BAC Information

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BAC

Clone NameB6Ng01-156L09
Chromosome9 (Build37)
Map Location 85,873,190 - 86,025,027
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666672, BC023892, Ibtk, 4933431K14Rik, EG434426, 9330154J02Rik, Tpbg
Downstream gene2610018I03Rik, Pgm3, Rwdd2, Mod1, Prss35, Snap91, C030002E08Rik, Cyb5r4, LOC666777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156L09.bB6Ng01-156L09.g
ACCDH951144DH951145
length1,0401,136
definitionDH951144|Mus musculus domesticus DNA, BAC clone: B6Ng01-156L09, 5' end.DH951145|Mus musculus domesticus DNA, BAC clone: B6Ng01-156L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,023,974 - 86,025,027)(85,873,190 - 85,874,331)
sequence
gaattcattactaaagcttaatgtgggcagtcaatttttatatggagata
aagaaacaaacgaacaagagaaaatcatcaaaaaaaaaaaaaaaagacta
acaacctctaaaagtcacaattaatctaggtattgatgtgtatagccata
ctatgacatatgtaaagattctacaaaactttcatgaaaacatggctctt
gcttattgctgtcattatttcatcggagtctatagatagttattcttatc
atggtaaactatcatgggaaaccggaggggagtagttctagggaggtcac
cagtgctgtgttaggttgttaacacttatctctactggagcatcatctcc
tgttaagcttttgtcatctcacaagatgtaaaatttgaggacaaaaaccc
atgaatgactcaaaaatctcagtagagcagcagcagcagttctcaacctt
cctaatgccacgaccctttaagataattcttcatgttgtggtgaccccag
ccatagaattttttgttgctacttcatagctgtaaatttgctactgttgt
taatagtaatgtaaatacatgatatgcaggatatctgacatgagatccaa
cccccaaatggctctcaagccacaagctgaaaaccactgagggagtgttt
gagatggaagccctggttggtctggattaagtggtttcagagtacatgaa
atgaaagaaagagaggaacaatgagatcatatagagaggctgagaaaggc
tgttttgttggtagcataatcttgaaacacttgatgtaatagtgacacct
atccaagacttgttttctataatttgtgaaatatccttaatatgttagta
tgaacaaaaaagaaatgaccccatgggaaatgtgggtgattgtctgagtt
agtacaaattttggtctggtggttgtgtgtcggatgattgagatcataga
ttatcaccttgtaaaaaaattaaaaataaatttctaagtgcctttcagat
attaaactgaatcttaaggtacagttcatcttgttgtaaa
gaattccaggacagactggctatacagagagtttgaggccagacaaggct
acatagtgagaacctgtctcaaaaaatgtaattagaaagtacaacttaaa
aacttgttaattttattgctttatgtgtataaatctctgtatgcatgtat
gtatgagtaccatatgtgtgtactcatgcctagggagggcagaagaagac
attggatcccttgaaactggagttacaggaaattgtaagctacctcatgg
tcctgggacccaaacctgggtcttctgcaaaagaagcactcagctatctc
ttcagtcccaggaaaacataaattttagtaaagagttcatatttaacttt
tcctcctactacaaaagattaataataaatacaatttcttcataggaatt
atgcatataaagtggtgagcattatgacaataacttgggaaagagaaacc
aattactctgctaagtatctgataagatttattatactgtaagagaatat
cctaagacccatcagatcaagaatttcagagatgcaagcttccttgagac
aatctcattttgacttaaacaggtctgtgtagcaacaatcaagggacact
ggttggaaatatcaacagctgtttcttctggcttttctccacaccgttct
ctcaagacttgccaattcttgcagatctagctcatctacttttagttacc
ctaatatttcccatttaggacaggacatggtaatgtatgtccttaaaacc
agaatttggaaggccaaggcaggaagatgacaagttctaggctaccctag
attacatagcaaggcaaagtatttttcacttgtataaacacaatccctaa
atactgtgttagacaggaaaagtgaatccttgtacacattgctgatattt
aaaagcagtgagatgacttctgactttttattagtttttaatgtcacagt
tgtttatgctaaatgaatgctgctagctttaattcccaaacattcgatat
cagtgattgtttaaaatatgaaatttcacttagtagttttctggttcagg
ttggaacaaacttagacattgtctaggcaatctaattttttccctcaggg
ttaacatcgatcatccttaggaattaccatttaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_86023974_86025027
seq2: B6Ng01-156L09.b_48_1087 (reverse)

seq1  TTTACAACAAAGATGAACTGTACCCTTTAAAGATTCAGTTTTTAATATCT  50
      |||||||| |||||||||||||||   | |||||||||  ||||||||||
seq2  TTTACAAC-AAGATGAACTGTACC---TTAAGATTCAG--TTTAATATCT  44

seq1  GGAAAGGGCACCTTAGAAATTTTATTTTGTAATTTTTTTTACAAGGTGAT  100
      |  || |||| |||||||| |||||||| ||| |||||||||||||||||
seq2  G--AAAGGCA-CTTAGAAA-TTTATTTT-TAA-TTTTTTTACAAGGTGAT  88

seq1  AATTCTATGATTCTCAATCATCCGACACACAACCACCAGACCAAGATTTG  150
      || ||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  AA-TCTATGA-TCTCAATCATCCGACACACAACCACCAGACCAAAATTTG  136

seq1  TACTAACTCAGACAATCACCCACATTTCCCATGGGGTCATTTCTTTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAACTCAGACAATCACCCACATTTCCCATGGGGTCATTTCTTTTTTG  186

seq1  TTCATACTAACATATTAAGGATATTTCACAAATTATAGAAAACAAGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACTAACATATTAAGGATATTTCACAAATTATAGAAAACAAGTCTT  236

seq1  GGATAGGTGTCACTATTACATCAAGTGTTTCAAGATTATGCTACCAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGGTGTCACTATTACATCAAGTGTTTCAAGATTATGCTACCAACAA  286

seq1  AACAGCCTTTCTCAGCCTCTCTATATGATCTCATTGTTCCTCTCTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCTTTCTCAGCCTCTCTATATGATCTCATTGTTCCTCTCTTTCTT  336

seq1  TCATTTCATGTACTCTGAAACCACTTAATCCAGACCAACCAGGGCTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCATGTACTCTGAAACCACTTAATCCAGACCAACCAGGGCTTCCA  386

seq1  TCTCAAACACTCCCTCAGTGGTTTTCAGCTTGTGGCTTGAGAGCCATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAACACTCCCTCAGTGGTTTTCAGCTTGTGGCTTGAGAGCCATTTG  436

seq1  GGGGTTGGATCTCATGTCAGATATCCTGCATATCATGTATTTACATTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGGATCTCATGTCAGATATCCTGCATATCATGTATTTACATTACT  486

seq1  ATTAACAACAGTAGCAAATTTACAGCTATGAAGTAGCAACAAAAAATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAACAGTAGCAAATTTACAGCTATGAAGTAGCAACAAAAAATTCT  536

seq1  ATGGCTGGGGTCACCACAACATGAAGAATTATCTTAAAGGGTCGTGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGGGGTCACCACAACATGAAGAATTATCTTAAAGGGTCGTGGCAT  586

seq1  TAGGAAGGTTGAGAACTGCTGCTGCTGCTCTACTGAGATTTTTGAGTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGGTTGAGAACTGCTGCTGCTGCTCTACTGAGATTTTTGAGTCAT  636

seq1  TCATGGGTTTTTGTCCTCAAATTTTACATCTTGTGAGATGACAAAAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGTTTTTGTCCTCAAATTTTACATCTTGTGAGATGACAAAAGCTT  686

seq1  AACAGGAGATGATGCTCCAGTAGAGATAAGTGTTAACAACCTAACACAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAGATGATGCTCCAGTAGAGATAAGTGTTAACAACCTAACACAGC  736

seq1  ACTGGTGACCTCCCTAGAACTACTCCCCTCCGGTTTCCCATGATAGTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGACCTCCCTAGAACTACTCCCCTCCGGTTTCCCATGATAGTTTA  786

seq1  CCATGATAAGAATAACTATCTATAGACTCCGATGAAATAATGACAGCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATAAGAATAACTATCTATAGACTCCGATGAAATAATGACAGCAAT  836

seq1  AAGCAAGAGCCATGTTTTCATGAAAGTTTTGTAGAATCTTTACATATGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGAGCCATGTTTTCATGAAAGTTTTGTAGAATCTTTACATATGTC  886

seq1  ATAGTATGGCTATACACATCAATACCTAGATTAATTGTGACTTTTAGAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATGGCTATACACATCAATACCTAGATTAATTGTGACTTTTAGAGG  936

seq1  TTGTTAGTCTTTTTTTTTTTTTTTTGATGATTTTCTCTTGTTCGTTTGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGTCTTTTTTTTTTTTTTTTGATGATTTTCTCTTGTTCGTTTGTT  986

seq1  TCTTTATCTCCATATAAAAATTGACTGCCCACATTAAGCTTTAGTAATGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATCTCCATATAAAAATTGACTGCCCACATTAAGCTTTAGTAATGA  1036

seq1  ATTC  1054
      ||||
seq2  ATTC  1040

seq1: chr9_85873190_85874331
seq2: B6Ng01-156L09.g_68_1203

seq1  GAATTCCAGGACAGACTGGCTATACAGAGAGTTTGAGGCCAGACAAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGACTGGCTATACAGAGAGTTTGAGGCCAGACAAGGCT  50

seq1  ACATAGTGAGAACCTGTCTCAAAAAATGTAATTAGAAAGTACAACTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTGAGAACCTGTCTCAAAAAATGTAATTAGAAAGTACAACTTAAA  100

seq1  AACTTGTTAATTTTATTGCTTTATGTGTATAAATCTCTGTATGCATGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTTAATTTTATTGCTTTATGTGTATAAATCTCTGTATGCATGTAT  150

seq1  GTATGAGTACCATATGTGTGTACTCATGCCTAGGGAGGGCAGAAGAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGTACCATATGTGTGTACTCATGCCTAGGGAGGGCAGAAGAAGAC  200

seq1  ATTGGATCCCTTGAAACTGGAGTTACAGGAAATTGTAAGCTACCTCATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATCCCTTGAAACTGGAGTTACAGGAAATTGTAAGCTACCTCATGG  250

seq1  TCCTGGGACCCAAACCTGGGTCTTCTGCAAAAGAAGCACTCAGCTATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGACCCAAACCTGGGTCTTCTGCAAAAGAAGCACTCAGCTATCTC  300

seq1  TTCAGTCCCAGGAAAACATAAATTTTAGTAAAGAGTTCATATTTAACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCCCAGGAAAACATAAATTTTAGTAAAGAGTTCATATTTAACTTT  350

seq1  TCCTCCTACTACAAAAGATTAATAATAAATACAATTTCTTCATAGGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTACTACAAAAGATTAATAATAAATACAATTTCTTCATAGGAATT  400

seq1  ATGCATATAAAGTGGTGAGCATTATGACAATAACTTGGGAAAGAGAAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATAAAGTGGTGAGCATTATGACAATAACTTGGGAAAGAGAAACC  450

seq1  AATTACTCTGCTAAGTATCTGATAAGATTTATTATACTGTAAGAGAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTCTGCTAAGTATCTGATAAGATTTATTATACTGTAAGAGAATAT  500

seq1  CCTAAGACCCATCAGATCAAGAATTTCAGAGATGCAAGCTTCCTTGAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGACCCATCAGATCAAGAATTTCAGAGATGCAAGCTTCCTTGAGAC  550

seq1  AATCTCATTTTGACTTAAACAGGTCTGTGTAGCAACAATCAAGGGACACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCATTTTGACTTAAACAGGTCTGTGTAGCAACAATCAAGGGACACT  600

seq1  GGTTGGAAATATCAACAGCTGTTTCTTCTGGCTTTTCTCCACACCGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGAAATATCAACAGCTGTTTCTTCTGGCTTTTCTCCACACCGTTCT  650

seq1  CTCAAGACTTGCCAATTCTTGCAGATCTAGCTCATCTAC-TTTAGTTACC  699
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTCAAGACTTGCCAATTCTTGCAGATCTAGCTCATCTACTTTTAGTTACC  700

seq1  CTAATATTTCCCATTTAGGACAGGACATGGTAATGTATGTCCTTAAAACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATTTCCCATTTAGGACAGGACATGGTAATGTATGTCCTTAAAACC  750

seq1  AGAATTTGGAAGGCCAAGGCAGGAAGATGACAAGTTCTAGGCTACCCTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTGGAAGGCCAAGGCAGGAAGATGACAAGTTCTAGGCTACCCTAG  800

seq1  ATTACATAGCAAGGCAAAGTA-TTTTCACTTGTATAAACACAATCCCTAA  848
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATTACATAGCAAGGCAAAGTATTTTTCACTTGTATAAACACAATCCCTAA  850

seq1  ATACTGTGTTAGACAGGAAAAGTGAATCCTTGTACACATTGCTGATATTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTGTTAGACAGGAAAAGTGAATCCTTGTACACATTGCTGATATTT  900

seq1  AAAAGCAGTGAGATGACTTCTTGAACTTTTATTAGTTTTTTAATGTCACA  948
      |||||||||||||||||||| |||  ||||||||| ||||||||||||||
seq2  AAAAGCAGTGAGATGACTTC-TGACTTTTTATTAG-TTTTTAATGTCACA  948

seq1  GTTGTTTATGCTAAATGAATTGCTGCTAGCTTTAATTCCCCAAACATTCG  998
      ||||||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  GTTGTTTATGCTAAATGAA-TGCTGCTAGCTTTAATT-CCCAAACATTCG  996

seq1  ATATCAGTGATTGTTTAAAATATGAAAAATTTCACCTAGTAGTTTTCTGG  1048
      ||||||||||||||||||||||||  ||||||||| ||||||||||||||
seq2  ATATCAGTGATTGTTTAAAATATG--AAATTTCACTTAGTAGTTTTCTGG  1044

seq1  TTCAAGTTGGAACAAAACCTTAGACA-TGTCTAGGCCAATCTACTTTCT-  1096
      |||| |||||||||||  |||||||| |||||||| ||||||| ||| | 
seq2  TTCAGGTTGGAACAAA--CTTAGACATTGTCTAGG-CAATCTAATTTTTT  1091

seq1  -CCTCAGGGTTAACATCCGAATCAT-CTTAGTAATTAACACTTTAAAC  1142
       ||||||||||||||||   ||||| ||||| ||||| || |||||||
seq2  CCCTCAGGGTTAACATC--GATCATCCTTAGGAATTACCA-TTTAAAC  1136