BAC Information

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BAC

Clone NameB6Ng01-156L12
Chromosome9 (Build37)
Map Location 72,389,433 - 72,507,961
singlet/doubletdoublet
Overlap geneRfxdc2
Upstream geneAA407270, LOC547043, LOC100040537, Cgnl1, Tcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik
Downstream geneNedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081, Unc13c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156L12.bB6Ng01-156L12.g
ACCDH951150DH951151
length1,1101,145
definitionDH951150|Mus musculus domesticus DNA, BAC clone: B6Ng01-156L12, 5' end.DH951151|Mus musculus domesticus DNA, BAC clone: B6Ng01-156L12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,506,864 - 72,507,961)(72,389,433 - 72,390,602)
sequence
gaattctagggattgaacatagtacctcatgatgctccctttcacgtagc
cacatgttcttctgaagaacagagccgataataataatacatgtgataat
tggtgatggtaatttttttttttggtaatttttaagaatagtgatggagg
tattccagacctcgagttggttcagatttttaactcagatcattcttttt
ttattctcttataagtatgttgaaataagtccttgaaaagccatggaagg
ctccagccaccttatctgcttaagaagcaaactgaagctcactggaacct
ggcggatcaaacctcagcttacccaatcagatactcaagggatctccgca
gagttacttttcacataattccaatcagtagccacagggaggaagacaag
gtttcacactgtccactgcatcaacctgaggtctgcagagacctgtcttg
gggcaaaactagatccttggccacagataagaatttcaggactaacctgt
gtgaagcagagttggagtttattaaaactagaaacaagaagccagggagc
ggtagctcacacccacttgatcccagtacttgggaggcagagacaggcag
atctcttacgagttcaaggccagcctggtctacaaatcgagttccaggaa
agccaaggctacacagagaaaccctgtcttgggagagaaagaaataaaga
agagagaataaagcatagaggagagcgtgggtatgggcttctcaaagaaa
agcacggcttaagtgtataagctgtatgcatatcattctggtggtctcag
gtacatctcaaagggttgctaagaagcccttttttctctcttcttgttaa
gtaaacattctagggggggctccagaggttccctgaaataacagcattca
gtcaggtaagataaaattcaggagccactaggcttgcacaaggaatcggg
acacattttttctactgtactgaagtttctgagaggattcataaataaac
tgcagcttatagcttgggcagtggggaaaagtcctccacgaaaatgctag
ttggtgttggattttctttttgttgcattgttgtgtgtgtgtgttgtgtt
gtgcgtgtgg
gaattccaacctttagaacttcacccacttggattttatatataaaagta
agattttgtttaataaagtaatgatacagtgagtagtagatgaataggga
gtcaaggatattaagtatttttatttgccaagctcagggtaatggcctta
gtttttcttaaaaaaaaaaaaaaaatccagagatagactatagatttaaa
caaactacttattagattcttactgtgacttctttattctctctgtcgtg
aattagatttagagctggtgatgacagtgaaccttaccaataatgtaggt
cagtagaggaagatagtatgggagaaaatatatttgggaaacttattaat
caatatagttcctacatataatggtaatgccaaccatttgtaaccctctt
acctaagtttttatttacataggtagcagaaaagtataacataataacag
agaagaaaaggatgggtatggatgagcactaggcaaagtacaagttgttg
ctttaaacaacattttatttttgtttctagatgtatttattttatctgta
tgaatgctttgcctgcatgtatgaatgaaaccatgtgcatacacgcctgg
tgcccatgaaggtgaaaagagggtgtaagagccccagggactagaattat
agatagttgcaagccaccaaataggtgcttggaatggaatctaggttttc
tacaagagcaataagtgccatctctccagccctaaaagcttaacagcagt
ctttcctctgtgccttggtatcttatggcctcaatttgcccttgttttct
gtttatctacttcttttgatagtgtataccactatatcttttttttcatt
agtctagcaaattgggttttaattatttttcttggccatgcctgtgtcca
tattaccatttaactaactgactaatttgtagtgtaacttaaatttcttc
ttttttttctatttccactgccaaaacatagtttagtgcttcacttctat
aactgtattattaagatagtaatagaattatttgtattatttgagcccaa
aattcttctcttgatcctgtgtaatgtcagtccacacagactggggttct
gttgagtgggacttttagaaaatggcttgactcctagaggtggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_72506864_72507961
seq2: B6Ng01-156L12.b_47_1155 (reverse)

seq1  CACACACAC-ACAC-ACACACACACACACACATGC-ACAAAA--GACATC  45
      ||||| ||| |||| |||||||||||||   |||| ||||||   | |||
seq2  CACACGCACAACACAACACACACACACAACAATGCAACAAAAAGAAAATC  50

seq1  CAACA-CAACTAGCATTTTCGT-GAGGACTTTT-CCCACTGCCC-AGCTA  91
      ||||| |||||||||||||||| |||||||||| |||||||||| |||||
seq2  CAACACCAACTAGCATTTTCGTGGAGGACTTTTCCCCACTGCCCAAGCTA  100

seq1  TAAGCCTGCAGTTTA-TTATGATTCCTCTCAGAAACCTCAGTTACAGTAG  140
      |||| |||||||||| |||||| ||||||||||||| |||| ||||||||
seq2  TAAG-CTGCAGTTTATTTATGAATCCTCTCAGAAACTTCAG-TACAGTAG  148

seq1  -AAGAATGTGTCCCGACTCCTTGTGCAAGCCTAGTGGCTCCTG-ATTTTA  188
       || |||||||||||| |||||||||||||||||||||||||| ||||||
seq2  AAAAAATGTGTCCCGATTCCTTGTGCAAGCCTAGTGGCTCCTGAATTTTA  198

seq1  TCTTACCTGACTGTAATGCTG-TAATTCAGGGAACCTCTGGAG-CCACCC  236
      ||||||||||||| ||||||| || |||||||||||||||||| || |||
seq2  TCTTACCTGACTG-AATGCTGTTATTTCAGGGAACCTCTGGAGCCCCCCC  247

seq1  TAGAATG-TTACTTAACAAGAAGAGAGAAAAAAGGGCTTCTTAGCAACCC  285
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGTTTACTTAACAAGAAGAGAGAAAAAAGGGCTTCTTAGCAACCC  297

seq1  TTTGAGATGTAACCTGAGACCACCAGAATGATATGCATACAGCTTATACA  335
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATGT-ACCTGAGACCACCAGAATGATATGCATACAGCTTATACA  346

seq1  CTTAAGCCGTGCTTTTCTTTGAGAAGCCCATACCCACGCTCTCCTCTATG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCCGTGCTTTTCTTTGAGAAGCCCATACCCACGCTCTCCTCTATG  396

seq1  CTTTATTCTCTCTTCTTTATTTCTTTCTCTCCCAAGACAGGGTTTCTCTG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTCTCTCTTCTTTATTTCTTTCTCTCCCAAGACAGGGTTTCTCTG  446

seq1  TGTAGCCTTGGCTTTCCTGGAACTCGATTTGTAGACCAGGCTGGCCTTGA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCTTGGCTTTCCTGGAACTCGATTTGTAGACCAGGCTGGCCTTGA  496

seq1  ACTCGTAAGAGATCTGCCTGTCTCTGCCTCCCAAGTACTGGGATCAAGTG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGTAAGAGATCTGCCTGTCTCTGCCTCCCAAGTACTGGGATCAAGTG  546

seq1  GGTGTGAGCTACCGCTCCCTGGCTTCTTGTTTCTAGTTTTAATAAACTCC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGAGCTACCGCTCCCTGGCTTCTTGTTTCTAGTTTTAATAAACTCC  596

seq1  AACTCTGCTTCACACAGGTTAGTCCTGAAATTCTTATCTGTGGCCAAGGA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGCTTCACACAGGTTAGTCCTGAAATTCTTATCTGTGGCCAAGGA  646

seq1  TCTAGTTTTGCCCCAAGACAGGTCTCTGCAGACCTCAGGTTGATGCAGTG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTTTGCCCCAAGACAGGTCTCTGCAGACCTCAGGTTGATGCAGTG  696

seq1  GACAGTGTGAAACCTTGTCTTCCTCCCTGTGGCTACTGATTGGAATTATG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGTGAAACCTTGTCTTCCTCCCTGTGGCTACTGATTGGAATTATG  746

seq1  TGAAAAGTAACTCTGCGGAGATCCCTTGAGTATCTGATTGGGTAAGCTGA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTAACTCTGCGGAGATCCCTTGAGTATCTGATTGGGTAAGCTGA  796

seq1  GGTTTGATCCGCCAGGTTCCAGTGAGCTTCAGTTTGCTTCTTAAGCAGAT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGATCCGCCAGGTTCCAGTGAGCTTCAGTTTGCTTCTTAAGCAGAT  846

seq1  AAGGTGGCTGGAGCCTTCCATGGCTTTTCAAGGACTTATTTCAACATACT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGCTGGAGCCTTCCATGGCTTTTCAAGGACTTATTTCAACATACT  896

seq1  TATAAGAGAATAAAAAAAGAATGATCTGAGTTAAAAATCTGAACCAACTC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAGAATAAAAAAAGAATGATCTGAGTTAAAAATCTGAACCAACTC  946

seq1  GAGGTCTGGAATACCTCCATCACTATTCTTAAAAATTACCAAAAAAAAAA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTGGAATACCTCCATCACTATTCTTAAAAATTACCAAAAAAAAAA  996

seq1  ATTACCATCACCAATTATCACATGTATTATTATTATCGGCTCTGTTCTTC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCATCACCAATTATCACATGTATTATTATTATCGGCTCTGTTCTTC  1046

seq1  AGAAGAACATGTGGCTACGTGAAAGGGAGCATCATGAGGTACTATGTTCA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAACATGTGGCTACGTGAAAGGGAGCATCATGAGGTACTATGTTCA  1096

seq1  ATCCCTAGAATTC  1098
      |||||||||||||
seq2  ATCCCTAGAATTC  1109

seq1: chr9_72389433_72390602
seq2: B6Ng01-156L12.g_66_1210

seq1  GAATTCCAACCTTTAGAACTTCACCCACTTGGATTTTATATATAAAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACCTTTAGAACTTCACCCACTTGGATTTTATATATAAAAGTA  50

seq1  AGATTTTGTTTAATAAAGTAATGATACAGTGAGTAGTAGATGAATAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGTTTAATAAAGTAATGATACAGTGAGTAGTAGATGAATAGGGA  100

seq1  GTCAAGGATATTAAGTATTTTTATTTGCCAAGCTCAGGGTAATGGCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGATATTAAGTATTTTTATTTGCCAAGCTCAGGGTAATGGCCTTA  150

seq1  GTTTTTCTTAAAAAAAAAAAAAAAATCCAGAGATAGACTATAGATTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTTAAAAAAAAAAAAAAAATCCAGAGATAGACTATAGATTTAAA  200

seq1  CAAACTACTTATTAGATTCTTACTGTGACTTCTTTATTCTCTCTGTCGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTACTTATTAGATTCTTACTGTGACTTCTTTATTCTCTCTGTCGTG  250

seq1  AATTAGATTTAGAGCTGGTGATGACAGTGAACCTTACCAATAATGTAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGATTTAGAGCTGGTGATGACAGTGAACCTTACCAATAATGTAGGT  300

seq1  CAGTAGAGGAAGATAGTATGGGAGAAAATATATTTGGGAAACTTATTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAGGAAGATAGTATGGGAGAAAATATATTTGGGAAACTTATTAAT  350

seq1  CAATATAGTTCCTACATATAATGGTAATGCCAACCATTTGTAACCCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATAGTTCCTACATATAATGGTAATGCCAACCATTTGTAACCCTCTT  400

seq1  ACCTAAGTTTTTATTTACATAGGTAGCAGAAAAGTATAACATAATAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGTTTTTATTTACATAGGTAGCAGAAAAGTATAACATAATAACAG  450

seq1  AGAAGAAAAGGATGGGTATGGATGAGCACTAGGCAAAGTACAAGTTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAAGGATGGGTATGGATGAGCACTAGGCAAAGTACAAGTTGTTG  500

seq1  CTTTAAACAACATTTTATTTTTGTTTCTAGATGTATTTATTTTATCTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAACAACATTTTATTTTTGTTTCTAGATGTATTTATTTTATCTGTA  550

seq1  TGAATGCTTTGCCTGCATGTATGAATGAAACCATGTGCATACACGCCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCTTTGCCTGCATGTATGAATGAAACCATGTGCATACACGCCTGG  600

seq1  TGCCCATGAAGGTGAAAAGAGGGTGTAAGAGCCCCAGGGACTAGAATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATGAAGGTGAAAAGAGGGTGTAAGAGCCCCAGGGACTAGAATTAT  650

seq1  AGATAGTTGCAAGCCACCAAATAGGTGCTTGGAATGGAATCTAGGTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTTGCAAGCCACCAAATAGGTGCTTGGAATGGAATCTAGGTTTTC  700

seq1  TACAAGAGCAATAAGTGCCATCTCTCCAGCCCTAAAAGCTTAACAGCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAGCAATAAGTGCCATCTCTCCAGCCCTAAAAGCTTAACAGCAGT  750

seq1  CTTTCCTCTGTGCCTTGGTATCTTATGGCCTCAATTTGCCCTTGTTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCTGTGCCTTGGTATCTTATGGCCTCAATTTGCCCTTGTTTTCT  800

seq1  GTTTATCTACTTCTTTTGATAGTGTATACCACTATATCTTTTTTTTCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTTTATCTACTTCTTTTGATAGTGTATACCACTATATCTTTTTTTTC-AT  849

seq1  TAGTCTAGCAAATTGGTTTTTAATTATTTTTCTTGGCCATGCCTGTGTCC  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAGTCTAGCAAATTGGGTTTTAATTATTTTTCTTGGCCATGCCTGTGTCC  899

seq1  AATATTTACCATTTAACTAACTGACTAATTTGTAGTGTAACTTAAATTTC  950
       ||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  -ATA-TTACCATTTAACTAACTGACTAATTTGTAGTGTAACTTAAATTTC  947

seq1  TTCCTTTTTTTTCTATTTCCACTGCCAAAACCATAGTTTAGTGCTTCAAC  1000
      || ||||||||||||||||||||||||||| |||||||||||||||||  
seq2  TT-CTTTTTTTTCTATTTCCACTGCCAAAA-CATAGTTTAGTGCTTCA--  993

seq1  CTCCTATAACTGTATTATTAAGAATAGTAATAGATATTATTTGTAATTAT  1050
      || ||||||||||||||||||| ||||||||||| ||||||||| |||||
seq2  CTTCTATAACTGTATTATTAAG-ATAGTAATAGA-ATTATTTGT-ATTAT  1040

seq1  TTGAGCCCAAAATATCTCTCTTGGACTCCTGTGTAGATGTCAAGTTCACA  1100
      |||||||||||||   |||||||   ||||||||| ||||| ||| ||||
seq2  TTGAGCCCAAAATTCTTCTCTTG--ATCCTGTGTA-ATGTC-AGTCCACA  1086

seq1  CACAGCTGGTGGTTCTGTTTGGAGGTTGTGGAACTTTTAGGAAATAGGGC  1150
      || | |||| |||||||||  ||    |||| |||||||| ||||  |||
seq2  CAGA-CTGG-GGTTCTGTT--GA----GTGGGACTTTTAGAAAAT--GGC  1126

seq1  TTGACTCCCAGAGGTTGGTC  1170
      |||||||| ||||| |||||
seq2  TTGACTCCTAGAGG-TGGTC  1145