BAC Information

Click to search

BAC

Clone NameB6Ng01-157N11
Chromosome9 (Build37)
Map Location 120,043,038 - 120,195,167
singlet/doubletdoublet
Overlap geneEG546166, Mobp, LOC100039898
Upstream geneDlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62
Downstream geneMyrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1, Ulk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157N11.bB6Ng01-157N11.g
ACCDH951963DH951964
length1,133275
definitionDH951963|Mus musculus domesticus DNA, BAC clone: B6Ng01-157N11, 5' end.DH951964|Mus musculus domesticus DNA, BAC clone: B6Ng01-157N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,194,024 - 120,195,167)(120,043,038 - 120,043,312)
sequence
gaattccagaagattaagacagggagatctccaagttcaaggtcacctgg
gattaaaggcatggtggcacacacctttaatctgggctacaccttctgct
ggagacttacataaggacattggaagaaggaagactctctctctctctcc
ctctctccctctctccttcgcctgattgccgtgtgggactgagcaactgc
tagatccttggacttccattcacagctgctgctgactgttgttgggagtt
ggactgcagactgtaagtcatcaacaaattcctttactatacagagacca
cccataagttctgtgactctagagaaccctgactgatacagtagggcacc
agaaggttacccggctgagttctctgcagcaacaccaatctgcccgtgtg
attcatgagaagtaccgttagatgcatctgttagtgtctgtgtcttcatt
ttaaggtttcccctcacaagcttattggctttctctttccaattttattt
ctactcatataaagcacaggcgtgatttcaaagtggaattcacacaaatc
caggtaaggagcgacgcgcctccacagcaccccacccccattcctgtctc
agtcagtttcatggctgtcggcttggctatggcttagcttgtagcttggt
ttatcctcgtgtttccagagcagctgtacattgagagttttatttcattt
atcttacaaaaggttgtcttcactgtcaacatgactgggcttggaatcac
ctgggagacacggctctgggtgtgtctgtgagagtgttccagagatgatt
aacggagaaggggatgcccgtcctgaatgtgagcagcactgtcccacatc
tctggggtcctaaagagaacagtatggaaaaataattgtccatctccccc
tcggctgctctctgccctgcgctgatgtgaggagtctcagtgccatgttc
ctgccaccgtaaacacgcccacactttccaccctgctggactgtctaaac
agtggtcaaatgaattctttctttagcaacttgctttttaaaaaagaatt
atttattgcattgagctcctggaggtccggacagggtttgatcctctaga
ttgggacttgggtggcttgacgccatgtggtgc
tgagcgttttctctgtagaaaacatgccaggagctgcactgccggcaaaa
ttcttgtaaagttgaccatctatctcattaattcctgaactcagatgtgg
gagggcctcttcccatcgacttaattttgcagcaacatttcaggtatagg
ccctggggtgtgggggtcagagagaagggtggtcctcaggcctgccgtcc
tccaggctctcacggtggtcttagtccaggacctggagcagtgcctgtgg
aggggaaggagaagggtgagggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_120194024_120195167
seq2: B6Ng01-157N11.b_48_1180 (reverse)

seq1  GCACCAACATGGCGGCTCACAACCACCCATAGTCCCAATTCTAGGAGATC  50
      ||||| ||||||||  ||| | ||||||| |||||||| |||||  ||||
seq2  GCACC-ACATGGCG--TCA-AGCCACCCA-AGTCCCAA-TCTAGAGGATC  44

seq1  TAACCCCCTCGTCTGACCTCCATGAACTCATATGC-ATAAATAAATCTTT  99
       |||||  ||  | |||||||| || |||| |||| |||||||| ||  |
seq2  AAACCCTGTC--CGGACCTCCAGGAGCTCA-ATGCAATAAATAATTC--T  89

seq1  TTTTTAAAAAGCAAGTTGCTAAAGAAAG-ATTCATTTTGACCCACTGTTT  148
      |||||||||||||||||||||||||||| ||||| ||||| |||||||||
seq2  TTTTTAAAAAGCAAGTTGCTAAAGAAAGAATTCA-TTTGA-CCACTGTTT  137

seq1  AGACAGTCCAGCAGGGTGGGAAGGTGTGGGCGTGTTTACGGTGGCAGGAA  198
      ||||||||||||||||| |||| |||||||||||||||||||||||||||
seq2  AGACAGTCCAGCAGGGT-GGAAAGTGTGGGCGTGTTTACGGTGGCAGGAA  186

seq1  CATGGCACTGAGACTCCTCACATCAGCGCAGGGCAGAGAGCAGCCGAGGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCACTGAGACTCCTCACATCAGCGCAGGGCAGAGAGCAGCCGAGGG  236

seq1  GGAGATGGACAATTATTTTTCCATACTGTTCTCTTTAGGACCCCAG-GAT  297
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGAGATGGACAATTATTTTTCCATACTGTTCTCTTTAGGACCCCAGAGAT  286

seq1  GTGGGACAGTGCTGCTCACATTCAGGACGGGCATCCCCTTCTCCGTTAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACAGTGCTGCTCACATTCAGGACGGGCATCCCCTTCTCCGTTAAT  336

seq1  CATCTCTGGAACACTCTCACAGACACACCCAGAGCCGTGTCTCCCAGGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTGGAACACTCTCACAGACACACCCAGAGCCGTGTCTCCCAGGTG  386

seq1  ATTCCAAGCCCAGTCATGTTGACAGTGAAGACAACCTTTTGTAAGATAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAGCCCAGTCATGTTGACAGTGAAGACAACCTTTTGTAAGATAAA  436

seq1  TGAAATAAAACTCTCAATGTACAGCTGCTCTGGAAACACGAGGATAAACC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAAAACTCTCAATGTACAGCTGCTCTGGAAACACGAGGATAAACC  486

seq1  AAGCTACAAGCTAAGCCATAGCCAAGCCGACAGCCATGAAACTGACTGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACAAGCTAAGCCATAGCCAAGCCGACAGCCATGAAACTGACTGAG  536

seq1  ACAGGAATGGGGGTGGGGTGCTGTGGAGGCGCGTCGCTCCTTACCTGGAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATGGGGGTGGGGTGCTGTGGAGGCGCGTCGCTCCTTACCTGGAT  586

seq1  TTGTGTGAATTCCACTTTGAAATCACGCCTGTGCTTTATATGAGTAGAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGAATTCCACTTTGAAATCACGCCTGTGCTTTATATGAGTAGAAA  636

seq1  TAAAATTGGAAAGAGAAAGCCAATAAGCTTGTGAGGGGAAACCTTAAAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTGGAAAGAGAAAGCCAATAAGCTTGTGAGGGGAAACCTTAAAAT  686

seq1  GAAGACACAGACACTAACAGATGCATCTAACGGTACTTCTCATGAATCAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACACAGACACTAACAGATGCATCTAACGGTACTTCTCATGAATCAC  736

seq1  ACGGGCAGATTGGTGTTGCTGCAGAGAACTCAGCCGGGTAACCTTCTGGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCAGATTGGTGTTGCTGCAGAGAACTCAGCCGGGTAACCTTCTGGT  786

seq1  GCCCTACTGTATCAGTCAGGGTTCTCTAGAGTCACAGAACTTATGGGTGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTACTGTATCAGTCAGGGTTCTCTAGAGTCACAGAACTTATGGGTGG  836

seq1  TCTCTGTATAGTAAAGGAATTTGTTGATGACTTACAGTCTGCAGTCCAAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTATAGTAAAGGAATTTGTTGATGACTTACAGTCTGCAGTCCAAC  886

seq1  TCCCAACAACAGTCAGCAGCAGCTGTGAATGGAAGTCCAAGGATCTAGCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACAACAGTCAGCAGCAGCTGTGAATGGAAGTCCAAGGATCTAGCA  936

seq1  GTTGCTCAGTCCCACACGGCAATCAGGCGAAGGAGAGAGGGAGAGAGGGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCAGTCCCACACGGCAATCAGGCGAAGGAGAGAGGGAGAGAGGGA  986

seq1  GAGAGAGAGAGAGTCTTCCTTCTTCCAATGTCCTTATGTAAGTCTCCAGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGTCTTCCTTCTTCCAATGTCCTTATGTAAGTCTCCAGC  1036

seq1  AGAAGGTGTAGCCCAGATTAAAGGTGTGTGCCACCATGCCTTTAATCCCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTGTAGCCCAGATTAAAGGTGTGTGCCACCATGCCTTTAATCCCA  1086

seq1  GGTGACCTTGAACTTGGAGATCTCCCTGTCTTAATCTTCTGGAATTC  1144
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCTTGAACTTGGAGATCTCCCTGTCTTAATCTTCTGGAATTC  1133

seq1: chr9_120043038_120043312
seq2: B6Ng01-157N11.g_75_349

seq1  TGAGCGTTTTCTCTGTAGAAAACATGCCAGGAGCTGCACTGCCGGCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGTTTTCTCTGTAGAAAACATGCCAGGAGCTGCACTGCCGGCAAAA  50

seq1  TTCTTGTAAAGTTGACCATCTATCTCATTAATTCCTGAACTCAGATGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTAAAGTTGACCATCTATCTCATTAATTCCTGAACTCAGATGTGG  100

seq1  GAGGGCCTCTTCCCATCGACTTAATTTTGCAGCAACATTTCAGGTATAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCCTCTTCCCATCGACTTAATTTTGCAGCAACATTTCAGGTATAGG  150

seq1  CCCTGGGGTGTGGGGGTCAGAGAGAAGGGTGGTCCTCAGGCCTGCCGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGGTGTGGGGGTCAGAGAGAAGGGTGGTCCTCAGGCCTGCCGTCC  200

seq1  TCCAGGCTCTCACGGTGGTCTTAGTCCAGGACCTGGAGCAGTGCCTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTCTCACGGTGGTCTTAGTCCAGGACCTGGAGCAGTGCCTGTGG  250

seq1  AGGGGAAGGAGAAGGGTGAGGGTGG  275
      |||||||||||||||||||||||||
seq2  AGGGGAAGGAGAAGGGTGAGGGTGG  275