BAC Information

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BAC

Clone NameB6Ng01-158D09
Chromosome9 (Build37)
Map Location 56,533,784 - 56,534,622
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3, C230081A13Rik, Hmg20a, LOC100039535, LOC100039549, LOC640537, Lingo1
Downstream geneOdf3l1, Cspg4, Sh3px3, Imp3, Snupn, Ptpn9, 2700012I20Rik, Sin3a, Man2c1, Neil1, Commd4, 1700041C23Rik, Trcg1, 1700017B05Rik, EG330948, Ppcdc, Scamp5, D9Wsu149, LOC620603, Rpp25, Cox5a, 2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158D09.bB6Ng01-158D09.g
ACCDH952226DH952227
length388839
definitionDH952226|Mus musculus domesticus DNA, BAC clone: B6Ng01-158D09, 5' end.DH952227|Mus musculus domesticus DNA, BAC clone: B6Ng01-158D09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
actctgtagaccaaactggccttgaagtcacagaaatccacctgcctctg
ccttccaaatgttgagattaaaggcacttgttaccactgcccagatgtcc
atttcatttttaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgcgtgagcgcgggagtgtaggtcagaggacca
cttccagaaataatttctctcctgctatttgggtcttgggtcccagggat
caaatcactggcaaaagtctttacccactgggccgtcgaagcagtccctt
ctgcttagttttgctcttctctctctctcctcatttatgtatctgtgtga
atggctgacacatgtgagactgttttgacaaaggtcag
gaattcaagaaatgaacgtatcaaagaaagttcttgaaacccaaggccat
atacagaaagacggaaacgtatccaattgaagctgccactgtgtctaggg
accttgactgtgaatgcagtctgtctctcagtagtgagatgcaggcagct
ctcccagcagctctcctggcctacactccaggagctgaatgccaaggtga
gctgctatccacacctgactcactccctttccgccagggctggcatagat
gacctcagaggctggggctgccagccaaatagcatccgtccacagctgta
gcaataaaggccaagaggtgaaagacctcacatgattgaacaggaaatgt
accccccaccaccaccaccacgcttttgaggaagtcctaagtgctaggtg
tgccataggtaccagcaatgcacgacacgagggcatgagggcgtgacata
gaggagtctggccctgtcacaaagccaggtaataagcagaaaaacaagac
acttcctaagagtgtcaagctcagcgacaaccctaacatccagccacaga
ggagggaacaggagaaggacagggggacgctctagacagagggtcagggg
aggtcttcctgaagggggccacaactgaacttaggcttcaggaagtgagg
cttccaggagcctgaggcactgaaggccaagatggggcctttggctctga
tcccaagaacaagaaaagccactggagggccttaaccagataaatgcaat
gatgtttttcttcattgttaaaagtcctctcaagctgccaactggagcct
gggctgcttcccccagagcaaggggggtggggggaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_56533784_56534622
seq2: B6Ng01-158D09.g_71_909

seq1  GAATTCAAGAAATGAACGTATCAAAGAAAGTTCTTGAAACCCAAGGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAATGAACGTATCAAAGAAAGTTCTTGAAACCCAAGGCCAT  50

seq1  ATACAGAAAGACGGAAACGTATCCAATTGAAGCTGCCACTGTGTCTAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAAAGACGGAAACGTATCCAATTGAAGCTGCCACTGTGTCTAGGG  100

seq1  ACCTTGACTGTGAATGCAGTCTGTCTCTCAGTAGTGAGATGCAGGCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGACTGTGAATGCAGTCTGTCTCTCAGTAGTGAGATGCAGGCAGCT  150

seq1  CTCCCAGCAGCTCTCCTGGCCTACACTCCAGGAGCTGAATGCCAAGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGCAGCTCTCCTGGCCTACACTCCAGGAGCTGAATGCCAAGGTGA  200

seq1  GCTGCTATCCACACCTGACTCACTCCCTTTCCGCCAGGGCTGGCATAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTATCCACACCTGACTCACTCCCTTTCCGCCAGGGCTGGCATAGAT  250

seq1  GACCTCAGAGGCTGGGGCTGCCAGCCAAATAGCATCCGTCCACAGCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCAGAGGCTGGGGCTGCCAGCCAAATAGCATCCGTCCACAGCTGTA  300

seq1  GCAATAAAGGCCAAGAGGTGAAAGACCTCACATGATTGAACAGGAAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAAGGCCAAGAGGTGAAAGACCTCACATGATTGAACAGGAAATGT  350

seq1  ACCCCCCACCACCACCACCACGCTTTTGAGGAAGTCCTAAGTGCTAGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCACCACCACCACCACGCTTTTGAGGAAGTCCTAAGTGCTAGGTG  400

seq1  TGCCATAGGTACCAGCAATGCACGACACGAGGGCATGAGGGCGTGACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATAGGTACCAGCAATGCACGACACGAGGGCATGAGGGCGTGACATA  450

seq1  GAGGAGTCTGGCCCTGTCACAAAGCCAGGTAATAAGCAGAAAAACAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTCTGGCCCTGTCACAAAGCCAGGTAATAAGCAGAAAAACAAGAC  500

seq1  ACTTCCTAAGAGTGTCAAGCTCAGCGACAACCCTAACATCCAGCCACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTAAGAGTGTCAAGCTCAGCGACAACCCTAACATCCAGCCACAGA  550

seq1  GGAGGGAACAGGAGAAGGACAGGGGGACGCTCTAGACAGAGGGTCAGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAACAGGAGAAGGACAGGGGGACGCTCTAGACAGAGGGTCAGGGG  600

seq1  AGGTCTTCCTGAAGGGGGCCACAACTGAACTTAGGCTTCAGGAAGTGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTCCTGAAGGGGGCCACAACTGAACTTAGGCTTCAGGAAGTGAGG  650

seq1  CTTCCAGGAGCCTGAGGCACTGAAGGCCAAGATGGGGCCTTTGGCTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGAGCCTGAGGCACTGAAGGCCAAGATGGGGCCTTTGGCTCTGA  700

seq1  TCCCAAGAACAAGAAAAGCCACTGGAGGGCCTTAACCAGATAAATGCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGAACAAGAAAAGCCACTGGAGGGCCTTAACCAGATAAATGCAAT  750

seq1  GATGTTTTTCTTCATTGTTAAAAGTCCTCTCAAGCTGCCAACTGGAGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTTCTTCATTGTTAAAAGTCCTCTCAAGCTGCCAACTGGAGCCT  800

seq1  GGGCTGCTTCCCCCAGAGCAAGGGGGGTGGGGGGAAGGG  839
      |||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCTTCCCCCAGAGCAAGGGGGGTGGGGGGAAGGG  839