BAC Information

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BAC

Clone NameB6Ng01-158N11
Chromosome9 (Build37)
Map Location 42,586,838 - 42,750,896
singlet/doubletdoublet
Overlap geneGrik4
Upstream gene6720432D03Rik, Sorl1, Sc5d, Tecta, Tbcel
Downstream geneArhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29, LOC384931, Pvrl1, LOC100042548
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158N11.bB6Ng01-158N11.g
ACCDH952679DH952680
length1,048915
definitionDH952679|Mus musculus domesticus DNA, BAC clone: B6Ng01-158N11, 5' end.DH952680|Mus musculus domesticus DNA, BAC clone: B6Ng01-158N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,749,853 - 42,750,896)(42,586,838 - 42,587,749)
sequence
gaattccgccgggcctcttcaggctggctttctttgcggaggccgtggct
catgcttcatcgttaatcaggtttattattttcctcactggctggatgta
ttcctcaaggtcgtgaccctttagagagttaatctaatatgcacacgtta
cagtgtctgggtttgtttaattttccagattatgttcatttcttgtggcc
tgggcttgcccaccagccttgcgtcagtctccagcgccaccctctgtttt
cctggacctgccacttgagacctgaaggcagggttggttctagcagtggg
ggacagagtgggtttgatggacggggggagttgggctttcatgttttccc
tttctccaatagacatctcaatcttgacggaagctttctcagctctgaaa
gtttgttctaaagccttccagtctgggctcccttagaatgcagagagaac
ttttgcatgacagagggaagtgcattttttctggaggagctgcagctgct
ctctagagacttcagttcccagagataggaagagggtaagcaggcctggg
tgagccagaaagcccagtgcccaacaggaagccagagtcactgacgagga
gggtagctgtgctgtgctttgtgcctggaagaggcgtgttggtcctacca
cagagtacttgtcccttctgagtgacagccttctgcaggcctctggatgc
tgcacagccggcccacttcatcctcagtagcctttgctgtgtctgccagc
agccaattggttggcccacaggaactgaagctcagagaactatacttgcc
ccagcagactctggttcgtagtccagtgctcttgctctgggctgcccgga
aagctcctcccagctttatgcttcccgttcacccttttaataatggaatc
tcccagcatcagtgtagatgaccacttttgtctccagaagctggtcccta
tctagaaactcttctcaatccgtgggctacagatacagaaccacaggctt
ttgcttagcaccgaatggccctctcgtatgttggtctcgggcatcatg
gaattccatacccctaagccccttaccccataaaaatccctagctttcaa
gcctcgtggccgacatccgttatctcctgtgtgggatacatgtcggtctg
gagctctgtaattaaacgtcctcatgtaattacatcaagagatggtcctt
cgtgattttttgggtgcacgccgaatcgggaattgggtgggggtttcccc
actaggttctttcagaggtcacagtacacgaagagtggaggtggcgaggt
ggcttggcttgcagccactgtttgtgccccactccttcgggctgtcctca
agcttcctctgactgatgatgcccaactctctcacagcccagaaactgcc
tcctgctccagacctctccatcaacagcctgttgctgtcttgttgaaaca
ttcatgggaagctgtggcagtcatcatagctacactcacccgtggtgccc
cgctctgtgaccggcctcagtgcagagccattccagcagccaggggcagc
gccagagattacagaagggcatgagagtaccgaggcagagacagggaaga
tcctggccaccttgttggcctcataaatacactgcttctccttagcgccc
atatcccatgggggtactaaaagacaagaaggaagcccctcctgacccag
actcaggatcatccaacgggggctgaccttcctgtcaacacaatgaccaa
ttctctgctattgcaagagccagaggaccctccatccagctcctctccct
tcctccacccactccacggcttcttcacctcttcctctgtgagcgttgga
ggtacgaggctttcttacatatttctgtgactaaggaagttcccaacaca
tgttatggctcacacaacagacgtttattgaagctatcagtgggtggatg
aagtgggtggtggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_42749853_42750896
seq2: B6Ng01-158N11.b_49_1096 (reverse)

seq1  CATGATG-CCGGGACCCACATAC-AGAGGGCCA-TCAGTGCTAAGCAAAA  47
      ||||||| ||| |||| |||||| ||||||||| || |||||||||||||
seq2  CATGATGCCCGAGACCAACATACGAGAGGGCCATTCGGTGCTAAGCAAAA  50

seq1  GCCTGT-GTTCTGTATCCTGTAGCCCACGGA-TGAGGAGGGTGTCTGAGA  95
      |||||| ||||||||| |||||||||||||| |||| || || ||| |||
seq2  GCCTGTGGTTCTGTAT-CTGTAGCCCACGGATTGAGAAGAGTTTCT-AGA  98

seq1  TAGGGACCCGC-TCTGGAGACCAAAGTGGTCATCTACACTGATGCTGGGA  144
      |||||||| || ||||||||| ||||||||||||||||||||||||||||
seq2  TAGGGACCAGCTTCTGGAGACAAAAGTGGTCATCTACACTGATGCTGGGA  148

seq1  GATTCCATTAATAAAAGGGTGAACGGGAAGCAT-AAGCTGGGAGGGGCTT  193
      |||||||||| |||||||||||||||||||||| ||||||||||| ||||
seq2  GATTCCATTATTAAAAGGGTGAACGGGAAGCATAAAGCTGGGAGGAGCTT  198

seq1  TCCGGGCAGCCCAGAGCAAGAGCACTGGACTACGAACCAGAGTCTGCTGG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGCAGCCCAGAGCAAGAGCACTGGACTACGAACCAGAGTCTGCTGG  248

seq1  GGCAAGTATAGTTCTCTGAGCTTCAGTTCCTGTGGGCCAACCAATTTGGC  293
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGCAAGTATAGTTCTCTGAGCTTCAGTTCCTGTGGGCCAACCAA-TTGGC  297

seq1  TGCTGGCAGACACAGCAAAGGCTACTGAGGATGAAGTGGGCCGGCTGTGC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCAGACACAGCAAAGGCTACTGAGGATGAAGTGGGCCGGCTGTGC  347

seq1  AGCATCCAGAGGCCTGCAGAAGGCTGTCACTCAGAAGGGACAAGTACTCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCAGAGGCCTGCAGAAGGCTGTCACTCAGAAGGGACAAGTACTCT  397

seq1  GTGGTAGGACCAACACGCCTCTTCCAGGCACAAAGCACAGCACAGCTACC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGGACCAACACGCCTCTTCCAGGCACAAAGCACAGCACAGCTACC  447

seq1  CTCCTCGTCAGTGACTCTGGCTTCCTGTTGGGCACTGGGCTTTCTGGCTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCGTCAGTGACTCTGGCTTCCTGTTGGGCACTGGGCTTTCTGGCTC  497

seq1  ACCCAGGCCTGCTTACCCTCTTCCTATCTCTGGGAACTGAAGTCTCTAGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGCCTGCTTACCCTCTTCCTATCTCTGGGAACTGAAGTCTCTAGA  547

seq1  GAGCAGCTGCAGCTCCTCCAGAAAAAATGCACTTCCCTCTGTCATGCAAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCTGCAGCTCCTCCAGAAAAAATGCACTTCCCTCTGTCATGCAAA  597

seq1  AGTTCTCTCTGCATTCTAAGGGAGCCCAGACTGGAAGGCTTTAGAACAAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCTCTGCATTCTAAGGGAGCCCAGACTGGAAGGCTTTAGAACAAA  647

seq1  CTTTCAGAGCTGAGAAAGCTTCCGTCAAGATTGAGATGTCTATTGGAGAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGAGCTGAGAAAGCTTCCGTCAAGATTGAGATGTCTATTGGAGAA  697

seq1  AGGGAAAACATGAAAGCCCAACTCCCCCCGTCCATCAAACCCACTCTGTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAACATGAAAGCCCAACTCCCCCCGTCCATCAAACCCACTCTGTC  747

seq1  CCCCACTGCTAGAACCAACCCTGCCTTCAGGTCTCAAGTGGCAGGTCCAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTGCTAGAACCAACCCTGCCTTCAGGTCTCAAGTGGCAGGTCCAG  797

seq1  GAAAACAGAGGGTGGCGCTGGAGACTGACGCAAGGCTGGTGGGCAAGCCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGAGGGTGGCGCTGGAGACTGACGCAAGGCTGGTGGGCAAGCCC  847

seq1  AGGCCACAAGAAATGAACATAATCTGGAAAATTAAACAAACCCAGACACT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACAAGAAATGAACATAATCTGGAAAATTAAACAAACCCAGACACT  897

seq1  GTAACGTGTGCATATTAGATTAACTCTCTAAAGGGTCACGACCTTGAGGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACGTGTGCATATTAGATTAACTCTCTAAAGGGTCACGACCTTGAGGA  947

seq1  ATACATCCAGCCAGTGAGGAAAATAATAAACCTGATTAACGATGAAGCAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCCAGCCAGTGAGGAAAATAATAAACCTGATTAACGATGAAGCAT  997

seq1  GAGCCACGGCCTCCGCAAAGAAAGCCAGCCTGAAGAGGCCCGGCGGAATT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACGGCCTCCGCAAAGAAAGCCAGCCTGAAGAGGCCCGGCGGAATT  1047

seq1  C  1044
      |
seq2  C  1048

seq1: chr9_42586838_42587749
seq2: B6Ng01-158N11.g_67_981

seq1  GAATTCCATACCCCTAAGCCCCTTACCCCATAAAAATCCCTAGCTTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACCCCTAAGCCCCTTACCCCATAAAAATCCCTAGCTTTCAA  50

seq1  GCCTCGTGGCCGACATCCGTTATCTCCTGTGTGGGATACATGTCGGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGTGGCCGACATCCGTTATCTCCTGTGTGGGATACATGTCGGTCTG  100

seq1  GAGCTCTGTAATTAAACGTCCTCATGTAATTACATCAAGAGATGGTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTGTAATTAAACGTCCTCATGTAATTACATCAAGAGATGGTCCTT  150

seq1  CGTGATTTTTTGGGTGCACGCCGAATCGGGAATTGGGTGGGGGTTTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATTTTTTGGGTGCACGCCGAATCGGGAATTGGGTGGGGGTTTCCCC  200

seq1  ACTAGGTTCTTTCAGAGGTCACAGTACACGAAGAGTGGAGGTGGCGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTTCTTTCAGAGGTCACAGTACACGAAGAGTGGAGGTGGCGAGGT  250

seq1  GGCTTGGCTTGCAGCCACTGTTTGTGCCCCACTCCTTCGGGCTGTCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGCTTGCAGCCACTGTTTGTGCCCCACTCCTTCGGGCTGTCCTCA  300

seq1  AGCTTCCTCTGACTGATGATGCCCAACTCTCTCACAGCCCAGAAACTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCTCTGACTGATGATGCCCAACTCTCTCACAGCCCAGAAACTGCC  350

seq1  TCCTGCTCCAGACCTCTCCATCAACAGCCTGTTGCTGTCTTGTTGAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCCAGACCTCTCCATCAACAGCCTGTTGCTGTCTTGTTGAAACA  400

seq1  TTCATGGGAAGCTGTGGCAGTCATCATAGCTACACTCACCCGTGGTGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGGAAGCTGTGGCAGTCATCATAGCTACACTCACCCGTGGTGCCC  450

seq1  CGCTCTGTGACCGGCCTCAGTGCAGAGCCATTCCAGCAGCCAGGGGCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTGTGACCGGCCTCAGTGCAGAGCCATTCCAGCAGCCAGGGGCAGC  500

seq1  GCCAGAGATTACAGAAGGGCATGAGAGTACCGAGGCAGAGACAGGGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGATTACAGAAGGGCATGAGAGTACCGAGGCAGAGACAGGGAAGA  550

seq1  TCCTGGCCACCTTGTTGGCCTCATAAATACACTGCTTCTCCTTAGCGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCCACCTTGTTGGCCTCATAAATACACTGCTTCTCCTTAGCGCCC  600

seq1  ATATCCCATGGGGGTACT-AAAGACAAGAAGGAAGCCCCTCCTGACCCAG  649
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATATCCCATGGGGGTACTAAAAGACAAGAAGGAAGCCCCTCCTGACCCAG  650

seq1  ACTCAGGATCATCCAACGGGGGCTGACCTTCCTGTCAACACAATGACCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGATCATCCAACGGGGGCTGACCTTCCTGTCAACACAATGACCAA  700

seq1  TTCTCTGCTATTGCAAGAGCCAGAGGACCCTCCATCCAGCTCCTCTCCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCTATTGCAAGAGCCAGAGGACCCTCCATCCAGCTCCTCTCCCT  750

seq1  TCCTCCACCCACTCCACGGCTTCTTCACCTC-TCCTCTGTGAGCGTTGGA  798
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCTCCACCCACTCCACGGCTTCTTCACCTCTTCCTCTGTGAGCGTTGGA  800

seq1  GGTACGAGGCTTTCTTACATATTTCTGTGACCAAGGAAGTTCCCAACACA  848
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGTACGAGGCTTTCTTACATATTTCTGTGACTAAGGAAGTTCCCAACACA  850

seq1  TGTTATGGCTCACACAACAGACGTTTATTGAAGCTATCAGTGGGTGGATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGGCTCACACAACAGACGTTTATTGAAGCTATCAGTGGGTGGATG  900

seq1  -AGTGGGTGGTGGAT  912
       ||||||||||||||
seq2  AAGTGGGTGGTGGAT  915