BAC Information

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BAC

Clone NameB6Ng01-159B20
Chromosome3 (Build37)9 (Build37)
Map Location 41,059,224 - 41,059,73759,914,472 - 59,915,966
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159B20.bB6Ng01-159B20.g
ACCDH952875DH952876
length9981,041
definitionDH952875|Mus musculus domesticus DNA, BAC clone: B6Ng01-159B20, 5' end.DH952876|Mus musculus domesticus DNA, BAC clone: B6Ng01-159B20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,224 - 41,059,737)(59,914,472 - 59,915,966)
sequence
gaattctttgtttagctctgagcctcattttttaatggggttatttgttt
ttctggagtccacctttttgagttctttatatatatattggatatcagtc
ccctatttgatttaggataggtaaagatcctttcccaatctgttggtggt
ctttttgtcttattgatggtatcttttgccttgcagaagctttgcaattt
tatgaggtcccatttgtcgattcccgatcttatagcacaagccattgctg
ttctattcaggaatttttcccctgtacccatatctttgaggcttttccct
actttctcctctataagtttcagtgtctctggttttatgtggagttcctt
aatccacttagatttgaccttagtacaaggagataggaatggatcaattc
gcattcttctacatgataaccgccagttgtgccagcaccatttgttgaaa
atgctgtttttttccactggatggttttttctcccttgtcaaagatcaaa
tgaccataggtgtgtgggttcatttctgggtcttcaattctattccattg
gtctacttgtctattgctataccagtaccatgcagttgttatcacaattg
ctctgtagtaaagctttaggtcaggcatggtgattccaccagaggttctt
ttatccttgagaagagtttttgctatcctaggttttttgttgttccagtt
gaatttgcagattgccctttctacttcgttgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
tttactatattgatcttgccaatccatgagcatgggagatctttccatct
tctgagatcttctttaatttctttcttcagagacttgaagttcttatcat
acagatctttcacttccttaattagagtcacgccaaggtattttatatta
tttgtgctatgagaggtgttgtttccctaattctttctcagcctgttt
gaattctccttcaatgctgtcattttacaggtggcaatgtcacccgtggc
tgtgtgatatcatgagactgttcttaggcttgcagccagggatctagaga
aagactccccaaagtacagccccactgaggagatttcttcagattatgga
attagagaggggctaggacctaaagcccaaactcttaaggcaggtagata
ggtacgaagaaggaggacaccatggtgtcatgagaaggaggctgtaggca
ggaagccctcacccagccaacttggagaagtcccttcacttcctgggact
tggtttctttgtctgtagagaagggggctgactccagatctgtcagtgct
tttgaggacctggcttctcaggaggatgagatttcaaacatgtcctctct
ccacctttaccactattataaatatcacagccagaaggaagctttccaga
ggcattttgttttccatttgaagccaaagagtgttcatgttgtgttgtct
tagttttgactggatagagacttggttgtcatttagagggccaggatgca
acttgagtaaagacggaagagtgtacagtaaacagaaagtgacctaacag
gtcaaatgatcccagacggcagcaggagaaacctgtgagaaatcacaaat
ctccttacatcctgcttattgacctgaaaatgcatagagcaagttggtct
aggccgatggcagatgcgaccggcggcaggtgccagctctgttcactagt
gcatgggcaacctgggcaagttccaaaatctcctgagagctgggcctcac
tagagttggttgctgtaggaattcaacatcatgagggaaacactccctga
agcctttcagaacatagacgctgtcagtagggagcaccgaaatgattcac
acagctgatttgtggacgcttatgctacagcatctatgtaatagtcgttg
tttctcttcgtctctcagactcacatagcaagcaaaatggtatgaggaca
gagaacaagaagcgtgcctggagcatgacacttgcagactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059737
seq2: B6Ng01-159B20.b_45_560 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      ||||||||||||||||| |||||||| ||||||||||  |||||||||||
seq2  CCACACACCTATGGTCATTTGATCTTTGACAAGGGAGAAAAAACCATCCA  50

seq1  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGT  100
      |||||||||| |||||||||||||||||||||||||||||||||||  ||
seq2  GTGGAAAAAA-ACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCGGT  99

seq1  TATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAG  150
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TATCATGTAGAAGAATGCGAATTGATCCATTCCTATCTCCTTGTACTAAG  149

seq1  GTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAA  200
      ||||||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  GTCAAATCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGACACTGAA  199

seq1  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGG  250
      |||||||||||||||||| |||||||||||  |||||||||  |||||||
seq2  ACTTATAGAGGAGAAAGTAGGGAAAAGCCTCAAAGATATGGGTACAGGGG  249

seq1  AAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATA  300
      ||||||||||| ||||||||||||||||||||||| |||||| | |||| 
seq2  AAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTATAAGATCGGGAATC  299

seq1  GACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACAC  350
      ||||||||||||||||| ||| ||||||||||||||||||||||||| ||
seq2  GACAAATGGGACCTCATAAAATTGCAAAGCTTCTGCAAGGCAAAAGATAC  349

seq1  CGTCAATAAGACAAAAAG-GCACCAACAGATTGGGAAAGGATCTTTACCT  399
      | ||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  CATCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCT  399

seq1  ATCCTAAATCAGATAGGGGACTAATATCCA--ATATATATCAAGAACTCA  447
      ||||||||||| |||||||||| |||||||  |||||||| |||||||||
seq2  ATCCTAAATCAAATAGGGGACTGATATCCAATATATATATAAAGAACTCA  449

seq1  AGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCA  497
      | |||||||| ||||||||| |||||||||||||||||||||| ||||||
seq2  AAAAGGTGGACTCCAGAAAAACAAATAACCCCATTAAAAAATGAGGCTCA  499

seq1  GAGCTAAACAAAGAATT  514
      |||||||||||||||||
seq2  GAGCTAAACAAAGAATT  516

seq1: chr9_59914472_59915966
seq2: B6Ng01-159B20.g_67_1107 (reverse)

seq1  AAGTCTGCAAAGTGTTGCTCTACTTCTCAACAGGCAGCAAATCTTTTGTA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CAGAGCTAGACCACATGGTCTCTGTTATCATGGCAAGCTGTCCCAATAAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  ACTTTATTCACAAGAACAGAAGATGACAGCTAAATAGGACTTCTAGACTA  150
                                                        
seq2  --------------------------------------------------  0

seq1  GATTCGGTTCCCCGGCCATATTTACTAGAGTCAGGCCGCAGGCAGTGTTC  200
                                                        
seq2  --------------------------------------------------  0

seq1  TAAGTCCCAGATCAGATTGTTCCCCGATGCACTGAAGGCTGAATCGCCAA  250
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGGCTCCATCCCATTTGGATGCTGGAAGCCACATTTTGTAACTGCGGC  300
                                                        
seq2  --------------------------------------------------  0

seq1  CACCTTCGTGACTTTCCATGTGGTTGTTTCTTGTCACTGGGGAATAGCCA  350
                                                        
seq2  --------------------------------------------------  0

seq1  AAGGGCAAATGAAATAACCCAGAACTTTCCGGACCAAAAAAGTAGACTTT  400
                                                        
seq2  --------------------------------------------------  0

seq1  TCAGCTGTGCCCCATGCTCAGTGAAAAGTCTTGGGCAAGTTGGTCACTGG  450
                               ||||||   ||||||  ||||   |
seq2  -------------------------AAGTCT---GCAAGT--GTCA--TG  18

seq1  CTCCAAGGGCACGCTCTCTTGTTCTCTTGTTCCTCATACCATTTTGCTTG  500
      |||||  |||||||| |||||||||||   ||||||||||||||||||||
seq2  CTCCA--GGCACGCT-TCTTGTTCTCT--GTCCTCATACCATTTTGCTTG  63

seq1  CTATGTGGAGGTTCTGAGAGAACGAAGAGAAACCAAACGACTATTACAAT  550
      |||||| |||  |||||||| ||||||||||||  |||||||||||| ||
seq2  CTATGT-GAG--TCTGAGAG-ACGAAGAGAAAC--AACGACTATTAC-AT  106

seq1  AGATGCTTGTTAAGCATAAAGCGTCCCACAAATCCAAGCTGTGGTGAATC  600
      |||||| |||  ||||| |||||| |||||||||  |||||| |||||||
seq2  AGATGC-TGT--AGCAT-AAGCGT-CCACAAATC--AGCTGT-GTGAATC  148

seq1  ATTTCGGTTGCTCCCTACTGACAGCGTCTATGTTCCTGAAGGGCTTCAGG  650
      ||||||| |||||||||||||||||||||||||| ||||| |||||||||
seq2  ATTTCGG-TGCTCCCTACTGACAGCGTCTATGTT-CTGAAAGGCTTCAGG  196

seq1  GAGTGTTTCCCTCATGATGTTGAATTCCTACAGCAACCAACTCTAGTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTTCCCTCATGATGTTGAATTCCTACAGCAACCAACTCTAGTGAG  246

seq1  GCCCAGCTCTCAGGAGATTTTGGAACTTGCCCAGGTTGCCCATGCACTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCTCTCAGGAGATTTTGGAACTTGCCCAGGTTGCCCATGCACTAG  296

seq1  TGAACAGAGCTGGCACCTGCCGCCGGTCGCATCTGCCATCGGCCTAGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGAGCTGGCACCTGCCGCCGGTCGCATCTGCCATCGGCCTAGACC  346

seq1  AACTTGCTCTATGCATTTTCAGGTCAATAAGCAGGATGTAAGGAGATTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCTCTATGCATTTTCAGGTCAATAAGCAGGATGTAAGGAGATTTG  396

seq1  TGATTTCTCACAGGTTTCTCCTGCTGCCGTCTGGGATCATTTGACCTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTCACAGGTTTCTCCTGCTGCCGTCTGGGATCATTTGACCTGTT  446

seq1  AGGTCACTTTCTGTTTACTGTACACTCTTCCGTCTTTACTCAAGTTGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACTTTCTGTTTACTGTACACTCTTCCGTCTTTACTCAAGTTGCAT  496

seq1  CCTGGCCCTCTAAATGACAACCAAGTCTCTATCCAGTCAAAACTAAGACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCCTCTAAATGACAACCAAGTCTCTATCCAGTCAAAACTAAGACA  546

seq1  ACACAACATGAACACTCTTTGGCTTCAAATGGAAAACAAAATGCCTCTGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACATGAACACTCTTTGGCTTCAAATGGAAAACAAAATGCCTCTGG  596

seq1  AAAGCTTCCTTCTGGCTGTGATATTTATAATAGTGGTAAAGGTGGAGAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTCCTTCTGGCTGTGATATTTATAATAGTGGTAAAGGTGGAGAGA  646

seq1  GGACATGTTTGAAATCTCATCCTCCTGAGAAGCCAGGTCCTCAAAAGCAC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGTTTGAAATCTCATCCTCCTGAGAAGCCAGGTCCTCAAAAGCAC  696

seq1  TGACAGATCTGGAGTCAGCCCCCTTCTCTACAGACAAAGAAACCAAGTCC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGATCTGGAGTCAGCCCCCTTCTCTACAGACAAAGAAACCAAGTCC  746

seq1  CAGGAAGTGAAGGGACTTCTCCAAGTTGGCTGGGTGAGGGCTTCCTGCCT  1250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTGAAGGGACTTCTCCAAGTTGGCTGGGTGAGGGCTTCCTGCCT  796

seq1  ACAGCCTCCTTCTCATGACACCATGGTGTCCTCCTTCTTCGTACCTATCT  1300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTCCTTCTCATGACACCATGGTGTCCTCCTTCTTCGTACCTATCT  846

seq1  ACCTGCCTTAAGAGTTTGGGCTTTAGGTCCTAGCCCCTCTCTAATTCCAT  1350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCTTAAGAGTTTGGGCTTTAGGTCCTAGCCCCTCTCTAATTCCAT  896

seq1  AATCTGAAGAAATCTCCTCAGTGGGGCTGTACTTTGGGGAGTCTTTCTCT  1400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAAGAAATCTCCTCAGTGGGGCTGTACTTTGGGGAGTCTTTCTCT  946

seq1  AGATCCCTGGCTGCAAGCCTAAGAACAGTCTCATGATATCACACAGCCAC  1450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCTGGCTGCAAGCCTAAGAACAGTCTCATGATATCACACAGCCAC  996

seq1  GGGTGACATTGCCACCTGTAAAATGACAGCATTGAAGGAGAATTC  1495
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGACATTGCCACCTGTAAAATGACAGCATTGAAGGAGAATTC  1041