BAC Information

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BAC

Clone NameB6Ng01-158F08
Chromosome9 (Build37)
Map Location 50,173,713 - 50,293,369
singlet/doubletdoublet
Overlap geneLOC672372
Upstream geneDrd2, Ankk1, Ttc12, Ncam1, EG667975, LOC100042806, LOC100043346
Downstream gene1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158F08.bB6Ng01-158F08.g
ACCDH952309DH952310
length637980
definitionDH952309|Mus musculus domesticus DNA, BAC clone: B6Ng01-158F08, 5' end.DH952310|Mus musculus domesticus DNA, BAC clone: B6Ng01-158F08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,292,732 - 50,293,369)(50,173,713 - 50,174,692)
sequence
gaattccagggtttttagagaaatgcccacaaaacttgtagtcctgttta
ttttctccaatttctgtggacagttctaagcatttattttcccattaaat
tatttctgacaactttcaaaatgttacttttttttccctcatcatttcac
gggaattctttagagggaactccttggaacctaccacctcactaacaaaa
ttcaggttcaaaggaattggctcctcaagattacctacaatttgaactct
gtggacacagagcttaatgctgtttctcctcctcctcctcctcctcctcc
acttccacctcctcctcctcttcctcttcctcctcctcctcctcttcttc
ctcctcttcctcttcttccttttcctcttcttcctcctcctgtttacaaa
tggatgaaaagtatcacatcttgaaacacacatactcacacacatacaca
cacaaagacacagaaaagattgaggatttcaactggccttcaacagaaaa
aggtccggcctcctaaggctcgttccagtgaaaacacgctcctgcagtac
acacttcacttattgacaaggcaaacctggcaagaacaggctttgttacc
tagagtactgttcagtccgtatgcttttccttaaaca
gaattcaaaccccagggacctgagttgcctgcaaatgtactcccatacag
gcggctcttggatagatgttggctgcccagggaagccaacagggtcaaga
gactgtgctctgaatagctgattgccagtatacgtttcctgacaccagac
ccatgtcctggagactcgagagcccgagagggttcttcaagattttccct
atgagagcctgaaaaatgatgactcagaaagtaaagtgcttgctgtacaa
caagaagatctgagttcagatccctccctgggtatgggaggatgctcctg
taaccacagtggtggatgagcacagggtagatccctgatgctctctagcc
agccagtctagataaaacagtgagcttcaggtaaagtgaaagacttatcc
ttaaaagctaagatggagagttataggacacttccaacattggcctccat
atgtgcatgcatgggcacatacactcatatatacatgtgtacctgtgcaa
ccatcacacacacacaacaccatacaacaacaaagaataccaggatggtc
tattaggaggtcccaagatcattagtagctactctctaccttccctgcct
cagctacaccccagccctggagaagaggttttcaaagcagccttttagac
agactttctcgaggaagaatgagagaaacttcagcaaagggattgtgctt
tttgtatatttgtgtttggtaatttgggggttttagagagccctggctag
cctccaagtcactatgtagccaaggttatccttgtttggttatgggtata
atcgtgtgtgtgtgtgtgcttgtgtatttgtatgtgtgcatgtgtctgct
cacttgtgtgcatatcagtatgctagtgtgtttacatatatatgttgcaa
tgtgtgtgcctgtgctcgcgcaatggactgttgtgtgcacgtatttgctg
ttgcagtgtttttgtgattttgtgtgggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_50292732_50293369
seq2: B6Ng01-158F08.b_48_684 (reverse)

seq1  TGTTTAAGGAAAAGCACACTGACTGCACAGAACTCTAGGAAACAAAGCCT  50
      |||||||||||||||| || ||||| |||| |||||||| ||||||||||
seq2  TGTTTAAGGAAAAGCATACGGACTGAACAGTACTCTAGGTAACAAAGCCT  50

seq1  GTTCTGACCAGAAATGCCCTGACACTAAGTGTGGTGTACGCTGCAGGAGC  100
      |||||  ||||   |||| || || ||||||  ||||   ||||||||||
seq2  GTTCTTGCCAGGTTTGCCTTGTCAATAAGTGAAGTGTGTACTGCAGGAGC  100

seq1  CTGACCTACACTGGGACGAGCCTCTGGAGGCAGGACATTTTTCTGTTGAA  150
       ||   | |||||| ||||||||  |||||| |||| |||||||||||||
seq2  GTG-TTTTCACTGGAACGAGCCTTAGGAGGCCGGACCTTTTTCTGTTGAA  149

seq1  GGACAGTTGAAATACTAAATTCTTTGTGTGTGTGTGTGTGTGTGTGTGTG  200
      || |||||||||| || |||  ||| ||||| | ||||||||| ||||||
seq2  GGCCAGTTGAAATCCTCAATCTTTTCTGTGTCTTTGTGTGTGTATGTGTG  199

seq1  TGTGTGTGTGTGTTTCAAGATGTGATCCTTTTCATCCATTTGTAAACAGA  250
      || || |||||||||||||||||||| |||||||||||||||||||||| 
seq2  TGAGTATGTGTGTTTCAAGATGTGATACTTTTCATCCATTTGTAAACAGG  249

seq1  AGGAGGAAGAAGAGGAAAAGGAAGAAGAGGAAGAGGAGGAAGAAGAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAGAAGAGGAAAAGGAAGAAGAGGAAGAGGAGGAAGAAGAGGAG  299

seq1  GAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGA  350
      ||||||||||||||||||||||||||||||| ||||| ||||||||||||
seq2  GAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGTGGAAGTGGAGGAGGAGGA  349

seq1  GGAGGAGGAGGAGAAACAGCATTAAGCTCTGTGTCCACAGAGTTCAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGGAGAAACAGCATTAAGCTCTGTGTCCACAGAGTTCAAATT  399

seq1  GTAGGTAATCTTGAGGAGCCAATTCCTTTGAACCTGAATTTTGTTAGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTAATCTTGAGGAGCCAATTCCTTTGAACCTGAATTTTGTTAGTGA  449

seq1  GGTGGTAGGTTCCAAGGAGTTCCCTCTAAAGAATTCCCGTGAAATGATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTAGGTTCCAAGGAGTTCCCTCTAAAGAATTCCCGTGAAATGATGA  499

seq1  GGGAAAAAAAAGTAACATTTTGAAAGTTGTCAGAAATAATTTAATGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAAAAAGTAACATTTTGAAAGTTGTCAGAAATAATTTAATGGGAA  549

seq1  AATAAATGCTTAGAACTGTCCACAGAAATTGGAGAAAATAAACAGGACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGCTTAGAACTGTCCACAGAAATTGGAGAAAATAAACAGGACTA  599

seq1  CAAGTTTTGTGGGCATTTCTCTAAAAACCCTGGAATTC  638
      ||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTTGTGGGCATTTCTCTAAAAACCCTGGAATTC  637

seq1: chr9_50173713_50174692
seq2: B6Ng01-158F08.g_69_1048

seq1  GAATTCAAACCCCAGGGACCTGAGTTGCCTGCAAATGTACTCCCATACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCCCAGGGACCTGAGTTGCCTGCAAATGTACTCCCATACAG  50

seq1  GCGGCTCTTGGATAGATGTTGGCTGCCCAGGGAAGCCAACAGGGTCAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTCTTGGATAGATGTTGGCTGCCCAGGGAAGCCAACAGGGTCAAGA  100

seq1  GACTGTGCTCTGAATAGCTGATTGCCAGTATACGTTTCCTGACACCAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGCTCTGAATAGCTGATTGCCAGTATACGTTTCCTGACACCAGAC  150

seq1  CCATGTCCTGGAGACTCGAGAGCCCGAGAGGGTTCTTCAAGATTTTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCCTGGAGACTCGAGAGCCCGAGAGGGTTCTTCAAGATTTTCCCT  200

seq1  ATGAGAGCCTGAAAAATGATGACTCAGAAAGTAAAGTGCTTGCTGTACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGCCTGAAAAATGATGACTCAGAAAGTAAAGTGCTTGCTGTACAA  250

seq1  CAAGAAGATCTGAGTTCAGATCCCTCCCTGGGTATGGGAGGATGCTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGATCTGAGTTCAGATCCCTCCCTGGGTATGGGAGGATGCTCCTG  300

seq1  TAACCACAGTGGTGGATGAGCACAGGGTAGATCCCTGATGCTCTCTAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACAGTGGTGGATGAGCACAGGGTAGATCCCTGATGCTCTCTAGCC  350

seq1  AGCCAGTCTAGATAAAACAGTGAGCTTCAGGTAAAGTGAAAGACTTATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTCTAGATAAAACAGTGAGCTTCAGGTAAAGTGAAAGACTTATCC  400

seq1  TTAAAAGCTAAGATGGAGAGTTATAGGACACTTCCAACATTGGCCTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGCTAAGATGGAGAGTTATAGGACACTTCCAACATTGGCCTCCAT  450

seq1  ATGTGCATGCATGGGCACATACACTCATATATACATGTGTACCTGTGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCATGCATGGGCACATACACTCATATATACATGTGTACCTGTGCAA  500

seq1  CCATCACACACACACAACACCATACAACAACAAAGAATACCAGGATGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACACACACACAACACCATACAACAACAAAGAATACCAGGATGGTC  550

seq1  TATTAGGAGGTCCCAAGATCATTAGTAGCTACTCTCTACCTTCCCTGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGAGGTCCCAAGATCATTAGTAGCTACTCTCTACCTTCCCTGCCT  600

seq1  CAGCTACACCCCAGCCCTGGAGAAGAGGTTTTCAAAGCAGCCTTTTAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACACCCCAGCCCTGGAGAAGAGGTTTTCAAAGCAGCCTTTTAGAC  650

seq1  AGACTTTCTCGAGGAAGAATGAGAGAAACTTCAGCAAAGGGATTGTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTCTCGAGGAAGAATGAGAGAAACTTCAGCAAAGGGATTGTGCTT  700

seq1  TTTGTATATTTGTGTTTGGTAATTTGGGGGTTTTAGAGAGCCCTGGCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATATTTGTGTTTGGTAATTTGGGGGTTTTAGAGAGCCCTGGCTAG  750

seq1  CCTCCAAGTCACTATGTAGCCAAGGTTATCCTTGTTTGGTTATGGGTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAGTCACTATGTAGCCAAGGTTATCCTTGTTTGGTTATGGGTATA  800

seq1  ATCGTGTGTGTGTGTGTGCTTGTGTATTTGTATGTGTGCATGTGTCTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGTGTGTGTGTGTGCTTGTGTATTTGTATGTGTGCATGTGTCTGCT  850

seq1  CACTTGTGTGCATATCAGTATGCTAGTGTGTTTACATATATATG-TGCAA  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CACTTGTGTGCATATCAGTATGCTAGTGTGTTTACATATATATGTTGCAA  900

seq1  TGTGTGTGCCTGTGCTCGCGCAATGGACTGGTGTGTGCACGTATTTGCTG  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTGTGTGCCTGTGCTCGCGCAATGGACTGTTGTGTGCACGTATTTGCTG  950

seq1  TTGCGAGTGTTTCTGTGATTATGTGTGGGCT  980
      |||| ||||||| ||||||| ||||||||||
seq2  TTGC-AGTGTTTTTGTGATTTTGTGTGGGCT  980