BAC Information

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BAC

Clone NameB6Ng01-158J03
Chromosome9 (Build37)
Map Location 83,570,048 - 83,670,902
singlet/doubletdoublet
Overlap geneLOC100039222
Upstream geneIrak1bp1, Phip, LOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2
Downstream geneElovl4, Ttk, EG546150, Bckdhb, EG666669
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158J03.bB6Ng01-158J03.g
ACCDH952482DH952483
length1,1081,129
definitionDH952482|Mus musculus domesticus DNA, BAC clone: B6Ng01-158J03, 5' end.DH952483|Mus musculus domesticus DNA, BAC clone: B6Ng01-158J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,570,048 - 83,571,190)(83,669,762 - 83,670,902)
sequence
gaattctcatttctaaagcatctcagggctagaatagggttcatggtaga
gtggttgccttctaggaacaaggctctgagttcctgcccctcacctcact
ccaggggataccaactgcatcatgttgtgaaaacctcagcactacagcat
ccttttgaatcttttcaggagggcataagagacagcctggttcagaacca
tggtttatgtttctttatccccttgagtataattctccttatttcttttt
ggctaatttgttatcctctttcttcaacatactgctctgtctgtctctgt
ctccctctctgtctctctgtctctctcctgttccttttaaaacacgctat
ctttttctttcctgtctctttatttactttctgtcctcaaaagctcaagc
caggtcctagtctccaggaaaagattgttcaaagcagcccaagttctcat
cttttcttttttcttattctgggttttggagtctgtagaaaacttcaata
attatctgcgaactgatcacaggcttttttcctccttacatgagctcttg
tggaagctcttgttatcacagaaaaagtagcaacaatatttaacatgctt
aacctgtccccgttaaagcagagaactggccattgttgatatattaaccc
tgttgggttaattactattgtccccttttgtgagtaaggaaaactgacaa
cagataagatgcatgattcactgaaagtttgccacacaggactacctctc
aggcaaggcgtgaagagttctaatataatttttagcttaggctttttgct
ggggcaattttccagctactgtttaaactcaacccaattatgctagccta
tgacctgcctctctgctccactctggtccgtatctgtccccttcgtgtct
gctttaagtctgccatgtctgcccttcatcattctctctgctaggaagtt
ccacccttgtacttctgcgcagctatgctgtcagatcttatactacaata
acagtgcgacaaccatgagacatctcttagatgccttagcgatgagtagc
aacatacaaaatagataccaggacagcaagaatgacaacgtatctgcagt
acttagct
gaattctatcccctggttcccctgcttccctccctccctccctcccttcc
ttccttccttccttccttcctgtcttagagaagccagctcttccttttct
tagtttagaattctctccttcaagtttgccaggagggagaggacggcgct
agttaagactcttttatcacccgtgatgcattcggtttaactgaggctct
cctccctgtgaaggaaggattctgtgaaccagtctttcaagagtaatgat
tacctagctatttggaaatgaggttgcgtgggtagatgatgaggtttcaa
gatatggaggcattatgctaacaagtcacaccccacctctctcggctttt
gttctaacatactcgatctgggcatcctggacagcacacattccacagga
gtattatatagttaatagtattatctgttcatacagtttcatttcatgta
tatttacatattttctctcagtgatgagtttgaaaccaaggcctcatgca
tgctaggcaagagctctgtctgtgagctacatcccgagatttcacatgaa
ttctaatttcaggtccgatcagaaaaattttaaagacgttccatgatcac
aaaagggaaagtagcctctctccaaatgtgcatttagaaaaaagaaaaga
ataaaaggaaggctgtagctttgttagaagaactacaccagcccttataa
aagcgaaatctaatattttctgcactaagaaaatatcctgggggcttgag
gcgaaagagcaaccagatgaggctgaggaacagatttcttacagttgaga
ttgttttcatcctagaagtttaccataaagactaataacctcataattct
agctccattgttgttagtgtgttaggcatggactggcataaggaattcat
tcattcgtggtgatactctctctgttctcctcagcacggcagagactgga
aacccagatttcattcgactcctttgtgagctgtgtttctctgacactta
tcgtttgtcagccaaggaaaactgaaatctagagcagaggcacaagaatg
catcttgtagctaagcagcaggttctccgaacagttggcagcagctgggt
ctgtatgctccactgtctgtattcagtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_83570048_83571190
seq2: B6Ng01-158J03.b_48_1155

seq1  GAATTCTCATTTCTAAAGCATCTCAGGGCTAGAATAGGGTTCATGGTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTTCTAAAGCATCTCAGGGCTAGAATAGGGTTCATGGTAGA  50

seq1  GTGGTTGCCTTCTAGGAACAAGGCTCTGAGTTCCTGCCCCTCACCTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGCCTTCTAGGAACAAGGCTCTGAGTTCCTGCCCCTCACCTCACT  100

seq1  CCAGGGGATACCAACTGCATCATGTTGTGAAAACCTCAGCACTACAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGATACCAACTGCATCATGTTGTGAAAACCTCAGCACTACAGCAT  150

seq1  CCTTTTGAATCTTTTCAGGAGGGCATAAGAGACAGCCTGGTTCAGAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGAATCTTTTCAGGAGGGCATAAGAGACAGCCTGGTTCAGAACCA  200

seq1  TGGTTTATGTTTCTTTATCCCCTTGAGTATAATTCTCCTTATTTCTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTATGTTTCTTTATCCCCTTGAGTATAATTCTCCTTATTTCTTTTT  250

seq1  GGCTAATTTGTTATCCTCTTTCTTCAACATACTGCTCTGTCTGTCTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATTTGTTATCCTCTTTCTTCAACATACTGCTCTGTCTGTCTCTGT  300

seq1  CTCCCTCTCTGTCTCTCTGTCTCTCTCCTGTTCCTTTTAAAACACGCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTCTGTCTCTCTGTCTCTCTCCTGTTCCTTTTAAAACACGCTAT  350

seq1  CTTTTTCTTTCCTGTCTCTTTATTTACTTTCTGTCCTCAAAAGCTCAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTTCCTGTCTCTTTATTTACTTTCTGTCCTCAAAAGCTCAAGC  400

seq1  CAGGTCCTAGTCTCCAGGAAAAGATTGTTCAAAGCAGCCCAAGTTCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCTAGTCTCCAGGAAAAGATTGTTCAAAGCAGCCCAAGTTCTCAT  450

seq1  CTTTTCTTTTTTCTTATTCTGGGTTTTGGAGTCTGTAGAAAACTTCAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTTTCTTATTCTGGGTTTTGGAGTCTGTAGAAAACTTCAATA  500

seq1  ATTATCTGCGAACTGATCACAGGCTTTTTTCCTCCTTACATGAGCTCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTGCGAACTGATCACAGGCTTTTTTCCTCCTTACATGAGCTCTTG  550

seq1  TGGAAGCTCTTGTTATCACAGAAAAAGTAGCAACAATATTTAACATGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCTCTTGTTATCACAGAAAAAGTAGCAACAATATTTAACATGCTT  600

seq1  AACCTGTCCCCGTTAAAGCAGAGAACTGGCCATTGTTGATATATTAACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTCCCCGTTAAAGCAGAGAACTGGCCATTGTTGATATATTAACCC  650

seq1  TGTTGGGTTAATTACTATTGTCCCCTTTTGTGAGTAAGGAAAACTGACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGTTAATTACTATTGTCCCCTTTTGTGAGTAAGGAAAACTGACAA  700

seq1  CAGATAAGATGCATGATTCACTGAAAGTTTGCCACACAGGACTACCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAGATGCATGATTCACTGAAAGTTTGCCACACAGGACTACCTCTC  750

seq1  AGGGCAAGGCGTGAAGAGTTCTAATATAATTTTTAGCTTAGGCTTTTTGC  800
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GGCAAGGCGTGAAGAGTTCTAATATAATTTTTAGCTTAGGCTTTTTGC  799

seq1  TGGGGCAATTTTCCAGCTACTGTTTAAACTCAACCCAATTATGCTAGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAATTTTCCAGCTACTGTTTAAACTCAACCCAATTATGCTAGCCT  849

seq1  ATGACCTGCCTCTCTGCTCCACTCTGGTCCGTATCTGTCCCCTTCGTTGT  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATGACCTGCCTCTCTGCTCCACTCTGGTCCGTATCTGTCCCCTTCG-TGT  898

seq1  CTGCTTTAAGTCTGCCATGTCTGCCCTTCATCATTCTCTCTGCTAGGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTAAGTCTGCCATGTCTGCCCTTCATCATTCTCTCTGCTAGGAAG  948

seq1  TTCCACCCTTGTACTTCCTGCGCCAGCTATTGGCTGTCAGATCTTTATTA  1000
      |||||||||||||||| ||||| |||||||  |||||||||||||   ||
seq2  TTCCACCCTTGTACTT-CTGCG-CAGCTAT--GCTGTCAGATCTT--ATA  992

seq1  CTACCAATTAACAGTGCGACAACACATGAGACATCTCTTAGATTGCCTTT  1050
      ||||  | ||||||||||||||| |||||||||||||||||| |||| ||
seq2  CTAC--AATAACAGTGCGACAAC-CATGAGACATCTCTTAGA-TGCC-TT  1037

seq1  AGGCAGATGAGGTAGGGCAAACATTAACAAAAATAGATAACCCAGTGACA  1100
      ||   ||||| ||||    |||||  || ||||||||||  |||| ||||
seq2  AG--CGATGA-GTAG---CAACAT--AC-AAAATAGATA--CCAG-GACA  1075

seq1  GGCCATAGAAATGACAATACCGTAATTCTGCCAGTACTTAGCT  1143
      |  || || ||||||||   ||||  |||| ||||||||||||
seq2  G--CA-AG-AATGACAA---CGTA--TCTG-CAGTACTTAGCT  1108

seq1: chr9_83669762_83670902
seq2: B6Ng01-158J03.g_69_1197 (reverse)

seq1  AGACTG-ATACAGACAGTGGAGCATACAGA-CCAGCTGCTGCCAACTTGT  48
      |||||| ||||||||||||||||||||||| ||||||||||||||| |||
seq2  AGACTGAATACAGACAGTGGAGCATACAGACCCAGCTGCTGCCAAC-TGT  49

seq1  CTGGAAGGAACCTGCTGCTTTAGCTACAAGATGCAT--CTGTGCCCTCTG  96
        |||  ||||||||||| |||||||||||||||||   |||| ||||||
seq2  TCGGA--GAACCTGCTGC-TTAGCTACAAGATGCATTCTTGTG-CCTCTG  95

seq1  CCTTCTTAAGATTTCAGGTTTTCCCTTGTGCTGACAAACGATAAAGTTGT  146
      |  |||  |||||||||  ||| ||||| |||||||||||||||   |||
seq2  C--TCT--AGATTTCAG--TTTTCCTTG-GCTGACAAACGATAA--GTGT  136

seq1  CAGAGAAACACAGCTCACAAAGGAGTCGAATGGAAATCTGGGTTTCCAGT  196
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGAGAAACACAGCTCACAAAGGAGTCGAAT-GAAATCTGGGTTTCCAGT  185

seq1  CTCTGCCGTGCTGAGGGAGAACAGAGAGAGTATCACCACGAATGAATGAA  246
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCTGCCGTGCTGA-GGAGAACAGAGAGAGTATCACCACGAATGAATGAA  234

seq1  TTCCTTATGCCAGTCCATGCCTAACACACTAACAACAATGGAGCTAGAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTATGCCAGTCCATGCCTAACACACTAACAACAATGGAGCTAGAAT  284

seq1  TATGAGGTTATTAGTCTTTATGGTAAACTTCTAGGATGAAAACAATCTCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGTTATTAGTCTTTATGGTAAACTTCTAGGATGAAAACAATCTCA  334

seq1  ACTGTAAGAAATCTGTTCCTCAGCCTCATCTGGTTGCTCTTTCGCCTCAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAGAAATCTGTTCCTCAGCCTCATCTGGTTGCTCTTTCGCCTCAA  384

seq1  GCCCCCAGGATATTTTCTTAGTGCAGAAAATATTAGATTTCGCTTTTATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCAGGATATTTTCTTAGTGCAGAAAATATTAGATTTCGCTTTTATA  434

seq1  AGGGCTGGTGTAGTTCTTCTAACAAAGCTACAGCCTTCCTTTTATTCTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGGTGTAGTTCTTCTAACAAAGCTACAGCCTTCCTTTTATTCTTT  484

seq1  TCTTTTTTCTAAATGCACATTTGGAGAGAGGCTACTTTCCCTTTTGTGAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTCTAAATGCACATTTGGAGAGAGGCTACTTTCCCTTTTGTGAT  534

seq1  CATGGAACGTCTTTAAAATTTTTCTGATCGGACCTGAAATTAGAATTCAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAACGTCTTTAAAATTTTTCTGATCGGACCTGAAATTAGAATTCAT  584

seq1  GTGAAATCTCGGGATGTAGCTCACAGACAGAGCTCTTGCCTAGCATGCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATCTCGGGATGTAGCTCACAGACAGAGCTCTTGCCTAGCATGCAT  634

seq1  GAGGCCTTGGTTTCAAACTCATCACTGAGAGAAAATATGTAAATATACAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTTGGTTTCAAACTCATCACTGAGAGAAAATATGTAAATATACAT  684

seq1  GAAATGAAACTGTATGAACAGATAATACTATTAACTATATAATACTCCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAACTGTATGAACAGATAATACTATTAACTATATAATACTCCTG  734

seq1  TGGAATGTGTGCTGTCCAGGATGCCCAGATCGAGTATGTTAGAACAAAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGTGTGCTGTCCAGGATGCCCAGATCGAGTATGTTAGAACAAAAG  784

seq1  CCGAGAGAGGTGGGGTGTGACTTGTTAGCATAATGCCTCCATATCTTGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGAGAGGTGGGGTGTGACTTGTTAGCATAATGCCTCCATATCTTGAA  834

seq1  ACCTCATCATCTACCCACGCAACCTCATTTCCAAATAGCTAGGTAATCAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATCATCTACCCACGCAACCTCATTTCCAAATAGCTAGGTAATCAT  884

seq1  TACTCTTGAAAGACTGGTTCACAGAATCCTTCCTTCACAGGGAGGAGAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTGAAAGACTGGTTCACAGAATCCTTCCTTCACAGGGAGGAGAGC  934

seq1  CTCAGTTAAACCGAATGCATCACGGGTGATAAAAGAGTCTTAACTAGCGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTAAACCGAATGCATCACGGGTGATAAAAGAGTCTTAACTAGCGC  984

seq1  CGTCCTCTCCCTCCTGGCAAACTTGAAGGAGAGAATTCTAAACTAAGAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTCTCCCTCCTGGCAAACTTGAAGGAGAGAATTCTAAACTAAGAAA  1034

seq1  AGGAAGAGCTGGCTTCTCTAAGACAGGAAGGAAGGAAGGAAGGAAGGAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGCTGGCTTCTCTAAGACAGGAAGGAAGGAAGGAAGGAAGGAAG  1084

seq1  GGAGGGAGGGAGGGAGGGAAGCAGGGGAACCAGGGGATAGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGGGAGGGAGGGAAGCAGGGGAACCAGGGGATAGAATTC  1129