BAC Information

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BAC

Clone NameB6Ng01-158L08
Chromosome2 (Build37)9 (Build37)
Map Location 153,069,794 - 153,070,15420,576,853 - 20,577,977
singlet/doubletsingletsinglet
Overlap genePofut1
Upstream geneCsnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2
Downstream geneKif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158L08.bB6Ng01-158L08.g
ACCDH952587DH952588
length9291,111
definitionDH952587|Mus musculus domesticus DNA, BAC clone: B6Ng01-158L08, 5' end.DH952588|Mus musculus domesticus DNA, BAC clone: B6Ng01-158L08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(153,069,794 - 153,070,154)(20,576,853 - 20,577,977)
sequence
gaattcacagagatctatctgtcttagcctggaaattaagaagactaggc
ataaatttctcttttaaagaactgggcagggctggaatgatggctcagtg
gttaagggcactgactgctcttccaaaggtcctgagttcaaatcccagca
accacatggtggctcaaaaccatctgtaatgagatctgatgctctcttct
ggatgacagctgcagtgtacttacatataataaataaataaataaataaa
tctttaaaaaaaagaagaagaactgggcagccaggtgtggtggcgcacat
ctttaatcccagcactcgggaggcagaggcaggcggatttctgagttcga
ggccagcctggtctacaaagtgagttccaggacagccagggctatacaga
gaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
gaactgggcaaaattttgggcaagtccaggcctcagaagctgccccacca
cctggcctgaggcaaggacaatgtcagcaatagtttccagacttcttcag
ctacttcctcagcaacagtttccagacctccccagcaagtttccagcccc
cacaccccagtaatgagatgtctatagagatggatccaatatattaacag
agaggtcacccagcccagaaatccctaatgtgctttaaatcaggcctgca
agctcacttgggtgtctctctgtcttggtactggagagaccccaacatgc
tggacctctgctgaataaaacactcttcgcctttacatactccttgagtc
cagggtgtcattcttcggcgaatcatgagcccttacacctgagtgttggg
ataaaaggcatgtaccatcacacccagggaatagttcgtgactgtggtag
tttgaagaaggctcatatatttgaacatt
gaattcagtgaggccatcacctcctccaggccaccttccagggtgtccgt
cacagatcggcgcctgcgcaggccatgcacctcagccggagaaccctgga
ctcacaagggaatgggaatggaagagaggaagaatcagagatgggcagag
aagacaagacaatgggaggcagagaaattcagaagaggaaggagaggagc
aagaagaggggcggggggcgggagcagagaatgaaagaagagaaagagat
attgagagagtaatgggtaatagatggagacgcagggagggagagacagg
acagaacccagggagagaagctcagatcagactccacaaatggtcccact
gggactgccaaaacccacgaacccagaatgtcttccaagtctcttttggg
tatttgtttgttttgagacagggtctcatgtacccctggctaacctcgaa
ctctctatgtagctgtggataaccttgaactcctggtctcttgtctctgc
ctccccagtgctggactgacaggtgtgtgccaccacccactgcactccac
tcctcccaaagctttcaaggaactgcatttctgagctacagaccgaaaca
ctggactgggttatgagggacctgataagaacacccaagtctgattcctg
ccttcctccagagtctgggaactcaccgggggaccaggaggacccgctgg
tccagggtctccacgaggaccaagagatccctatgagagaggtcactttg
aaatgaatcctgtctatggagacctggttctaccaatgcaaatacatgca
tgtgcacatgcacatacactcacacgcacacacacacacaaacacatgca
cacacatatacctaaacatatagattcacttgcacatatgtgtgtggaca
tacccccacacatatgcacaaacatacatgtgcatacatacacatctgtg
catacatacacccatgtataatacagacatgtacatgcactctctggaga
cctccgaagctttcagacaatccccacactaaaattcccattacagccct
cacttccaggaagcccactctttctgaacgtattctttcttctaaacagt
cctttgaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_153069794_153070154
seq2: B6Ng01-158L08.b_125_498 (reverse)

seq1  -----TCTTTTTTTTTTTTTTTTTTTTTTTTGCTTTTTCGAGACAGGGTT  45
           | ||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTT  50

seq1  TCTCTGTGTAGCCCTGGCTGACCTGGCACTCACTTTGTAGACCAGGCTGG  95
      ||||||| |||||||||||| ||||| |||||||||||||||||||||||
seq2  TCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGG  100

seq1  CCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAA  145
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAA  150

seq1  AGGCGTGCGCCACCACGCCCGGCT------TTTTTTTTTTTTTTTTTAAA  189
      ||  |||||||||||| || ||||      || || || |||||||||||
seq2  AGATGTGCGCCACCACACCTGGCTGCCCAGTTCTTCTTCTTTTTTTTAAA  200

seq1  G--------ATTTATTTATTTATTATATGTAAGTACACTGTGTTTGTCCT  231
      |        |||||||||||||||||||||||||||||||    |||| |
seq2  GATTTATTTATTTATTTATTTATTATATGTAAGTACACTGCAGCTGTCAT  250

seq1  -CAGATACTTCAAGAGGGCATTAGATTTTGTTACGGATGGTTGTGAGCCA  280
       |||       ||||| |||| |||| |  |||| ||||||| |||||||
seq2  CCAG-------AAGAGAGCATCAGATCTCATTACAGATGGTTTTGAGCCA  293

seq1  CCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTTGGC  330
      |||||||||||||||||||||||||||||||||| |||||||||||  | 
seq2  CCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGT  343

seq1  GCTCTTAACCACTGAGCCATCTCGCCAGCCC  361
      || ||||||||||||||||||   |||||||
seq2  GCCCTTAACCACTGAGCCATCATTCCAGCCC  374

seq1: chr9_20576853_20577977
seq2: B6Ng01-158L08.g_67_1177

seq1  GAATTCAGTGAGGCCATCACCTCCTCCAGGCCACCTTCCAGGGTGTCCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAGGCCATCACCTCCTCCAGGCCACCTTCCAGGGTGTCCGT  50

seq1  CACAGATCGGCGCCTGCGCAGGCCATGCACCTCAGCCGGAGAACCCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATCGGCGCCTGCGCAGGCCATGCACCTCAGCCGGAGAACCCTGGA  100

seq1  CTCACAAGGGAATGGGAATGGAAGAGAGGAAGAATCAGAGATGGGCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAGGGAATGGGAATGGAAGAGAGGAAGAATCAGAGATGGGCAGAG  150

seq1  AAGACAAGACAATGGGAGGCAGAGAAATTCAGAAGAGGAAGGAGAGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAGACAATGGGAGGCAGAGAAATTCAGAAGAGGAAGGAGAGGAGC  200

seq1  AAGAAGAGGGGCGGGGGGCGGGAGCAGAGAATGAAAGAAGAGAAAGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAGGGGCGGGGGGCGGGAGCAGAGAATGAAAGAAGAGAAAGAGAT  250

seq1  ATTGAGAGAGTAATGGGTAATAGATGGAGACGCAGGGAGGGAGAGACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAGAGTAATGGGTAATAGATGGAGACGCAGGGAGGGAGAGACAGG  300

seq1  ACAGAACCCAGGGAGAGAAGCTCAGATCAGACTCCACAAATGGTCCCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACCCAGGGAGAGAAGCTCAGATCAGACTCCACAAATGGTCCCACT  350

seq1  GGGACTGCCAAAACCCACGAACCCAGAATGTCTTCCAAGTCTCTTTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGCCAAAACCCACGAACCCAGAATGTCTTCCAAGTCTCTTTTGGG  400

seq1  TATTTGTTTGTTTTGAGACAGGGTCTCATGTACCCCTGGCTAACCTCGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTTGTTTTGAGACAGGGTCTCATGTACCCCTGGCTAACCTCGAA  450

seq1  CTCTCTATGTAGCTGTGGATAACCTTGAACTCCTGGTCTCTTGTCTCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTATGTAGCTGTGGATAACCTTGAACTCCTGGTCTCTTGTCTCTGC  500

seq1  CTCCCCAGTGCTGGACTGACAGGTGTGTGCCACCACCCACTGCACTCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAGTGCTGGACTGACAGGTGTGTGCCACCACCCACTGCACTCCAC  550

seq1  TCCTCCCAAAGCTTTCAAGGAACTGCATTTCTGAGCTACAGACCGAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCAAAGCTTTCAAGGAACTGCATTTCTGAGCTACAGACCGAAACA  600

seq1  CTGGACTGGGTTATGAGGGACCTGATAAGAACACCCAAGTCTGATTCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTGGGTTATGAGGGACCTGATAAGAACACCCAAGTCTGATTCCTG  650

seq1  CCTTCCTCCAGAGTCTGGGAACTCACCGGGGGACCAGGAGGACCCGCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCCAGAGTCTGGGAACTCACCGGGGGACCAGGAGGACCCGCTGG  700

seq1  TCCAGGGTCTCCACGAGGACCAAGAGATCCCTATGAGAGAGGTCACTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGTCTCCACGAGGACCAAGAGATCCCTATGAGAGAGGTCACTTTG  750

seq1  AAATGAATCCTGTCTATGGAGACCTGGTTCTACCAATGCAAATACATGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATCCTGTCTATGGAGACCTGGTTCTACCAATGCAAATACATGCA  800

seq1  TGTGCACATGCACATACACTCACACGCACACACACACACAAACACATGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACATGCACATACACTCACACGCACACACACACACAAACACATGCA  850

seq1  CACACATATACCTAAACATATAGATTCACTTGCACATATGTGTGTGGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATATACCTAAACATATAGATTCACTTGCACATATGTGTGTGGACA  900

seq1  TACCCCCACACATATGCACAAACATACATGTGCATACATACACATCTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCACACATATGCACAAACATACATGTGCATACATACACATCTGTG  950

seq1  CATACATACACCCATGTATACATACAGACATGTACATGCACTCCTCTGGA  1000
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  CATACATACACCCATGTATA-ATACAGACATGTACATGCACT-CTCTGGA  998

seq1  GACCTCCGAAGCCTCCAGACAAATCCCCCACACTAAAATCCCCATTACAG  1050
      |||||||||||| | |||||||   |||||||||||||| ||||||||||
seq2  GACCTCCGAAGCTTTCAGACAA--TCCCCACACTAAAATTCCCATTACAG  1046

seq1  CCCCTCACTTTCCCCAGGACAGCCCCACTCATTCCTGACCCTTATCCTTC  1100
       |||||||||   |||||| || ||||||| || |||| | |  || |||
seq2  -CCCTCACTT---CCAGGA-AG-CCCACTC-TTTCTGAACGTATTCTTTC  1089

seq1  CTCTAAACCAGCCCCCTTTGAACAT  1125
       |||||| |||   |||||||||||
seq2  TTCTAAA-CAG--TCCTTTGAACAT  1111