BAC Information

Click to search

BAC

Clone NameB6Ng01-156N03
Chromosome9 (Build37)
Map Location 40,803,943 - 40,917,040
singlet/doubletdoublet
Overlap geneCrtam, 2810457I06Rik
Upstream geneOlfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik
Downstream geneLOC628495, LOC100042464, EG667566, 6720432D03Rik, Sorl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156N03.bB6Ng01-156N03.g
ACCDH951224DH951225
length1,0121,075
definitionDH951224|Mus musculus domesticus DNA, BAC clone: B6Ng01-156N03, 5' end.DH951225|Mus musculus domesticus DNA, BAC clone: B6Ng01-156N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,916,003 - 40,917,040)(40,803,943 - 40,805,030)
sequence
gaattcatattcgttctgcctttgatgccttcttgatgacatgccctgtc
acagatacttcaaggacaagacttgtggaagtaaagaatccaaagctagg
aaaaatgccagggttcctgttgtccatctctatgtatgtccagctgagtt
ttccatgcaatacccatctcagacaaaagaccacctagacagggaaccca
cagcttcctcttggtttggagccaagttggaagtcgtcatgccagctttc
cccctgctttgctgtgcactgtcaaataatttggggcatggcagggggtg
tggaaatgaggagtgatttacagcatctgctccttcctttctagttgaat
ctgttgttctcagataccagcagcgagtgccaaagtcagcaatggaattc
agctgtgcgcgtttggaaggcgctaggagataaatttatgttcactattc
ggatgtggagtgtacagggaaaacagatggccacattgtcctccaagtgc
cccagagggtggtggctgatgagtaacttcggggtgaggagctggggagt
cagttcattcccgctctgaaagggtagctagatagatacgcgcccggggg
ctgtgtgctctttcctccgaggagaaggaaggcacatgagagggatcccc
tggctctctctgatgttctcttccatcctgtcccacagggatggacaggt
ttgcaccatgaggtcctagttgggcaattgtgtttccgtactttctgcat
ccttgttgaacacaaggaggacactaacggtggtgagagactcttctgcc
ttaaacagtatcctgaactggacatcgtcactattgaagccagtggaaga
ctcatgggcgttccacaagcctcctgacccaaccccaacaactttgacta
acccacgagtatgtctttcagaacacgtagttcacttgggatttgcccaa
gtgacgacagtgttattctggactctgagcttaatcaaaagtggttagcc
tgctagtaaatc
gaattcccaaatgctgaagattcacttcgtagagcctatgtttttgcatc
tagccctagcctttaatttccatgtaggttgtagcaataacaactcagaa
atttttatgttgcattcacactgactttcatggggaaacagtttgtttta
gttctaatcgacaaacatctgtgccatcagccaatgtggacaaataaccc
tgagtcactggtgaggctggagagatagatggcttgacacgtaatcatgg
aaatctgaacttggaccgcagcacccacgggaaatatacaagtgcagagt
actcatctccaatctcagtgctgtggaggtggagacaggaggaccctgga
gctttctggccagccagtctagcagaatagatgagctccaggttcaaaga
aagaccctgtctaaaacaaaacaaaacacggtagagaccaatgtcgaata
cacttaatgttcacctctggcttgcacacacatgtacacacccccataca
catatgtgtacacatatacttaaatatgtgtatacacatacacagagaga
gagagagacaaagacagacagagacagagacagacagacagagatagact
gagagagattgattggttgatgagtggagctgaaacacagttccagaggt
agaatacaggtctagcatgccacagaccttggcttcaattactaaccaag
tcactaagtaatcaaaacacctgtgttttcaaaaacaggcgatgaggtct
cttgccagaattctgcttgggtttcctcctggaaaataatctcctgccca
tgaattaaatagagtcaggagactcttacaatgtcttttagattgtgact
aactgtactgtggcttttagcacagcgaaagcagtttttccgccctaaag
ttagtaatagtcgttcttgctgctgagatatatatgtggctactggtcag
agtgacctcgtctactggtgcacagatacatacgtgatgaagcgcaagct
gagctgtcccaccactcctgctctgagctttccgtcttatcaggactcca
tgtttgatctgcctgcacagaaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_40916003_40917040
seq2: B6Ng01-156N03.b_46_1057 (reverse)

seq1  GATTTACTTAGCAGGGCTAACCAGCTTTCTGAGTCTCAGCTCAGAAGTGC  50
      ||||||| ||||| ||||||||| |||| |||   | ||||||| ||| |
seq2  GATTTAC-TAGCA-GGCTAACCA-CTTT-TGA--TTAAGCTCAG-AGTCC  43

seq1  AGGAGTACCACTGTTCCTTCACCCTGGGGGAAAATCCCCACTGTGGAAAC  100
      | || || ||||||  | ||||     ||| ||||||| | ||     | 
seq2  A-GAATAACACTGT--CGTCAC---TTGGGCAAATCCCAAGTG-----AA  82

seq1  CTACCTGCTTCTAGAAAGACATACTCGGTGGGCTAGTCAATGTTTGTTTG  150
      |||| || |||| ||||||||||||| ||||| ||||||| | |||||  
seq2  CTACGTG-TTCT-GAAAGACATACTC-GTGGGTTAGTCAAAG-TTGTT--  126

seq1  GGGTTTGGGTCAGGAGGTGTGTGGGACGCCTACTGAGTCTTCCCCTGGCT  200
      ||| |||||||||||||  ||||| ||||| | |||||||||| ||||||
seq2  GGGGTTGGGTCAGGAGGCTTGTGGAACGCCCA-TGAGTCTTCCACTGGCT  175

seq1  TCAATAGTGAGGTTCTTCAGTTCAGGATACTGTTCTAAGGCAGAAGAGTC  250
      |||||||||| | | | ||||||||||||||||| |||||||||||||||
seq2  TCAATAGTGACGATGTCCAGTTCAGGATACTGTT-TAAGGCAGAAGAGTC  224

seq1  TCTCACCACCCTTAGTGTCCTCCCTGTGTTCAACAATGATGCAGAAAGTA  300
      |||||||||| |||||||||||| |||||||||||| |||||||||||||
seq2  TCTCACCACCGTTAGTGTCCTCCTTGTGTTCAACAAGGATGCAGAAAGTA  274

seq1  AGGAAACACAAATGACCAACTAGGACCTCATGGTGCAAACCTGTCCATCC  350
       |||||||||| || |||||||||||||||||||||||||||||||||||
seq2  CGGAAACACAATTGCCCAACTAGGACCTCATGGTGCAAACCTGTCCATCC  324

seq1  CTCTGGGACAGGATGGAAGAGAACATCAGAGAGAGCCAGGGGATCCCTCT  400
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGACAGGATGGAAGAGAACATCAGAGAGAGCCAGGGGATCCCTCT  374

seq1  CATGTGCCTTCCTTCTCCTCGGAGGAAAGAGCACACAGCCCCCGGGCGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCCTTCCTTCTCCTCGGAGGAAAGAGCACACAGCCCCCGGGCGCG  424

seq1  TATCTATCTAGCTACCCTTTCAGAGCGGGAATGAACTGACTCCCCAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTAGCTACCCTTTCAGAGCGGGAATGAACTGACTCCCCAGCTC  474

seq1  CTCACCCCGAAGTTACTCATCAGCCACCACCCTCTGGGGCACTTGGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCCGAAGTTACTCATCAGCCACCACCCTCTGGGGCACTTGGAGGA  524

seq1  CAATGTGGCCATCTGTTTTCCCTGTACACTCCACATCCGAATAGTGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGGCCATCTGTTTTCCCTGTACACTCCACATCCGAATAGTGAACA  574

seq1  TAAATTTATCTCCTAGCGCCTTCCAAACGCGCACAGCTGAATTCCATTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTATCTCCTAGCGCCTTCCAAACGCGCACAGCTGAATTCCATTGC  624

seq1  TGACTTTGGCACTCGCTGCTGGTATCTGAGAACAACAGATTCAACTAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTGGCACTCGCTGCTGGTATCTGAGAACAACAGATTCAACTAGAA  674

seq1  AGGAAGGAGCAGATGCTGTAAATCACTCCTCATTTCCACACCCCCTGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAGCAGATGCTGTAAATCACTCCTCATTTCCACACCCCCTGCCA  724

seq1  TGCCCCAAATTATTTGACAGTGCACAGCAAAGCAGGGGGAAAGCTGGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAAATTATTTGACAGTGCACAGCAAAGCAGGGGGAAAGCTGGCAT  774

seq1  GACGACTTCCAACTTGGCTCCAAACCAAGAGGAAGCTGTGGGTTCCCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGACTTCCAACTTGGCTCCAAACCAAGAGGAAGCTGTGGGTTCCCTGT  824

seq1  CTAGGTGGTCTTTTGTCTGAGATGGGTATTGCATGGAAAACTCAGCTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGGTCTTTTGTCTGAGATGGGTATTGCATGGAAAACTCAGCTGGA  874

seq1  CATACATAGAGATGGACAACAGGAACCCTGGCATTTTTCCTAGCTTTGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATAGAGATGGACAACAGGAACCCTGGCATTTTTCCTAGCTTTGGA  924

seq1  TTCTTTACTTCCACAAGTCTTGTCCTTGAAGTATCTGTGACAGGGCATGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTACTTCCACAAGTCTTGTCCTTGAAGTATCTGTGACAGGGCATGT  974

seq1  CATCAAGAAGGCATCAAAGGCAGAACGAATATGAATTC  1038
      ||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGAAGGCATCAAAGGCAGAACGAATATGAATTC  1012

seq1: chr9_40803943_40805030
seq2: B6Ng01-156N03.g_68_1142

seq1  GAATTCCCAAATGCTGAAGATTCACTTCGTAGAGCCTATGTTTTTGCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAATGCTGAAGATTCACTTCGTAGAGCCTATGTTTTTGCATC  50

seq1  TAGCCCTAGCCTTTAATTTCCATGTAGGTTGTAGCAATAACAACTCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTAGCCTTTAATTTCCATGTAGGTTGTAGCAATAACAACTCAGAA  100

seq1  ATTTTTATGTTGCATTCACACTGACTTTCATGGGGAAACAGTTTGTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATGTTGCATTCACACTGACTTTCATGGGGAAACAGTTTGTTTTA  150

seq1  GTTCTAATCGACAAACATCTGTGCCATCAGCCAATGTGGACAAATAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAATCGACAAACATCTGTGCCATCAGCCAATGTGGACAAATAACCC  200

seq1  TGAGTCACTGGTGAGGCTGGAGAGATAGATGGCTTGACACGTAATCATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCACTGGTGAGGCTGGAGAGATAGATGGCTTGACACGTAATCATGG  250

seq1  AAATCTGAACTTGGACCGCAGCACCCACGGGAAATATACAAGTGCAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGAACTTGGACCGCAGCACCCACGGGAAATATACAAGTGCAGAGT  300

seq1  ACTCATCTCCAATCTCAGTGCTGTGGAGGTGGAGACAGGAGGACCCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCTCCAATCTCAGTGCTGTGGAGGTGGAGACAGGAGGACCCTGGA  350

seq1  GCTTTCTGGCCAGCCAGTCTAGCAGAATAGATGAGCTCCAGGTTCAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTGGCCAGCCAGTCTAGCAGAATAGATGAGCTCCAGGTTCAAAGA  400

seq1  AAGACCCTGTCTAAAACAAAACAAAACACGGTAGAGACCAATGTCGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCTGTCTAAAACAAAACAAAACACGGTAGAGACCAATGTCGAATA  450

seq1  CACTTAATGTTCACCTCTGGCTTGCACACACATGTACACACCCCCATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAATGTTCACCTCTGGCTTGCACACACATGTACACACCCCCATACA  500

seq1  CATATGTGTACACATATACTTAAATATGTGTATACACATACACAGAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTGTACACATATACTTAAATATGTGTATACACATACACAGAGAGA  550

seq1  GAGAGAGACAAAGACAGACAGAGACAGAGACAGACAGACAGAGATAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGACAAAGACAGACAGAGACAGAGACAGACAGACAGAGATAGACT  600

seq1  GAGAGAGATTGATTGGTTGATGAGTGGAGCTGAAACACAGTTCCAGAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGATTGATTGGTTGATGAGTGGAGCTGAAACACAGTTCCAGAGGT  650

seq1  AGAATACAGGTCTAGCATGCCACAGACCTTGGCTTCAATTACTAACCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACAGGTCTAGCATGCCACAGACCTTGGCTTCAATTACTAACCAAG  700

seq1  TCACTAAGTAATCAAAACACCTGTGTTTTCAAAAACAGGCGATGAGGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAGTAATCAAAACACCTGTGTTTTCAAAAACAGGCGATGAGGTCT  750

seq1  CTTGCCAGAATTCTGCTTGGGTTTCCTCCTGGAAAATAATCTCCTGCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCAGAATTCTGCTTGGGTTTCCTCCTGGAAAATAATCTCCTGCCCA  800

seq1  TGAATTAAATAGAGTCAGGAGACTCTTACAATGTC-TTTAGATTGTGACT  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGAATTAAATAGAGTCAGGAGACTCTTACAATGTCTTTTAGATTGTGACT  850

seq1  AACTGTACTGTGGCTTTTAGCACAGGCGAAAGCAGTTTTTCCGCCCTAAA  899
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AACTGTACTGTGGCTTTTAGCACA-GCGAAAGCAGTTTTTCCGCCCTAAA  899

seq1  GTTAGTAATAGTCGTTCTTGCTGCTGAGAATTTAGTATGTGGCTACTGGT  949
      |||||||||||||||||||||||||||| || || |||||||||||||||
seq2  GTTAGTAATAGTCGTTCTTGCTGCTGAG-ATATA-TATGTGGCTACTGGT  947

seq1  CAGAGTGACCTCGTCTACTGGTGCCACAGATACATACGGTGATTGAAGCG  999
      ||||||||||||||||||||||| ||||||||||||| |||| |||||||
seq2  CAGAGTGACCTCGTCTACTGGTG-CACAGATACATAC-GTGA-TGAAGCG  994

seq1  CAGAGCTTGAGCTGTCCCACCACTCCTTGCTCTGGGCTTTTCCGGTCTTA  1049
      || ||| ||||||||||||||||||| ||||||| |||||  | ||||||
seq2  CA-AGC-TGAGCTGTCCCACCACTCC-TGCTCTGAGCTTT--CCGTCTTA  1039

seq1  TCAGGGCTCCATGTTTGATTCTGCCTGCAGCAGGAAACT  1088
      ||||| |||||||||||| |||||||||| || ||||||
seq2  TCAGGACTCCATGTTTGA-TCTGCCTGCA-CA-GAAACT  1075