BAC Information

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BAC

Clone NameB6Ng01-158D06
Chromosome9 (Build37)
Map Location 64,964,332 - 65,074,952
singlet/doubletdoublet
Overlap geneNope, Punc, Parp16
Upstream geneLctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l, Megf11, Rab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8
Downstream geneCilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158D06.bB6Ng01-158D06.g
ACCDH952220DH952221
length1,1331,127
definitionDH952220|Mus musculus domesticus DNA, BAC clone: B6Ng01-158D06, 5' end.DH952221|Mus musculus domesticus DNA, BAC clone: B6Ng01-158D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,073,810 - 65,074,952)(64,964,332 - 64,965,460)
sequence
gaattcatctaaagaaaaattttttaacgttttaaattgagggccaaaca
agatggctcagtggggaaaaaaagatgcttgccaccaaacctgacaactt
gagctcaatcccaggacctccatggtagaacaagaagttgtcccctgacc
tctacacacatactgccccccaatgtaaaaacattatattttaaaattca
atgcttatttgaaattgcttagctcagtagcagcacagagaagcgcccca
ctgttgcatcagaggacagaacaccacacgatctactctggaccttgtta
tcccagcctgtccctgagagcttccacccaggcaaggatgcctaaatttt
aggacatctggcttctgccagaaactgtgctgaggtaacatcttttctgt
cactggtcctctgggagaagactatggccttaccttataaaaggtaagtg
actggaatgggatttgaaccctaaaacttaaggatcctactactatatag
gatacttttttgtttaacagctggactaagccaattcttctccttgctca
tcccctctctttccccttccccctcccctcccttcccctccagtgctcag
gatagaagtcaagaccttgtgtatggctaagcaagtgttctgccatggag
agacattcctaaggcatggatggacccgtcccgtcacttaacagaaatac
ctgcaaagagaacatctgccccactaacgtacaccatagttatccaagtt
tataggtgaggagacccatgccaaaccacacagcggaacggtccacggtg
tacgtacgttcctgagttctccagacatacgatgagaatctctgactgtg
acacccatgaatctgaatttcaaccagctgcccagtggtgagcatcggcg
ctgtcacaaagcagccaaccttgagaacctgtgaccctatacatcaaagt
cttacctctgccttcttggcactgtggattgtcaggatctggagataaaa
tccagctcaccaggtccaggctgtttgtctgtgtctctggaagactgtag
aagttcttcaagtgggtaacctgcagtgtccgcagctgaaaggaaaaaga
cctccattagcaaggatcccaaataaatggtga
gaattcctaactctccatccattcgtccacccaccatccaccatccacca
tccatccatccatccatctgtctatctgtctatctatttaaaggcagaaa
ggtagggtcccatgtggcctaggctggctttcagcgcctagttctcttgc
ttctacctcctaagtgctacaattgcaggcaagtgctaccacaccatgag
gtgttgagcttaggacccagcacgtccagagttttgtgtatgctagacaa
tccactctcccacctgaactccaccctagcctcacttacattcatctcta
gtaataggagataccttttttttccatgggagccagccatgaatgaaact
aaaaaaagaatttatattaaaatgccaaaatgcagccgggcgtggtggca
cacacctttaatcccagcacttgggaggcagaggcaggcggatttctgag
ttcagggccagcctggtctacagagtgagttctaggacagcgagggctac
acagagaaaccctgtctcaaaaaaccaaaaaaaaaaaaagaaaaaaagaa
aaaaaaagccaaaatgcacattatagaatgaaaagggaagcccctcctga
ctgaacgcaggccttaccattttgagtattccaccatcctcatcctcact
ccagaccagcctaactcaaaaacaaaaaggtttttcattttgtaaaattc
aacaaataagagtgctcaacaatccccctcacaaagggaaccccaagcac
tacaaaagctttgccaaccatgtgcctcaacctgtcatttatctgtttcc
ccaaaccagaattgctttcctttttgtttgttttaatatttttgtgccca
tacatgttttttttttcatttattttatgtattatgaagtacactgcaag
ctgtcttcagacacaccagaaagagggccattacagatggttgtgagcca
cacgtggttgctgggacttgaactcaggacttctggaagaccgtcagtgt
tcttaactgctgagcccatctcaccagccccagaattgtttctaagccat
atttgtaacttctcctccatctgccgattactttccgtatcgttcgaaag
ctagagtttctaactcaattgtaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_65073810_65074952
seq2: B6Ng01-158D06.b_47_1179 (reverse)

seq1  TCACCATTTTATTTGGGATTCTTGCTAATGGAGGTCCTTTCTCCTTTCAG  50
      |||||| |||||||||||| ||||||||||||||| |||| |||||||||
seq2  TCACCA-TTTATTTGGGATCCTTGCTAATGGAGGT-CTTTTTCCTTTCAG  48

seq1  CTTGCGGACACTGGCAGGTTACCCAACTTGAAGGAACTTCTACAGTCTTC  100
      | |||||||||| ||||||||||| ||||||| |||||||||||||||||
seq2  C-TGCGGACACT-GCAGGTTACCC-ACTTGAA-GAACTTCTACAGTCTTC  94

seq1  CAGAGACACAGACAAACAGGCCTGGGACCTGGTGAGCTGGATTTTATCCT  150
      |||||||||||||||||| |||| ||||||||||||||||||||||| ||
seq2  CAGAGACACAGACAAACA-GCCT-GGACCTGGTGAGCTGGATTTTAT-CT  141

seq1  CCAAGATCCTGACAATCCACAGTGCCAAGAAGGCAGAGGTAAGACTTTGA  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CC-AGATCCTGACAATCCACAGTGCCAAGAAGGCAGAGGTAAGACTTTGA  190

seq1  TGTATAGGGTCACAGGTTCTCAAGGTTGGCTGCTTTGTGACAGCGCCGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGGGTCACAGGTTCTCAAGGTTGGCTGCTTTGTGACAGCGCCGAT  240

seq1  GCTCACCACTGGGCAGCTGGTTGAAATTCAGATTCATGGGTGTCACAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCACTGGGCAGCTGGTTGAAATTCAGATTCATGGGTGTCACAGTC  290

seq1  AGAGATTCTCATCGTATGTCTGGAGAACTCAGGAACGTACGTACACCGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTCTCATCGTATGTCTGGAGAACTCAGGAACGTACGTACACCGTG  340

seq1  GACCGTTCCGCTGTGTGGTTTGGCATGGGTCTCCTCACCTATAAACTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGTTCCGCTGTGTGGTTTGGCATGGGTCTCCTCACCTATAAACTTGG  390

seq1  ATAACTATGGTGTACGTTAGTGGGGCAGATGTTCTCTTTGCAGGTATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTATGGTGTACGTTAGTGGGGCAGATGTTCTCTTTGCAGGTATTTC  440

seq1  TGTTAAGTGACGGGACGGGTCCATCCATGCCTTAGGAATGTCTCTCCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGTGACGGGACGGGTCCATCCATGCCTTAGGAATGTCTCTCCATG  490

seq1  GCAGAACACTTGCTTAGCCATACACAAGGTCTTGACTTCTATCCTGAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACACTTGCTTAGCCATACACAAGGTCTTGACTTCTATCCTGAGCA  540

seq1  CTGGAGGGGAAGGGAGGGGAGGGGGAAGGGGAAAGAGAGGGGATGAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGGGAAGGGAGGGGAGGGGGAAGGGGAAAGAGAGGGGATGAGCAA  590

seq1  GGAGAAGAATTGGCTTAGTCCAGCTGTTAAACAAAAAAGTATCCTATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGAATTGGCTTAGTCCAGCTGTTAAACAAAAAAGTATCCTATATA  640

seq1  GTAGTAGGATCCTTAAGTTTTAGGGTTCAAATCCCATTCCAGTCACTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAGGATCCTTAAGTTTTAGGGTTCAAATCCCATTCCAGTCACTTAC  690

seq1  CTTTTATAAGGTAAGGCCATAGTCTTCTCCCAGAGGACCAGTGACAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATAAGGTAAGGCCATAGTCTTCTCCCAGAGGACCAGTGACAGAAA  740

seq1  AGATGTTACCTCAGCACAGTTTCTGGCAGAAGCCAGATGTCCTAAAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTACCTCAGCACAGTTTCTGGCAGAAGCCAGATGTCCTAAAATTT  790

seq1  AGGCATCCTTGCCTGGGTGGAAGCTCTCAGGGACAGGCTGGGATAACAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCCTTGCCTGGGTGGAAGCTCTCAGGGACAGGCTGGGATAACAAG  840

seq1  GTCCAGAGTAGATCGTGTGGTGTTCTGTCCTCTGATGCAACAGTGGGGCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAGTAGATCGTGTGGTGTTCTGTCCTCTGATGCAACAGTGGGGCG  890

seq1  CTTCTCTGTGCTGCTACTGAGCTAAGCAATTTCAAATAAGCATTGAATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGTGCTGCTACTGAGCTAAGCAATTTCAAATAAGCATTGAATTT  940

seq1  TAAAATATAATGTTTTTACATTGGGGGGCAGTATGTGTGTAGAGGTCAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATAATGTTTTTACATTGGGGGGCAGTATGTGTGTAGAGGTCAGG  990

seq1  GGACAACTTCTTGTTCTACCATGGAGGTCCTGGGATTGAGCTCAAGTTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACTTCTTGTTCTACCATGGAGGTCCTGGGATTGAGCTCAAGTTGT  1040

seq1  CAGGTTTGGTGGCAAGCATCTTTTTTTCCCCACTGAGCCATCTTGTTTGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTGGTGGCAAGCATCTTTTTTTCCCCACTGAGCCATCTTGTTTGG  1090

seq1  CCCTCAATTTAAAACGTTAAAAAATTTTTCTTTAGATGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAATTTAAAACGTTAAAAAATTTTTCTTTAGATGAATTC  1133

seq1: chr9_64964332_64965460
seq2: B6Ng01-158D06.g_66_1192

seq1  GAATTCCTAACTCTCCATCCATTCGTCCACCCACCATCCACCATCCACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAACTCTCCATCCATTCGTCCACCCACCATCCACCATCCACCA  50

seq1  TCCATCCATCCATCCATCTGTCTATCTGTCTATCTATTTAAAGGCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCATCCATCCATCTGTCTATCTGTCTATCTATTTAAAGGCAGAAA  100

seq1  GGTAGGGTCCCATGTGGCCTAGGCTGGCTTTCAGCGCCTAGTTCTCTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGTCCCATGTGGCCTAGGCTGGCTTTCAGCGCCTAGTTCTCTTGC  150

seq1  TTCTACCTCCTAAGTGCTACAATTGCAGGCAAGTGCTACCACACCATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTCCTAAGTGCTACAATTGCAGGCAAGTGCTACCACACCATGAG  200

seq1  GTGTTGAGCTTAGGACCCAGCACGTCCAGAGTTTTGTGTATGCTAGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGAGCTTAGGACCCAGCACGTCCAGAGTTTTGTGTATGCTAGACAA  250

seq1  TCCACTCTCCCACCTGAACTCCACCCTAGCCTCACTTACATTCATCTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCTCCCACCTGAACTCCACCCTAGCCTCACTTACATTCATCTCTA  300

seq1  GTAATAGGAGATACCTTTTTTTTCCATGGGAGCCAGCCATGAATGAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGGAGATACCTTTTTTTTCCATGGGAGCCAGCCATGAATGAAACT  350

seq1  AAAAAAAGAATTTATATTAAAATGCCAAAATGCAGCCGGGCGTGGTGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAATTTATATTAAAATGCCAAAATGCAGCCGGGCGTGGTGGCA  400

seq1  CACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAG  450

seq1  TTCAGGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCGAGGGCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCGAGGGCTAC  500

seq1  ACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAAGAAAAAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAAGAAAAAAAGAA  550

seq1  AAAAAAAGCCAAAATGCACATTATAGAATGAAAAGGGAAGCCCCTCCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGCCAAAATGCACATTATAGAATGAAAAGGGAAGCCCCTCCTGA  600

seq1  CTGAACGCAGGCCTTACCATTTTGAGTATTCCACCATCCTCATCCTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACGCAGGCCTTACCATTTTGAGTATTCCACCATCCTCATCCTCACT  650

seq1  CCAGACCAGCCTAACTCAAAAACAAAAAGG-TTTTCATTTTGTAAAATTC  699
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCAGACCAGCCTAACTCAAAAACAAAAAGGTTTTTCATTTTGTAAAATTC  700

seq1  AACAAATAAGAGTGCTCAACAATCCCCCTCACAAAGGGAACCCCAAGCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAAGAGTGCTCAACAATCCCCCTCACAAAGGGAACCCCAAGCAC  750

seq1  TACAAAAGCTTTGCCAACCATGTGCCTCAACCTGTCATTTATCTGTTTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAGCTTTGCCAACCATGTGCCTCAACCTGTCATTTATCTGTTTCC  800

seq1  CCAAACCAGAATTGC-TTCCTTTTTGTTTGTTTTAAATATTTTTGTGCCC  848
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  CCAAACCAGAATTGCTTTCCTTTTTGTTTGTTTT-AATATTTTTGTGCCC  849

seq1  ATACATGTTTTTTTTTTCATTTATTTTATGTA-TATG-AGTACACTGCAA  896
      |||||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  ATACATGTTTTTTTTTTCATTTATTTTATGTATTATGAAGTACACTGCAA  899

seq1  GCTGTCTTCAGACACACCAG-AAGAGGGCCATTACAGATGGTTGTGAGCC  945
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCTGTCTTCAGACACACCAGAAAGAGGGCCATTACAGATGGTTGTGAGCC  949

seq1  ACCACGTGGTTGCTGGGACTTGAACTCAGGACCTCTGGAAGAGCAGTCAG  995
      | |||||||||||||||||||||||||||||| ||||||||| | |||||
seq2  A-CACGTGGTTGCTGGGACTTGAACTCAGGACTTCTGGAAGA-CCGTCAG  997

seq1  TGCTCTTAACTGCTGAG-CCATCTCACCAGCCCCAGAATTGTTTCTTAAG  1044
      || |||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  TGTTCTTAACTGCTGAGCCCATCTCACCAGCCCCAGAATTGTTTC-TAAG  1046

seq1  CACTATTTTGTAACTTCTCCCCTACTAGCCAATACATTTCAGTCATCTTT  1094
      |  || |||||||||||||| | |   ||| ||   |||| || ||| ||
seq2  CCATA-TTTGTAACTTCTCCTCCATCTGCCGATTACTTTCCGT-ATCGTT  1094

seq1  CAGAAGCCAGAGTTTCTAAAACCACATTGTAACAA  1129
      |  |||| |||||||||  |||   ||||||||||
seq2  CGAAAGCTAGAGTTTCT--AACTCAATTGTAACAA  1127