BAC Information

Click to search

BAC

Clone NameB6Ng01-156A12
Chromosome9 (Build37)
Map Location 70,639,332 - 70,775,383
singlet/doubletdoublet
Overlap geneLipc, LOC100041622
Upstream geneBnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1
Downstream geneLOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, Tcf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156A12.bB6Ng01-156A12.g
ACCDH950647DH950648
length5881,018
definitionDH950647|Mus musculus domesticus DNA, BAC clone: B6Ng01-156A12, 5' end.DH950648|Mus musculus domesticus DNA, BAC clone: B6Ng01-156A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,639,332 - 70,639,925)(70,774,348 - 70,775,383)
sequence
agtgctagctgggactacacagtgagatgctgtatcagaaaagcaaaaac
tcattataaaagaagggcatgaaactaaagaggaactaatagagctggag
aatgaggaaggggaggaagaggaagaagagaatgggagaaagggatgaga
atatagcatatgcaaatgtgaacacgtcatagtgaaagcctttggtgcaa
ttaatatgtgctatcaaagatttaccttccagcatactatcaagactaaa
acctcagttcatggctgtagaatcaatatgcaaaaaaagtcacctccctt
aaagatattggctgatatcatgaaaataagagggttggcaagatggctta
cttgccaccaagcctcataatctgagtcctatccctggaggccatatagg
ggagaagaaaagccattcctggaaggtgtcctctgacctgacacatgatc
tgttggcatgatgcgaacatctatgcacacaatataaataattcataaaa
aggcaattagtacaaaagttgaactatgatcttagtaagtgatacccagt
aatggaataagcaatgcactgcggctatgggagtctct
gaattctgaggcaagaatggtcagctaagaaggcattttaaacaagtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaact
attcacctgcatgtatgtctggtacaatgtgcagactgtgcccaagaagg
ccagaagatggcattggatcctctggacctggaaatgcaaacaggtgtga
gctgacatgtgggtagtgagaaatgagcctaagtcctctgcaaaagcagc
cagcgctcttagccgctaggccatctctccagccccctggttcaaggggt
agagaagggaaagaagtaagagaatatcataaggaaaaaggaaagcgtat
gagcagttatgacttgaagaatgagaatgaaattgagaattcatgagact
tcggttggcccagagtaagatacagtgaaaggagctgaaacaagaacccc
caatccaccctcaagagctttcactctgaccctggagcctgggctgccca
gatgcaggttgacatttgagaaggggagatagagcttgctagctgccttc
cacaacgcctagagaaccttatctcccagcctggctgaaaccctggccac
tcccttctggggagaaactgtatcagcaggaaagggcatgggtggagtcc
tgaactcaacagttttgcagtctccctaggccctcacacgaatgtttggc
tctttcttcagagcaaactccagctttgggcagatctctgaagtttcttg
ttcttgttattccaaatcctaagtcatgggattcccttgaacttaaccag
tatcgaatcagaatcgtccatctaaaaatctcttacttgggaaagagagc
tatgtcaatctacactacacttactgatcaatagcaattcacagggaagc
gctcactcccttccgcgtaaccacttgaggtttactgtaacctgtcacat
actggacaggcacaaacatcccacttggaagctgttggtgctttcactgt
attgtactgctctctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_70639332_70639925
seq2: B6Ng01-156A12.b_48_641

seq1  GAATTCAGTGCTAGCTGGGACTACACAGTGAGATGCTGTATCAGAAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCTAGCTGGGACTACACAGTGAGATGCTGTATCAGAAAAGC  50

seq1  AAAAACTCATTATAAAAGAAGGGCATGAAACTAAAGAGGAACTAATAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTCATTATAAAAGAAGGGCATGAAACTAAAGAGGAACTAATAGAG  100

seq1  CTGGAGAATGAGGAAGGGGAGGAAGAGGAAGAAGAGAATGGGAGAAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAATGAGGAAGGGGAGGAAGAGGAAGAAGAGAATGGGAGAAAGGG  150

seq1  ATGAGAATATAGCATATGCAAATGTGAACACGTCATAGTGAAAGCCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATATAGCATATGCAAATGTGAACACGTCATAGTGAAAGCCTTTG  200

seq1  GTGCAATTAATATGTGCTATCAAAGATTTACCTTCCAGCATACTATCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAATTAATATGTGCTATCAAAGATTTACCTTCCAGCATACTATCAAG  250

seq1  ACTAAAACCTCAGTTCATGGCTGTAGAATCAATATGCAAAAAAAGTCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAACCTCAGTTCATGGCTGTAGAATCAATATGCAAAAAAAGTCACC  300

seq1  TCCCTTAAAGATATTGGCTGATATCATGAAAATAAGAGGGTTGGCAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTAAAGATATTGGCTGATATCATGAAAATAAGAGGGTTGGCAAGAT  350

seq1  GGCTTACTTGCCACCAAGCCTCATAATCTGAGTCCTATCCCTGGAGGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTACTTGCCACCAAGCCTCATAATCTGAGTCCTATCCCTGGAGGCCA  400

seq1  TATAGGGGAGAAGAAAAGCCATTCCTGGAAGGTGTCCTCTGACCTGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGGAGAAGAAAAGCCATTCCTGGAAGGTGTCCTCTGACCTGACAC  450

seq1  ATGAGCTGTTGGCATGATGCGAACATCTATGCACACAATATAAATAATTC  500
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTGTTGGCATGATGCGAACATCTATGCACACAATATAAATAATTC  500

seq1  ATAAAAAGGCAATTAGTACAAAAGTTGAACTATGATCTTAGTAAGTGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGGCAATTAGTACAAAAGTTGAACTATGATCTTAGTAAGTGATA  550

seq1  CCCAGTAATGGAATAAGCAATGCACTGCGGCTATGGGAGTCTCT  594
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTAATGGAATAAGCAATGCACTGCGGCTATGGGAGTCTCT  594

seq1: chr9_70774348_70775383
seq2: B6Ng01-156A12.g_69_1086 (reverse)

seq1  GAAATGAGAGCAGTAACTAATACAGTTGATAAGCACCAACATCTTCCAAG  50
      |||| ||||||||||   ||||||| ||| ||||||||||| ||||||||
seq2  GAAA-GAGAGCAGTA--CAATACAG-TGA-AAGCACCAACAGCTTCCAAG  45

seq1  TGGGATGTTTGTGCCTGTCCAGTATTGTTGACAGGGTTACAGTAAAACCT  100
      |||||||||||||||||||||||||   ||||| ||||||||| ||||||
seq2  TGGGATGTTTGTGCCTGTCCAGTAT--GTGACA-GGTTACAGT-AAACCT  91

seq1  CAGTGGGTTAACGCAGATGGGAGTGAGCGCTTCACTGTGAAATTGCTATT  150
      ||   |||| |||| || ||||||||||||||| ||||| ||||||||||
seq2  CAAGTGGTT-ACGCGGAAGGGAGTGAGCGCTTCCCTGTG-AATTGCTATT  139

seq1  GATCAGTAAGTGTAGTGTAAGATTTGCACATAGCTCTCTTTTCCAAGTAA  200
      |||||||||||||||||| |||||   |||||||||||||| ||||||||
seq2  GATCAGTAAGTGTAGTGT-AGATT--GACATAGCTCTCTTTCCCAAGTAA  186

seq1  GAGATTTTTAAGATGGACGATTTCTGATTCGATACTGGTTAAGTTTCAAG  250
      ||||||||| |||||||||| |||||||||||||||||||||| ||||||
seq2  GAGATTTTT-AGATGGACGA-TTCTGATTCGATACTGGTTAAG-TTCAAG  233

seq1  GGAATCCCATGACTTAGGATTTGGAATAACAATGAACAAGAAAACTTCAG  300
      |||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  GGAATCCCATGACTTAGGATTTGGAATAACAA-GAACAAG-AAACTTCAG  281

seq1  AGATCTGCCCAAAGCTGGAGTTTGCTCTGAAGAAAGAGCCAAACATTCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGCCCAAAGCTGGAGTTTGCTCTGAAGAAAGAGCCAAACATTCGT  331

seq1  GTGAGGGCCTAGGGAGACTGCAAAACTGTTGAGTTCAGGACTCCACCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGCCTAGGGAGACTGCAAAACTGTTGAGTTCAGGACTCCACCCAT  381

seq1  GCCCTTTCCTGCTGATACAGTTTCTCCCCAGAAGGGAGTGGCCAGGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTCCTGCTGATACAGTTTCTCCCCAGAAGGGAGTGGCCAGGGTTT  431

seq1  CAGCCAGGCTGGGAGATAAGGTTCTCTAGGCGTTGTGGAAGGCAGCTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGCTGGGAGATAAGGTTCTCTAGGCGTTGTGGAAGGCAGCTAGC  481

seq1  AAGCTCTATCTCCCCTTCTCAAATGTCAACCTGCATCTGGGCAGCCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTATCTCCCCTTCTCAAATGTCAACCTGCATCTGGGCAGCCCAGG  531

seq1  CTCCAGGGTCAGAGTG-AAGCTCTTGAGGGTGGATTGGGGGTTCTTGTTT  599
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTCCAGGGTCAGAGTGAAAGCTCTTGAGGGTGGATTGGGGGTTCTTGTTT  581

seq1  CAGCTCCTTTCACTGTATCTTACTCTGGGCCAACCGAAGTCTCATGAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTTTCACTGTATCTTACTCTGGGCCAACCGAAGTCTCATGAATT  631

seq1  CTCAATTTCATTCTCATTCTTCAAGTCATAACTGCTCATACGCTTTCCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTTCATTCTCATTCTTCAAGTCATAACTGCTCATACGCTTTCCTT  681

seq1  TTTCCTTATGATATTCTCTTACTTCTTTCCCTTCTCTACCCCTTGAACCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTATGATATTCTCTTACTTCTTTCCCTTCTCTACCCCTTGAACCA  731

seq1  GGGGGCTGGAGAGATGGCCTAGCGGCTAAGAGCGCTGGCTGCTTTTGCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCTGGAGAGATGGCCTAGCGGCTAAGAGCGCTGGCTGCTTTTGCAG  781

seq1  AGGACTTAGGCTCATTTCTCACTACCCACATGTCAGCTCACACCTGTTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTAGGCTCATTTCTCACTACCCACATGTCAGCTCACACCTGTTTG  831

seq1  CATTTCCAGGTCCAGAGGATCCAATGCCATCTTCTGGCCTTCTTGGGCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCAGGTCCAGAGGATCCAATGCCATCTTCTGGCCTTCTTGGGCAC  881

seq1  AGTCTGCACATTGTACCAGACATACATGCAGGTGAATAGTTAACACACAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCACATTGTACCAGACATACATGCAGGTGAATAGTTAACACACAC  931

seq1  ACACACACACACACACACACACACACACACACACACACACACTTGTTTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACTTGTTTAA  981

seq1  AATGCCTTCTTAGCTGACCATTCTTGCCTCAGAATTC  1036
      |||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTCTTAGCTGACCATTCTTGCCTCAGAATTC  1018