BAC Information

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BAC

Clone NameB6Ng01-158A09
Chromosome9 (Build37)
Map Location 119,346,287 - 119,486,326
singlet/doubletdoublet
Overlap geneEndogl1, Scn5a
Upstream geneEomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b
Downstream geneScn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158A09.bB6Ng01-158A09.g
ACCDH952095DH952096
length1,145468
definitionDH952095|Mus musculus domesticus DNA, BAC clone: B6Ng01-158A09, 5' end.DH952096|Mus musculus domesticus DNA, BAC clone: B6Ng01-158A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,346,287 - 119,347,445)(119,485,853 - 119,486,326)
sequence
gaattcctgccgttgttcttaggacatggttcattagatgaatccctgaa
tctgaggagctctcaggtcgctcagcttggtctctggcatcagctgttgc
atctttttgggcttttggagacacagctttggacgtgatcaagcctggtc
cacatctcaggcaggacttgtagaggacagctttcctaaaagtgtgggaa
accgccaggaagggatggtgtcccaggaatcctttcctctcagaacctgg
agacatggctttttcttcatccctggctgtctgtaaaggctaaattgaga
agtgctcagcagctggcttgtccagcgcagtgatgaggttaaacctcagc
taacatcatgttatataagtaggcccagtaactcagctgatgggtttctt
agaatctagatgctaaacgctccatgcattcaagattaaatgcctagttc
ttcttcacacacagttctgggtagttgactcgtagccagcagccctcctg
tggatgtaccccagacctttagaaagatgttgaggaaagtgctttttgcg
ataccaatttagttttataggaaaaagaaactgaaggtcaaaacactccc
ttggaaatcaactagttggttcaaccacgttaaagaagaaaggaagaagg
aaagagagtttaagaggcgcgtgaactatcgtatcaataagtatgcccaa
gttcttttgtgggatccttgggatagtgctatttggacctatctgtgatt
aatgactgtgaaccactgttgggctgaccgtttgcagtgagatcaggaat
gcctgcgtctgctggcactaaaccaagctgtagcattttcatgctggcat
cttccaggtgtgaaggaagcaagactttgccctcctggtgctccgtggag
ctccttagtgcccagaccagcgccatttccctcatccacggcagctcggc
catgatttccccagattaaagtcctgttcctcatgccgtgaggggtagtg
ggctctgcgctgacccttgctcttcagccggtgtctacactgctagctga
gtagtgtggggcagccttatggggtgcgtgtggtaatcgattcaacgggt
gtttctgaaccttgcgagaacgtactgcatcggttgtagactttg
cagggttgactcacttggcatgaagagcaagcatggaagaacagtgggaa
gtaccagagacagctggggatgggggagtggaggaggctggtgcccaggc
aatccacaaagaagagactcctaggggcaacctgcagcagtgaaaaaacc
acagttcctttcacaggagacgcgttcctgtccttgagaaagcttttgga
agagtgcaatggcagaggtgtctccccagaaacacagaagaggtcgcagt
tttgattaagagagtcaagagtattgttctagccagatatccttccgtct
gggttttgaagcatgaacaggagttttcctggtgaggatagtgtagttca
gtcatcaaccaatcagtacaaaatacagagggataaaccaacagttagtt
gagcgatccattgggtcccatgttgtgaggagaagcggaggccacagtca
cggggggggggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_119346287_119347445
seq2: B6Ng01-158A09.b_47_1191

seq1  GAATTCCTGCCGTTGTTCTTAGGACATGGTTCATTAGATGAATCCCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCGTTGTTCTTAGGACATGGTTCATTAGATGAATCCCTGAA  50

seq1  TCTGAGGAGCTCTCAGGTCGCTCAGCTTGGTCTCTGGCATCAGCTGTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGAGCTCTCAGGTCGCTCAGCTTGGTCTCTGGCATCAGCTGTTGC  100

seq1  ATCTTTTTGGGCTTTTGGAGACACAGCTTTGGACGTGATCAAGCCTGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTGGGCTTTTGGAGACACAGCTTTGGACGTGATCAAGCCTGGTC  150

seq1  CACATCTCAGGCAGGACTTGTAGAGGACAGCTTTCCTAAAAGTGTGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTCAGGCAGGACTTGTAGAGGACAGCTTTCCTAAAAGTGTGGGAA  200

seq1  ACCGCCAGGAAGGGATGGTGTCCCAGGAATCCTTTCCTCTCAGAACCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCCAGGAAGGGATGGTGTCCCAGGAATCCTTTCCTCTCAGAACCTGG  250

seq1  AGACATGGCTTTTTCTTCATCCCTGGCTGTCTGTAAAGGCTAAATTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGGCTTTTTCTTCATCCCTGGCTGTCTGTAAAGGCTAAATTGAGA  300

seq1  AGTGCTCAGCAGCTGGCTTGTCCAGCGCAGTGATGAGGTTAAACCTCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCAGCAGCTGGCTTGTCCAGCGCAGTGATGAGGTTAAACCTCAGC  350

seq1  TAACATCATGTTATATAAGTAGGCCCAGTAACTCAGCTGATGGGTTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCATGTTATATAAGTAGGCCCAGTAACTCAGCTGATGGGTTTCTT  400

seq1  AGAATCTAGATGCTAAACGCTCCATGCATTCAAGATTAAATGCCTAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTAGATGCTAAACGCTCCATGCATTCAAGATTAAATGCCTAGTTC  450

seq1  TTCTTCACACACAGTTCTGGGTAGTTGACTCGTAGCCAGCAGCCCTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCACACACAGTTCTGGGTAGTTGACTCGTAGCCAGCAGCCCTCCTG  500

seq1  TGGATGTACCCCAGACCTTTAGAAAGATGTTGAGGAAAGTGCTTTTTGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTACCCCAGACCTTTAGAAAGATGTTGAGGAAAGTGCTTTTTGCG  550

seq1  ATACCAATTTAGTTTTATAGGAAAAAGAAACTGAAGGTCAAAACACTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAATTTAGTTTTATAGGAAAAAGAAACTGAAGGTCAAAACACTCCC  600

seq1  TTGGAAATCAACTAGTTGGTTCAACCACGTTAAAGAAGAAAGGAAGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATCAACTAGTTGGTTCAACCACGTTAAAGAAGAAAGGAAGAAGG  650

seq1  AAAGAGAGTTTAAGAGGCGCGTGAACTATCGTATCAATAAGTATGCCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGTTTAAGAGGCGCGTGAACTATCGTATCAATAAGTATGCCCAA  700

seq1  GTTCTTTTGTGGGATCCTTGGGATAGTGCTATTTGGACCTATCTGTGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTGTGGGATCCTTGGGATAGTGCTATTTGGACCTATCTGTGATT  750

seq1  AATGACTGTGAACCACTGTTGGGCTGACCGTTTGCAGTGAGATCAGGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTGTGAACCACTGTTGGGCTGACCGTTTGCAGTGAGATCAGGAAT  800

seq1  GCCTGCGTCTGCTGGCACTAAACCAAGCTGTAGCATTTTCATGCTGGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCGTCTGCTGGCACTAAACCAAGCTGTAGCATTTTCATGCTGGCAT  850

seq1  CTTCCAGGTGTGAAGGAAGCAAGACTTTGCCCTCCTGGTGCTCCGTGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGTGTGAAGGAAGCAAGACTTTGCCCTCCTGGTGCTCCGTGGAG  900

seq1  CTCCTTAGTGCCCAGACCAGCGCCATTTCCCCCATCCACGGCAGCTCCGG  950
      ||||||||||||||||||||||||||||||| |||||||||||||||  |
seq2  CTCCTTAGTGCCCAGACCAGCGCCATTTCCCTCATCCACGGCAGCTC--G  948

seq1  GCCATGATTTCCCCAAGAATTAAAGTTCCTGTTCCTCATGCCGGTGAGGG  1000
      |||||||||||||||   ||||||| |||||||||||||||| |||||||
seq2  GCCATGATTTCCCCA--GATTAAAG-TCCTGTTCCTCATGCC-GTGAGGG  994

seq1  GTAGTGGGCTCTGCGCTGACCCCTTGCTCTCCAGGCCGGTGTCTACACTG  1050
      ||||||||||||||||||| |||||||||| || ||||||||||||||||
seq2  GTAGTGGGCTCTGCGCTGA-CCCTTGCTCTTCA-GCCGGTGTCTACACTG  1042

seq1  CTTAGGCTGAGTTAGTGT-GTGCAGCCCTAT-GGGTGCGTGTGGTAATCG  1098
      ||   |||||| |||||| | |||||| ||| ||||||||||||||||||
seq2  CT--AGCTGAG-TAGTGTGGGGCAGCCTTATGGGGTGCGTGTGGTAATCG  1089

seq1  ATTCAGACGGGTG-TTCTGAACACCTGCAGAGAACAGTTACTGCATTCGG  1147
      ||||| ||||||| |||||||| | ||| ||||||   ||||||| ||||
seq2  ATTCA-ACGGGTGTTTCTGAAC-CTTGC-GAGAAC--GTACTGCA-TCGG  1133

seq1  TTGTAGACTTTG  1159
      ||||||||||||
seq2  TTGTAGACTTTG  1145

seq1: chr9_119485853_119486326
seq2: B6Ng01-158A09.g_70_543 (reverse)

seq1  CCCCACCCCCCCCCCCCGTGACTGTGGCCTCCGCTTCTCCTCACAACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCCCCCCCCCGTGACTGTGGCCTCCGCTTCTCCTCACAACATG  50

seq1  GGACCCAATGGATCGCTCAACTAACTGTTGGTTTATCCCTCTGTATTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCAATGGATCGCTCAACTAACTGTTGGTTTATCCCTCTGTATTTTG  100

seq1  TACTGATTGGTTGATGACTGAACTACACTATCCTCACCAGGAAAACTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATTGGTTGATGACTGAACTACACTATCCTCACCAGGAAAACTCCT  150

seq1  GTTCATGCTTCAAAACCCAGACGGAAGGATATCTGGCTAGAACAATACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGCTTCAAAACCCAGACGGAAGGATATCTGGCTAGAACAATACTC  200

seq1  TTGACTCTCTTAATCAAAACTGCGACCTCTTCTGTGTTTCTGGGGAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCTCTTAATCAAAACTGCGACCTCTTCTGTGTTTCTGGGGAGACA  250

seq1  CCTCTGCCATTGCACTCTTCCAAAAGCTTTCTCAAGGACAGGAACGCGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCATTGCACTCTTCCAAAAGCTTTCTCAAGGACAGGAACGCGTC  300

seq1  TCCTGTGAAAGGAACTGTGGTTTTTTCACTGCTGCAGGTTGCCCCTAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGAAAGGAACTGTGGTTTTTTCACTGCTGCAGGTTGCCCCTAGGA  350

seq1  GTCTCTTCTTTGTGGATTGCCTGGGCACCAGCCTCCTCCACTCCCCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTCTTTGTGGATTGCCTGGGCACCAGCCTCCTCCACTCCCCCATC  400

seq1  CCCAGCTGTCTCTGGTACTTCCCACTGTTCTTCCATGCTTGCTCTTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTGTCTCTGGTACTTCCCACTGTTCTTCCATGCTTGCTCTTCATG  450

seq1  CCAAGTGAGTCAACCCTGGAATTC  474
      ||||||||||||||||||||||||
seq2  CCAAGTGAGTCAACCCTGGAATTC  474