BAC Information

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BAC

Clone NameB6Ng01-159A20
Chromosome9 (Build37)
Map Location 107,945,525 - 108,128,900
singlet/doubletdoublet
Overlap geneIhpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1
Upstream geneDock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik
Downstream geneNicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159A20.bB6Ng01-159A20.g
ACCDH952831DH952832
length827766
definitionDH952831|Mus musculus domesticus DNA, BAC clone: B6Ng01-159A20, 5' end.DH952832|Mus musculus domesticus DNA, BAC clone: B6Ng01-159A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,128,060 - 108,128,900)(107,945,525 - 107,946,289)
sequence
gaattcaaggaatgcaaaaaaaaagaaaaaaaggaagaaaagaaaagctt
ttttgttgtaaaaccagacaggagtgatgatttatgcttgtattcccagt
gcttgggagatagatacaggaggatcaagagttcaaagccattctttgct
tcatagcaagtttgaggctccataagttacaagaaatgctgccctaaaac
caaatagacaaaatatagaaatccccctttcaaacccacttccctagaaa
caaacaacatagacacctgctaccctctagcctgggcctacccccagttt
tacccaagaggtcttcagagtcagctttgagttccccctgaaggctcttc
cagctgctctctctccccttccaagtagggaagtagacctttaacttgtg
catgctgagcaaatgctgtacctcaaagctacatcccattccaccccaat
tcacactttcttattcataagtaggagtaagttcttaatactgaaaagta
tagtaactatataagccagcaagctgctcctttttaaatgtactgtacta
tatataattctatatgccctactgtatttgactagcagcctagtagttta
cccagtggccacagtgtgagtgctaccttgtattgtgtagcatcagactt
ttagctttattgtaattttatatggcactatcataaatgtgcttctaaaa
caatggtttgagccttgtgactatttaggtagtggaatactgtttgtgtt
ttggggatggatgcaataaaggtcttaattgaaagaaattgaaattggaa
gactgcctcagaattggaagctctcac
gaattctctgtctctctctctctctctcttgtctttctctcatcctggtt
atcctggaactcactatgtagaccttgctggcaatctaggaattgaatcc
aaaagcaacaagtgttctaaactgctcagctacttctccagctccaagga
ataagattgtgatatattttatgatttgggtgaatcttgaaatcatttta
ctaggcctgaaataaaaggattaatgctggaaatatccagtaaagtgagc
cgcctccagtagacagatttctagacacagggtagaggtctcctgaagct
cgccctcagtgggcggagcttcagcgtagggaggtggactgaagcctgat
gggcatgcttgtgtggtgaaagggcagttcccttctgcttgctttcctgg
aggtaggcactctccagcccaggctgacctcacagaggtctgcatgcctc
tgcctctagaatgctgctgttaaaggtgtgtgccacagtgcccagtccca
tttttaatttaatttttgtactttggagacaggatttgaatatgtagttc
taagctagcctacaactcactatatgtagaacaggctggcttcagaccta
cagagatctacctgcctgtcttgtgtgggtatgagtgctgggataaaggt
tgtgtgccaccaactacgggctctaagattttatgggatagatattccaa
aattttgttaaagtcagtgatttgaaactgccgtttaagaacttgtgagg
gggcaggcagtggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_108128060_108128900
seq2: B6Ng01-159A20.b_49_875 (reverse)

seq1  GTGAG-GCTTCAATTACTGA-GCAGTCTTTCTAAATTTCATATTCTATTC  48
      ||||| ||||| | | |||| |||||||| |  |||||||  |||| |||
seq2  GTGAGAGCTTCCAATTCTGAGGCAGTCTTCC--AATTTCAATTTCT-TTC  47

seq1  AATTAAGA-CTTTATATGCATTACCAAATCACAAAACACAAACAGTAATC  97
      |||||||| |||||| |||||   | |  | |||||||||||||||| ||
seq2  AATTAAGACCTTTAT-TGCAT---CCATCCCCAAAACACAAACAGTATTC  93

seq1  CACTTAACTAGATAGTCACAAGGCTCATACCAATGTTCTAG-AGCACATT  146
      ||| || ||| |||||||||||||||| |||| |||| ||| ||||||||
seq2  CAC-TACCTAAATAGTCACAAGGCTCAAACCATTGTTTTAGAAGCACATT  142

seq1  TATGATAGTGGCCATATAAAATTACAATAAAGCTAAAAAGTTCCTGATGC  196
      ||||||||| |||||||||||||||||||||||| ||||||  |||||| 
seq2  TATGATAGT-GCCATATAAAATTACAATAAAGCT-AAAAGT--CTGATG-  187

seq1  CTAACCACAATACAAGGTAGCACTCACACTGTGGCCACTGGGTAAAACCT  246
      |||  |||||||||||||||||||||||||||||||||||||||||  ||
seq2  CTA--CACAATACAAGGTAGCACTCACACTGTGGCCACTGGGTAAA--CT  233

seq1  ACTAGGCTGCTAGTCAAATAACAGTAGGGCATATAGAATTATATATAGTA  296
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTAGGCTGCTAGTCAAAT-ACAGTAGGGCATATAGAATTATATATAGTA  282

seq1  CAGTACATTTAAAAAGGAGCAGCTTGCTGGCTTATATAGTTACTATACTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACATTTAAAAAGGAGCAGCTTGCTGGCTTATATAGTTACTATACTT  332

seq1  TTCAGTATTAAGAACTTACTCCTACTTATGAATAAGAAAGTGTGAATTGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTATTAAGAACTTACTCCTACTTATGAATAAGAAAGTGTGAATTGG  382

seq1  GGTGGAATGGGATGTAGCTTTGAGGTACAGCATTTGCTCAGCATGCACAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAATGGGATGTAGCTTTGAGGTACAGCATTTGCTCAGCATGCACAA  432

seq1  GTTAAAGGTCTACTTCCCTACTTGGAAGGGGAGAGAGAGCAGCTGGAAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGGTCTACTTCCCTACTTGGAAGGGGAGAGAGAGCAGCTGGAAGA  482

seq1  GCCTTCAGGGGGAACTCAAAGCTGACTCTGAAGACCTCTTGGGTAAAACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAGGGGGAACTCAAAGCTGACTCTGAAGACCTCTTGGGTAAAACT  532

seq1  GGGGGTAGGCCCAGGCTAGAGGGTAGCAGGTGTCTATGTTGTTTGTTTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTAGGCCCAGGCTAGAGGGTAGCAGGTGTCTATGTTGTTTGTTTCT  582

seq1  AGGGAAGTGGGTTTGAAAGGGGGATTTCTATATTTTGTCTATTTGGTTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTGGGTTTGAAAGGGGGATTTCTATATTTTGTCTATTTGGTTTT  632

seq1  AGGGCAGCATTTCTTGTAACTTATGGAGCCTCAAACTTGCTATGAAGCAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGCATTTCTTGTAACTTATGGAGCCTCAAACTTGCTATGAAGCAA  682

seq1  AGAATGGCTTTGAACTCTTGATCCTCCTGTATCTATCTCCCAAGCACTGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGCTTTGAACTCTTGATCCTCCTGTATCTATCTCCCAAGCACTGG  732

seq1  GAATACAAGCATAAATCATCACTCCTGTCTGGTTTTACAACAAAAAAGCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAAGCATAAATCATCACTCCTGTCTGGTTTTACAACAAAAAAGCT  782

seq1  TTTCTTTTCTTCCTTTTTTTCTTTTTTTTTGCATTCCTTGAATTC  841
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCTTCCTTTTTTTCTTTTTTTTTGCATTCCTTGAATTC  827

seq1: chr9_107945525_107946289
seq2: B6Ng01-159A20.g_66_831

seq1  GAATTCTCTGTCTCTCTCTCTCTCTCTCTTGTCTTTCTCTCATCCTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTCTCTCTCTCTCTCTCTCTTGTCTTTCTCTCATCCTGGTT  50

seq1  ATCCTGGAACTCACTATGTAGACCTTGCTGGCAATCTAGGAATTGAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGAACTCACTATGTAGACCTTGCTGGCAATCTAGGAATTGAATCC  100

seq1  AAAAGCAACAAGTGTTCTAAACTGCTCAGCTACTTCTCCAGCTCCAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAACAAGTGTTCTAAACTGCTCAGCTACTTCTCCAGCTCCAAGGA  150

seq1  ATAAGATTGTGATATATTTTATGATTTGGGTGAATCTTGAAATCATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATTGTGATATATTTTATGATTTGGGTGAATCTTGAAATCATTTTA  200

seq1  CTAGGCCTGAAATAAAAGGATTAATGCTGGAAATATCCAGTAAAGTGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCTGAAATAAAAGGATTAATGCTGGAAATATCCAGTAAAGTGAGC  250

seq1  CGCCTCCAGTAGACAGATTTCTAGACACAGGGTAGAGGTCTCCTGAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCCAGTAGACAGATTTCTAGACACAGGGTAGAGGTCTCCTGAAGCT  300

seq1  CGCCCTCAGTGGGCGGAGCTTCAGCGTAGGGAGGTGGACTGAAGCCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCTCAGTGGGCGGAGCTTCAGCGTAGGGAGGTGGACTGAAGCCTGAT  350

seq1  GGGCATGCTTGTGTGGTGAAAGGGCAGTTCCCTTCTGCTTGCTTTCCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGCTTGTGTGGTGAAAGGGCAGTTCCCTTCTGCTTGCTTTCCTGG  400

seq1  AGGTAGGCACTCTCCAGCCCAGGCTGACCTCACAGAGGTCTGCATGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGCACTCTCCAGCCCAGGCTGACCTCACAGAGGTCTGCATGCCTC  450

seq1  TGCCTCTAGAATGCTGCTGTTAAAGGTGTGTGCCACAGTGCCCAGTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTAGAATGCTGCTGTTAAAGGTGTGTGCCACAGTGCCCAGTCCCA  500

seq1  TTTTTAATTTAATTTTTGTACTTTGGAGACAGGATTTGAATATGTAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTTAATTTTTGTACTTTGGAGACAGGATTTGAATATGTAGTTC  550

seq1  TAAGCTAGCCTACAACTCACTATATGTAGAACAGGCTGGCTTCAGACCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAGCCTACAACTCACTATATGTAGAACAGGCTGGCTTCAGACCTA  600

seq1  CAGAGATCTACCTGCCTGTCTTGTGTGGGTATGAGTGCTGGGATAAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATCTACCTGCCTGTCTTGTGTGGGTATGAGTGCTGGGATAAAGGT  650

seq1  TGTGTGCCACCAACTACGGGCTCTAAGATTTTATGGGATAGATATTCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCACCAACTACGGGCTCTAAGATTTTATGGGATAGATATTCCAA  700

seq1  AA-TTTGTTAAAGTCAGTGATTTGAAACTGCCGTTTAAGAACTTGTGAGG  749
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTTAAAGTCAGTGATTTGAAACTGCCGTTTAAGAACTTGTGAGG  750

seq1  GGGCAGGCAGTGGTGG  765
      ||||||||||||||||
seq2  GGGCAGGCAGTGGTGG  766