAGTCATCTGTGCAGTTTCTACAATATTGAGACTTGGAGTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGATTAGTCATCTGTGCAGTTTCTACAATATTGAGACTTGGAGTC  392

seq1  TAACAACATAACATTAGCTCCCTGTTTTGGGGGGTTGTTTCTGTAATTTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACATAACATTAGCTCCCTGTTTTGGGGGGTTGTTTCTGTAATTTA  442

seq1  CTCAATGTTTTGATATCCTTTTTTTTTTCTCCCTAGGAGCTTGATATTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGTTTTGATATCCTTTTTTTTTTCTCCCTAGGAGCTTGATATTTT  492

seq1  GAAATGCCAGTATAAAGGATACTTCAAAATTTATTTTATTTCCAGCTTGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCCAGTATAAAGGATACTTCAAAATTTATTTTATTTCCAGCTTGT  542

seq1  GACTGCTACAAACATACATAGCTGATTAATGTATATTAATTCACACAGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTACAAACATACATAGCTGATTAATGTATATTAATTCACACAGCT  592

seq1  ATCTTGATGTATATAGTATTATTAATTCCAGTAGATTTTAAAAATCTATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGATGTATATAGTATTATTAATTCCAGTAGATTTTAAAAATCTATT  642

seq1  TTTGTAATTATGTATGTGTGTACATGTGTGTCTGTTATGTGTGTGTGTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATTATGTATGTGTGTACATGTGTGTCTGTTATGTGTGTGTGTGT  692

seq1  TCACACGCATGTGAGCATGGGTGCCCATGGAGGCCAGAAGAGGGTGTTGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACGCATGTGAGCATGGGTGCCCATGGAGGCCAGAAGAGGGTGTTGG  742

seq1  ATCCACGGGAGCTGGCCTCTGTGGGCAGCCACACTCACGCGCATGTGTGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACGGGAGCTGGCCTCTGTGGGCAGCCACACTCACGCGCATGTGTGC  792

seq1  GCACACACAGACAGTTGCCAGCTGCCCAGTGTGCGTGTCAGGAACTGAGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACAGACAGTTGCCAGCTGCCCAGTGTGCGTGTCAGGAACTGAGC  842

seq1  TCCAGCCCTGTGGGAGAGGCTCTGCTGAGCCAGCTCTAATGCTAACAGAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCCTGTGGGAGAGGCTCTGCTGAGCCAGCTCTAATGCTAACAGAT  892

seq1  TCTCTCTAGGTTATGTTGGATATTTTAGGTGCTCTACATACTTTTCTGTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTAGGTTATGTTGGATATTTTAGGTGCTCTACATACTTTTCTGTA  942

seq1  AGGACTTGCCCAGGGCATTGGAGTTGAATGAAATCAGTCCCTTTAGGCAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTGCCCAGGGCATTGGAGTTGAATGAAATCAGTCCCTTTAGGCAT  992

seq1  CTGAGTTTTAAAAGACCTTCTTAAAGTTCCAAAGTGGAGTTAAGGTTGAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTTAAAAGACCTTCTTAAAGTTCCAAAGTGGAGTTAAGGTTGAT  1042

seq1  AACCACTAATCTACACTGCCTTGAAGTTTAAAATCATGCATGAACTTGGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTAATCTACACTGCCTTGAAGTTTAAAATCATGCATGAACTTGGG  1092

seq1  GGAAAGGTACAGAGAAGAAACCTGACCATTGCAAAGTCAGAGAGGCAACA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGTACAGAGAAGAAACCTGACCATTGCAAAGTCAGAGAGGCAACA  1142

seq1  GAATTC  1152
      ||||||
seq2  GAATTC  1148