BAC Information

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BAC

Clone NameB6Ng01-159B13
Chromosome9 (Build37)8 (Build37)
Map Location 100,101,826 - 100,101,993105,373,365 - 105,374,463
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik
Downstream geneLOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486, Stag1, LOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159B13.bB6Ng01-159B13.g
ACCDH952863DH952864
length3481,073
definitionDH952863|Mus musculus domesticus DNA, BAC clone: B6Ng01-159B13, 5' end.DH952864|Mus musculus domesticus DNA, BAC clone: B6Ng01-159B13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(100,101,826 - 100,101,993)(105,373,365 - 105,374,463)
sequence
acaggctagcaatccagattacagtcattttattttcatggagaattatt
ctttctcccccctcccccatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtatgtgtatgtgcatccgtgcacatgaaagccaaaga
ttgacatcagatgtctttctctattactcttcttatattttgaggcaggt
cttctgctgaatacatgcagctcaaatgtttctgcttgtctgtctaatga
ggtatctttgaagtttccctgtctccatctcttgtgtgcaggggttaccg
ttggctgccatacctgcagcctcgttattttaatttttattgcatatg
gaattccataaatggaattacatcctatttccaatttctggttcacatgg
catttacagttatctaccattccttaagatattgtagagtttttcctttg
tactaggctttccaagaaaatttcctgcttcatataaatacttaatagac
agaaatctttcctgggaaactgctaaagataacatgattttaggttataa
attaaaagattactaaaattcacagacattctatgtctaggaatgtttgt
taatttgagacccccctctctccatgtttatctttaatctcccaaccagc
tgtctcccataaaaagatatttctgtttttagttacaaatctgttataaa
gataaaactcactcataaacacacaactgcatgcagacttttttttttct
gctgaccttatagaagtatatccagatgaaaaatattaagtttgtttaga
aatagaaactgcattcttctggccttgatggagaccctatgttcatagat
tttcaaggactctctgtacctctctctgagcctctgaggaagaacacagt
cttctgttacatttatgttttagtcccatcgcaagtaagcaaaaggcttt
ggaacattctgatttcaggaattagtttctatcgggtactttttgaattt
agcaattaactcttcgttaaggcaggtagcagttgcatagagaaaacaaa
gaaatccaagcatccagtgaatagcacacatttcctaggtagtgattaac
tagctcatatcactgtttactgttctccttgggtggtgggatccttacta
tacaatgtgttggatgatgttgtatagtccttcttttgttcccctaaaac
ctagtgttgtacatataataaatagttaattatgccaaacatagttactg
gcaataaattgctatgatagatgtattcagtatttacaaaaagaaaatat
tgtagattcccgagttcttgtgggacttagatgtatctctggtctacctc
accagtctgttgagtaaatgtgggctttaaggcctttttttttatgcgca
ttttccccagaaacataggtaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_100101826_100101993
seq2: B6Ng01-159B13.b_88_173

seq1  TTCATGGAGAATTATTTCTCTATGTTATCTTGATTCATCACATGGATAAA  50
      |||||||||||||||            ||||                   
seq2  TTCATGGAGAATTAT------------TCTT-------------------  19

seq1  ACTCAGTCTGTCACAGTGAAATGTGAACAAGACAATGGTCTGAGATCCAA  100
            |||  | |                               |||  
seq2  ------TCTCCCCC------------------------------CTCC--  31

seq1  ACCTGTTTCTGCATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  150
       ||        ||    |||||||||||||||||||||||||||||||||
seq2  -CC--------CA----TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  68

seq1  GTGTGTGTGTGTATGTGT  168
      ||||||||||||||||||
seq2  GTGTGTGTGTGTATGTGT  86

seq1: chr8_105373365_105374463
seq2: B6Ng01-159B13.g_66_1138

seq1  GAATTCCATAAATGGAATTACATCCTATTTCCAATTTCTGGTTCACATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAATGGAATTACATCCTATTTCCAATTTCTGGTTCACATGG  50

seq1  CATTTACAGTTATCTACCATTCCTTAAGATATTGTAGAGTTTTTCCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACAGTTATCTACCATTCCTTAAGATATTGTAGAGTTTTTCCTTTG  100

seq1  TACTAGGCTTTCCAAGAAAATTTCCTGCTTCATATAAATACTTAATAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGGCTTTCCAAGAAAATTTCCTGCTTCATATAAATACTTAATAGAC  150

seq1  AGAAATCTTTCCTGGGAAACTGCTAAAGATAACATGATTTTAGGTTATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTTTCCTGGGAAACTGCTAAAGATAACATGATTTTAGGTTATAA  200

seq1  ATTAAAAGATTACTAAAATTCACAGACATTCTATGTCTAGGAATGTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGATTACTAAAATTCACAGACATTCTATGTCTAGGAATGTTTGT  250

seq1  TAATTTGAGACCCCCCTCTCTCCATGTTTATCTTTAATCTCCCAACCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGAGACCCCCCTCTCTCCATGTTTATCTTTAATCTCCCAACCAGC  300

seq1  TGTCTCCCATAAAAAGATATTTCTGTTTTTAGTTACAAATCTGTTATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCCATAAAAAGATATTTCTGTTTTTAGTTACAAATCTGTTATAAA  350

seq1  GATAAAACTCACTCATAAACACACAACTGCATGCAGACTTTTTTTTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAACTCACTCATAAACACACAACTGCATGCAGACTTTTTTTTTTCT  400

seq1  GCTGACCTTATAGAAGTATATCCAGATGAAAAATATTAAGTTTGTTTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCTTATAGAAGTATATCCAGATGAAAAATATTAAGTTTGTTTAGA  450

seq1  AATAGAAACTGCATTCTTCTGGCCTTGATGGAGACCCTATGTTCATAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAACTGCATTCTTCTGGCCTTGATGGAGACCCTATGTTCATAGAT  500

seq1  TTTCAAGGACTCTCTGTACCTCTCTCTGAGCCTCTGAGGAAGAACACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGACTCTCTGTACCTCTCTCTGAGCCTCTGAGGAAGAACACAGT  550

seq1  CTTCTGTTACATTTATGTTTTAGTCCCATCGCAAGTAAGCAAAAGGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTACATTTATGTTTTAGTCCCATCGCAAGTAAGCAAAAGGCTTT  600

seq1  GGAACATTCTGATTTCAGGAATTAGTTTCTATCGGGTACTTTTTGAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATTCTGATTTCAGGAATTAGTTTCTATCGGGTACTTTTTGAATTT  650

seq1  AGCAATTAACTCTTCGTTAAGGCAGGTAGCAGTTGCATAGAGAAAACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTAACTCTTCGTTAAGGCAGGTAGCAGTTGCATAGAGAAAACAAA  700

seq1  GAAATCCAAGCATCCAGTGAATAGCACACATTTCCTAGGTAGTGATTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCAAGCATCCAGTGAATAGCACACATTTCCTAGGTAGTGATTAAC  750

seq1  TAGCTCATATCACTGTTTACTGTTCTCCTTGGGTGGTGGGATCCTTACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCATATCACTGTTTACTGTTCTCCTTGGGTGGTGGGATCCTTACTA  800

seq1  TACAATGTGTTGGATGATGTTGTATAGTCCTTCTTTTGTTCCCCTAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGTGTTGGATGATGTTGTATAGTCCTTCTTTTGTTCCCCTAAAAC  850

seq1  CTAGTGTTGTACATATAATAAAATAGTTAATTAATGCCAAAACATAGTTA  900
      ||||||||||||||||||| |||||||||||| ||||| |||||||||||
seq2  CTAGTGTTGTACATATAAT-AAATAGTTAATT-ATGCC-AAACATAGTTA  897

seq1  CTGGCAATTAAATTGCTATGATAGATGTTATTCAGTTAATTTTACAAAAA  950
      ||||||| ||||||||||||||||||| ||||||||    ||||||||||
seq2  CTGGCAA-TAAATTGCTATGATAGATG-TATTCAGT---ATTTACAAAAA  942

seq1  GAAAATATTGTAGAATTTCCCGAGTTCTTTGTGGGACTTAGATTGTTATT  1000
      ||||||||||||||  ||||||||||| ||||||||||||||       |
seq2  GAAAATATTGTAGA--TTCCCGAGTTC-TTGTGGGACTTAGA-------T  982

seq1  CTTTCTTGTGTCTACCTCACCAGTTCTGTTGAGGTAAAATGTGGCTTTTT  1050
       | |||   |||||||||||||| |||||||||   ||||||||   |||
seq2  GTATCTCTGGTCTACCTCACCAG-TCTGTTGAG--TAAATGTGG-GCTTT  1028

seq1  CAGGTCTTTTTTTTTTTCATGCATTTTTTCCCCCAGAAACAATGGTAAC  1099
       ||| ||||||||||   ||||   |||| |||||||||||  ||||||
seq2  AAGGCCTTTTTTTTT---ATGCGCATTTT-CCCCAGAAACATAGGTAAC  1073