BAC Information

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BAC

Clone NameB6Ng01-156O02
Chromosome9 (Build37)
Map Location 42,001,269 - 42,146,309
singlet/doubletdoublet
Overlap geneSc5d, Tecta
Upstream geneLOC100042464, EG667566, 6720432D03Rik, Sorl1
Downstream geneTbcel, Grik4, Arhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156O02.bB6Ng01-156O02.g
ACCDH951266DH951267
length6341,123
definitionDH951266|Mus musculus domesticus DNA, BAC clone: B6Ng01-156O02, 5' end.DH951267|Mus musculus domesticus DNA, BAC clone: B6Ng01-156O02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,001,269 - 42,001,901)(42,145,166 - 42,146,309)
sequence
gaattccaggaagcgatgtatgcttttttttttttttttttttttttttt
gtaaagtcagcaagccattgttgagcagaatttctgcagatattgtcaga
gggaacataatctgggtcaatgaatcataaattctattttggtagtttgc
cgaaaacaacattgaagacagagctgtcctgaaggggaaaacttgaaaaa
gacacgaaacgaggcagcaatgcagcaggggaggagagaaggagattctg
cccaacagattgtaggcttcccttccactgtttgcctaggcatcaagcag
gttggtctttctctttctctctgggtcccggggggggggggggacagcat
agcattgaatacaacaaacggcacaatcccacgcaaacaggaacaggaca
cgggcaaaagttccctggggtcttcaaatgactgccactgctcagtttat
caacctgtaaagaatcactttgtccccgagaacaattccacagacattaa
atggcagcagcttggcatgactcccattgtccttgtttgtataggttaca
taaaacagcaaggttatacgtgaacttatctctctttctggttaaatgac
attcgggtgctgctattggtggttggggctggga
gaattcagtggtccacggaatctgccctccatgggtactcaaggttatca
tctgaagggcactgctaatatctgtggcaacacttctttccccaagttgg
tgcagagactggttccatgctgatgtattctagcctctgggtttggtatg
gaacgaagccatttctctataattccgggagatggatttttaaatgctaa
ctgcatacttccgtgtttaatgatttctgacctccccttgatctgcagtc
caatggcactcatatcatgtataaaaacacaatctggattgaaagtgcca
acaacactggcaacatcatcacgagggaccgcacgatcaatgtggaattt
tcatgcgcttatgagctagatatcaagatctccttagactctgtcgtgaa
gcctatgctaaggtaaagactttcaggggctgctctcctgctttctctct
tcttgacagctaaggttagcagcatcagagtagctagcatttgtctttga
agcaccagggaaaatataattcatgtttctggaaacaaaatgctctagac
taaatgaccagaaggcttgctttctgaataatgtgatacagtaactacct
gtgaccaatgagtgcttgaaatttggctcaggggactgataaattgaatt
ttttattttatttaatttcatttaaatgtaaattgccccatgtagggacc
aaattagataaggcagctttaaacttgaggactgcatgccatgtcttccc
tctacactgtagcttgaaaaaaatggcagttaattgaataaataacattg
ggtgtttttttttccgaatttatttatttatttttggttccttgcctcac
atacaatcccttctttgttagtgtcatcaacctgacagttccgacccagg
agggcagcttcaccaccagatggcactctataaaaatgcttcctacaaac
acccttaccgccagggaagtgtgctgacactcggatgtgctgtacgtggg
cgtctttgtggtcggagctgactctaccacttgattctcacactcacaat
gctacgcacccctccgaaaagcacgacaagcttcgtacttcatcatcgag
agggtgatgccatgccaactctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_42001269_42001901
seq2: B6Ng01-156O02.b_45_678

seq1  GAATTCCAGGAAGCGATGTATGCTTTTTTTTTTTTTTTTTTTTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAAGCGATGTATGCTTTTTTTTTTTTTTTTTTTTTTTTTTT  50

seq1  GTAAAGTCAGCAAGCCATTGTTGAGCAGAATTTCTGCAGATATTGTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTCAGCAAGCCATTGTTGAGCAGAATTTCTGCAGATATTGTCAGA  100

seq1  GGGAACATAATCTGGGTCAATGAATCATAAATTCTATTTTGGTAGTTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACATAATCTGGGTCAATGAATCATAAATTCTATTTTGGTAGTTTGC  150

seq1  CGAAGACAACATTGAAGACAGAGCTGTCCTGAAGGGGAAAACTTGAAAAA  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAACAACATTGAAGACAGAGCTGTCCTGAAGGGGAAAACTTGAAAAA  200

seq1  GACACGAAACGAGGCAGCAATGCAGCAGGGGAGGAGAGAAGGAGATTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGAAACGAGGCAGCAATGCAGCAGGGGAGGAGAGAAGGAGATTCTG  250

seq1  CCCAACAGATTGTAGGCTTCCCTTCCACTGTTTGCCTAGGCATCAAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAGATTGTAGGCTTCCCTTCCACTGTTTGCCTAGGCATCAAGCAG  300

seq1  GTTGGTCTTTCTCTTTCTCTCTGGGTCCCGGGGGGGGGGGGGGACAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCTTTCTCTTTCTCTCTGGGTCCCGGGGGGGGGGGGGGACAGCAT  350

seq1  AGCATTGAATACAACAGACGGCACAATCACACGCAAACAGGAACAGGACA  400
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  AGCATTGAATACAACAAACGGCACAATCCCACGCAAACAGGAACAGGACA  400

seq1  CGGGCAAAAGTTCCCTGGGGTCTTCAAATGACTGCCACTGCTCAGTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCAAAAGTTCCCTGGGGTCTTCAAATGACTGCCACTGCTCAGTTTAT  450

seq1  CAACCTGTAAAGAATCACTTTGTCCCCGAGAACAATTCCACAGACATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGTAAAGAATCACTTTGTCCCCGAGAACAATTCCACAGACATTAA  500

seq1  ATGGCAGCAGCTTGGCATGACTCCCATTGTCCTTGTTTGTATAGGTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGCAGCTTGGCATGACTCCCATTGTCCTTGTTTGTATAGGTTACA  550

seq1  GAAAACAGCAAGGTTATACGTGAACTTATCTCTCTTTCTGGTT-AATGAC  599
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAAAACAGCAAGGTTATACGTGAACTTATCTCTCTTTCTGGTTAAATGAC  600

seq1  ATTCGGGTGCTGCTATTGTTGGTGGGGGCTGGGA  633
      |||||||||||||||||| |||| ||||||||||
seq2  ATTCGGGTGCTGCTATTGGTGGTTGGGGCTGGGA  634

seq1: chr9_42145166_42146309
seq2: B6Ng01-156O02.g_67_1189 (reverse)

seq1  GAGAGTTTGCCATGGCCACTCACCCTCCTTCGATGATGAAGTACCGAAGC  50
      ||||| ||| ||||||   ||||||||  |||||||||||||| ||||||
seq2  GAGAG-TTGGCATGGC--ATCACCCTC--TCGATGATGAAGTA-CGAAGC  44

seq1  TTGTCGTTGCTGTCTCGGGAGGGGGTGGCGTAGCATTTGTTGAGTGTGAG  100
      |||||| |||| | || |||||||   ||||||||||   ||||||||||
seq2  TTGTCG-TGCT-TTTC-GGAGGGG--TGCGTAGCATT--GTGAGTGTGAG  87

seq1  AATCAAGTGTGTAGAGTCAGCTCCGACCACAAAGACGCCCACGTACAGCA  150
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGTG-GTAGAGTCAGCTCCGACCACAAAGACGCCCACGTACAGCA  136

seq1  CATCCCGAGTTGTCAGCACAACTTCCCCTTGGCGGTAAGGGTGTTTGTAG  200
      ||| ||||| ||||||||| |||||||  |||||||||||||||||||||
seq2  CAT-CCGAG-TGTCAGCAC-ACTTCCC--TGGCGGTAAGGGTGTTTGTAG  181

seq1  GAAGCATTTTTATAGAGTGCCATCTTGGTGGTGAAGCTGCCCTCCTGGGT  250
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAAGCATTTTTATAGAGTGCCATC-TGGTGGTGAAGCTGCCCTCCTGGGT  230

seq1  CGGAACTGTCAGGTTGATGACACTAACAAAGAAGGGATTGTATGTGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAACTGTCAGGTTGATGACACTAACAAAGAAGGGATTGTATGTGAGGC  280

seq1  AAGGAACCAAAAATAAATAAATAAAATTCGGAAAAAAAAACACCCAATGT  350
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGGAACCAAAAATAAATAAAT-AAATTCGGAAAAAAAAACACCCAATGT  329

seq1  TATTTATTCAATTAACTGCCATTTTTTTCAAGCTACAGTGTAGAGGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTCAATTAACTGCCATTTTTTTCAAGCTACAGTGTAGAGGGAAG  379

seq1  ACATGGCATGCAGTCCTCAAGTTTAAAGCTGCCTTATCTAATTTGGTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCATGCAGTCCTCAAGTTTAAAGCTGCCTTATCTAATTTGGTCCC  429

seq1  TACATGGGGCAATTTACATTTAAATGAAATTAAATAAAATAAAAAATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGGGCAATTTACATTTAAATGAAATTAAATAAAATAAAAAATTCA  479

seq1  ATTTATCAGTCCCCTGAGCCAAATTTCAAGCACTCATTGGTCACAGGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCAGTCCCCTGAGCCAAATTTCAAGCACTCATTGGTCACAGGTAG  529

seq1  TTACTGTATCACATTATTCAGAAAGCAAGCCTTCTGGTCATTTAGTCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTATCACATTATTCAGAAAGCAAGCCTTCTGGTCATTTAGTCTAG  579

seq1  AGCATTTTGTTTCCAGAAACATGAATTATATTTTCCCTGGTGCTTCAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTGTTTCCAGAAACATGAATTATATTTTCCCTGGTGCTTCAAAG  629

seq1  ACAAATGCTAGCTACTCTGATGCTGCTAACCTTAGCTGTCAAGAAGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCTAGCTACTCTGATGCTGCTAACCTTAGCTGTCAAGAAGAGAG  679

seq1  AAAGCAGGAGAGCAGCCCCTGAAAGTCTTTACCTTAGCATAGGCTTCACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGGAGAGCAGCCCCTGAAAGTCTTTACCTTAGCATAGGCTTCACG  729

seq1  ACAGAGTCTAAGGAGATCTTGATATCTAGCTCATAAGCGCATGAAAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTCTAAGGAGATCTTGATATCTAGCTCATAAGCGCATGAAAATTC  779

seq1  CACATTGATCGTGCGGTCCCTCGTGATGATGTTGCCAGTGTTGTTGGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGATCGTGCGGTCCCTCGTGATGATGTTGCCAGTGTTGTTGGCAC  829

seq1  TTTCAATCCAGATTGTGTTTTTATACATGATATGAGTGCCATTGGACTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATCCAGATTGTGTTTTTATACATGATATGAGTGCCATTGGACTGC  879

seq1  AGATCAAGGGGAGGTCAGAAATCATTAAACACGGAAGTATGCAGTTAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAGGGGAGGTCAGAAATCATTAAACACGGAAGTATGCAGTTAGCA  929

seq1  TTTAAAAATCCATCTCCCGGAATTATAGAGAAATGGCTTCGTTCCATACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATCCATCTCCCGGAATTATAGAGAAATGGCTTCGTTCCATACC  979

seq1  AAACCCAGAGGCTAGAATACATCAGCATGGAACCAGTCTCTGCACCAACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAGAGGCTAGAATACATCAGCATGGAACCAGTCTCTGCACCAACT  1029

seq1  TGGGGAAAGAAGTGTTGCCACAGATATTAGCAGTGCCCTTCAGATGATAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAAGAAGTGTTGCCACAGATATTAGCAGTGCCCTTCAGATGATAA  1079

seq1  CCTTGAGTACCCATGGAGGGCAGATTCCGTGGACCACTGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGTACCCATGGAGGGCAGATTCCGTGGACCACTGAATTC  1123