BAC Information

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BAC

Clone NameB6Ng01-157F21
Chromosome9 (Build37)5 (Build37)
Map Location 47,134,736 - 47,135,22653,938,831 - 53,939,308
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042722, EG667890, 2900052N01Rik, D930036J05
Downstream geneCadm1, LOC100043303, D930028F11Rik, 4432416J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157F21.bB6Ng01-157F21.g
ACCDH951621DH951622
length485759
definitionDH951621|Mus musculus domesticus DNA, BAC clone: B6Ng01-157F21, 5' end.DH951622|Mus musculus domesticus DNA, BAC clone: B6Ng01-157F21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(47,134,736 - 47,135,226)(53,938,831 - 53,939,308)
sequence
cattaatcaagttcttcttcattttgttacaagaagagcctgttgtttat
aacccacagttgccctgctttccctcacacacatcgagagctgtctgcca
tcccaggcttgggaaatagactccctggctttctgtcatctttgccagca
ccctcagcactcatagaatgacattaagaccagagaggtgccctaccaga
tcagagggctaactggaggctttaaacaggccaggaccttctatatagct
tcactctcatggtgcctttttgccctctgatctacactagcagctcctaa
acccgaggctccctgggtctgtccctatgtttggagcacagcagaggact
tggggttagcagctccttgcttgccttttctgtcctttgctctgagatgc
tgggagagaacctgaactttaaacagtaaaactgctttctcctctcttgc
ctgctgggtccttgtgggggtgtgtggtggtggtg
gaattctttaaaaggacacaaaatcactgacctcaaagaaacaaaggctg
ataaattaggctacccaaagattaaggatgtctactcaccaaagatataa
ctaagaagaaaggaagagaatcagataatcagagagttaatcagattctg
tgggaatgacagggggctctgttcaacttttgaaagagcgcttacatacc
tataaaagatggatggttcaatttaatagaaattagtgagaaaggtactt
gagaaaagggaaattttcagtggccagtgactatgaaaatgatcagcctt
attagttgtgatagctttaattgttaacgtcacacaatgtagactagact
cacttgataagagagactcattagggttatctgtattgggttggcttgta
ggtatgtctgtggaaagctgtcttagtttagctaattgacaggaatagcc
cactgtgggtggcaccattctcaaattagggggttttgaactggatttaa
aaaaaggaaaggaaaggaaaaggaaaaggaaaagaaaaagaaaaaaaaga
aagaaacctagctggaagcaaagaaatagacatcagaggcgcatttattt
attttcccctcagctcttggtttcagatatagtgtgatcagctgattcga
gctgctgcccagagttcctgtcaataatggactgggacctggaattgtga
gcaaaataaaccactttggtcagagtgttttatcacagcaacagaaatga
aactagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_47134736_47135226
seq2: B6Ng01-157F21.b_47_537 (reverse)

seq1  CACCACCACCACACACCCCCACAAGGACCCAGCAGGCAAGAGAGGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCACCACACACCCCCACAAGGACCCAGCAGGCAAGAGAGGAGAAA  50

seq1  GCAGTTTTACTGTTTAAAGTTCAGGTTCTCTCCCAGCATCTCAGAGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTTACTGTTTAAAGTTCAGGTTCTCTCCCAGCATCTCAGAGCAAA  100

seq1  GGACAGAAAAGGCAAGCAAGGAGCTGCTAACCCCAAGTCCTCTGCTGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAAAAGGCAAGCAAGGAGCTGCTAACCCCAAGTCCTCTGCTGTGC  150

seq1  TCCAAACATAGGGACAGACCCAGGGAGCCTCGGGTTTAGGAGCTGCTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACATAGGGACAGACCCAGGGAGCCTCGGGTTTAGGAGCTGCTAGT  200

seq1  GTAGATCAGAGGGCAAAAAGGCACCATGAGAGTGAAGCTATATAGAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATCAGAGGGCAAAAAGGCACCATGAGAGTGAAGCTATATAGAAGGT  250

seq1  CCTGGCCTGTTTAAAGCCTCCAGTTAGCCCTCTGATCTGGTAGGGCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCTGTTTAAAGCCTCCAGTTAGCCCTCTGATCTGGTAGGGCACCT  300

seq1  CTCTGGTCTTAATGTCATTCTATGAGTGCTGAGGGTGCTGGCAAAGATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTCTTAATGTCATTCTATGAGTGCTGAGGGTGCTGGCAAAGATGA  350

seq1  CAGAAAGCCAGGGAGTCTATTTCCCAAGCCTGGGATGGCAGACAGCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCCAGGGAGTCTATTTCCCAAGCCTGGGATGGCAGACAGCTCTC  400

seq1  GATGTGTGTGAGGGAAAGCAGGGCAACTGTGGGTTATAAACAACAGGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTGTGAGGGAAAGCAGGGCAACTGTGGGTTATAAACAACAGGCTC  450

seq1  TTCTTGTAACAAAATGAAGAAGAACTTGATTAATGGAATTC  491
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTAACAAAATGAAGAAGAACTTGATTAATGGAATTC  491

seq1: chr5_53938831_53939308
seq2: B6Ng01-157F21.g_517_826 (reverse)

seq1  GTTCTAGTTTCATATCTGTTGCTGTGATAAAATGTCCTAAAAAGCTGGGT  50
      ||||||||||||| ||||||||||||||||||    || |  |       
seq2  GTTCTAGTTTCATTTCTGTTGCTGTGATAAAACACTCTGACCA-------  43

seq1  GGCAGTGGCACATGTCTTTGATCTCAACACTCAGGAAAAAGAGGCAGGTG  100
         |||||   ||   |||| || |||  |              |||   
seq2  --AAGTGGTTTAT---TTTGCTCACAATTC--------------CAG---  71

seq1  GATCTCTGTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGTGCTTCAGGAC  150
                 || | || |||   |  |  ||||   |  | || || |
seq2  -----------GTCCCAGTCCA---TTATTGACAG---GAAC-TCTGGGC  103

seq1  AGCCAAAACTAAAAAATGAACAAACAAAAACAAACAAACAAACAAACAAA  200
      |||   | ||                             || ||    | 
seq2  AGC---AGCT---------------------------CGAATCAGCTGAT  123

seq1  CAAACAAAAACTATTTTGAAAACAAAACCAATCAAACAAAAAAAAATTTA  250
      || || | |     | ||||| ||| | |  | |    |||| ||||   
seq2  CACACTATA-----TCTGAAACCAAGAGC--TGAGGGGAAAATAAAT---  163

seq1  TCCTAGCAAAAGC-CAACTTAGGGGGAAAGGGTTTAGTT-TTAGCTCACA  298
             ||| || |  || |          || || || || ||     
seq2  -------AAATGCGCCTCTGA---------TGTCTATTTCTTTGC-----  192

seq1  ATTTTCAGTTACAGCTGATCATTGCAAAGACTTTAAGGTGGAAGAACTTA  348
        || ||| |  || |  || ||       ||||    |       ||| 
seq2  --TTCCAGCT--AGGT-TTCTTT-------CTTTTTTTT-------CTT-  222

seq1  AACCAGCTAGCTATAGAATGGCACAGTCAAGGGCAGAGAGAAAGGGCATG  398
             |  || |                                | | 
seq2  -------TTTCTTT-------------------------------TCCTT  234

seq1  TTCACTTGTGCTGAGATTGACTTCTTT--ACTCC--TTCATGATCTCGGA  444
      ||| ||| | ||    ||  ||| |||  | |||  ||||  | | |  |
seq2  TTC-CTTTTCCTTTCCTTTCCTTTTTTTAAATCCAGTTCAAAACCCCCTA  283

seq1  CCTTTGGCCCAGGGAATGGCGCCACCCACAGTGG  478
        ||       | |||||| ||||||||||||||
seq2  ATTT-------GAGAATGGTGCCACCCACAGTGG  310