BAC Information

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BAC

Clone NameB6Ng01-159B23
Chromosome9 (Build37)
Map Location 75,211,903 - 75,332,804
singlet/doubletdoublet
Overlap geneLOC384954, Mapk6, Leo1, EG666190, LOC100042070
Upstream geneNr1h2-ps, LOC100040764, Onecut1, BC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10
Downstream geneTmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1, Gfral, Hcrtr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159B23.bB6Ng01-159B23.g
ACCDH952881DH952882
length1,139808
definitionDH952881|Mus musculus domesticus DNA, BAC clone: B6Ng01-159B23, 5' end.DH952882|Mus musculus domesticus DNA, BAC clone: B6Ng01-159B23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,331,642 - 75,332,804)(75,211,903 - 75,212,711)
sequence
gaattccaggccagccagggctacatggtgagagctcatttcaaaacaaa
acaaaacaaaagatgcataatacatacatacatacatacatgaaatgaaa
atggaatctaggggtttctgcatagcccatctcattgcttcatgtaggtc
aaagcgattgttctgtcttggatagacttgatgggctagggatgtacgta
agtagtaggaagcagttcagcgcacaaagcccgagattcagtcccagcac
aaacagggatctaacaacttgactgtacgagacaccagtgcacagctaca
tctcagctctcctctttcttctttgtcttcttctggagggtttgtctcct
ggagagacatgaagcacgggttatagaattcaatagaaggcattcctcga
agctttgtccacactagttctgaactggtgggagaaatctgccacagaga
cctgtgttcaggtcacaacacctgggaagacagacccctgggacctggct
gccctgggtggctgtcacggtaggagggacacttcattcagtgcggcatt
tctatcacattacttgaagtacattattttctttaaatgcttctataaat
tcagtgttttaaagtctgattttagaggctgaagagatggctcttttgag
aggcctcaggtctggttcctggtacccacatggtggctcataaccacctg
tccctctatttagggtagggaaggttccatcattgttttctggaccacag
gcgctgtgtgcatgtggtatacatgcaaggaaaacactcataaatagaaa
aaaaatcttaaaagactgaattttcagaatgcttatgtatgttttaaaat
tatttacatctgtatacacacataaaatgagttgacaagtgtcttagtca
ggtttctattcctgcacaaacatcatgacagagcagtgggagaaaggttt
attcagctacacttcatgttgctgttcatcaccaaggagtcaggactgac
ctcagtaaggtcagaaaagcagggctggatgcgaagcctatgagggatgt
tctatctgcttgcatccttggctggctctagcctgatctctatagacgac
tacagcccagagatggttccactccacggggctttcccc
gaattcttggttacctacccgcccttaggaacaaaccaagtcagaagtct
gccttagcttcagacacaaaaaaaatcaacctgctaataactaactggtt
tcaaaacttcccacaaaacatcaggcccacgccagtgagattgctcagtg
gttaagggctcctgctgccaagcctgaagttccataaccagaaaccacat
agcggagggagaaaaaccaactcccaaaagttgtcccctgatttccacac
acatgctagagcaccctcttacactcttctggacactctgcattggagca
agggttacaatttctccatattctctccagcacttgcctgtcttcctacc
tatatcctccccactggatataaaacatgaggtcctagtggctttgatgt
ctactttcctagaggctctctacgcacaggaggactttcacaggaatcgg
ttgtttgtatataatctttggggaatgagcgtcccagttccttcactttc
caatcagtttgcttttttaaattattatgttttgggattcatgctttaga
aacagatctctttcgagacatatggcttgcaaatatcccatcttggtagg
gtatctttccatagaatgagttgagggaatatcctttatgtttttggaag
agtttgtgaagggacttgctactagtcctttggtagaattcaccagtaaa
gccatctaggcatagctcttaaaaattacactcatttatttatataaatt
aattttgtgtggggtggaagggccgtgcggaaagactgtggaaatattgg
aacccgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_75331642_75332804
seq2: B6Ng01-159B23.b_46_1184 (reverse)

seq1  GGGGAAAGGCCCCTTGTGGGTGGGACCATCTCTGGGCTGGTAGTCTTGGT  50
      ||||||| ||||| || | |||| |||||||||||||| ||||||     
seq2  GGGGAAA-GCCCCGTG-GAGTGGAACCATCTCTGGGCT-GTAGTC----G  43

seq1  TCTATAAGAGAGCAGGCT-GAGCAAGCCAGGGGAAGCAAGCCAGTAAGAA  99
      ||||| ||||| |||||| |||| |||||  ||| ||||| |||  ||||
seq2  TCTAT-AGAGATCAGGCTAGAGCCAGCCA-AGGATGCAAG-CAGATAGAA  90

seq1  CATCCCTCCATGGCTTCTGCAT-CAGCTCCTGC-TTTCTGACCTACTTGA  147
      ||||||||   |||||| |||| |||| ||||| ||||||||||   |||
seq2  CATCCCTCATAGGCTTC-GCATCCAGC-CCTGCTTTTCTGACCTTACTGA  138

seq1  GTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAACATGGAAGTGTAAG  197
      | | |||||||||||  | |||||||||||||||||||| ||||||| ||
seq2  GGT-CAGTCCTGACT--CCTTGGTGATGAACAGCAACAT-GAAGTGT-AG  183

seq1  CTGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGTTTGTG  247
      |||||||||||  || |||||  || ||| |||  |||||||||||||||
seq2  CTGAATAAACC--TTTCTCCC--AC-TGC-TCT--GTCATGATGTTTGTG  225

seq1  CAGGAATAGAAACCCTGACTAAGACACTTGTCAACTCATTTTTATGTGTG  297
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  CAGGAATAGAAA-CCTGACTAAGACACTTGTCAACTCA-TTTTATGTGTG  273

seq1  TATACAGATGTAAATAATTTTAAAACATACATAAGCATTCTGAAAATTCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGATGTAAATAATTTTAAAACATACATAAGCATTCTGAAAATTCA  323

seq1  GTCTTTTAAGATTTTTTTTCTATTTATGAGTGTTTTCCTTGCATGTATAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTAAGATTTTTTTTCTATTTATGAGTGTTTTCCTTGCATGTATAC  373

seq1  CACATGCACACAGCGCCTGTGGTCCAGAAAACAATGATGGAACCTTCCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCACACAGCGCCTGTGGTCCAGAAAACAATGATGGAACCTTCCCT  423

seq1  ACCCTAAATAGAGGGACAGGTGGTTATGAGCCACCATGTGGGTACCAGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAAATAGAGGGACAGGTGGTTATGAGCCACCATGTGGGTACCAGGA  473

seq1  ACCAGACCTGAGGCCTCTCAAAAGAGCCATCTCTTCAGCCTCTAAAATCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACCTGAGGCCTCTCAAAAGAGCCATCTCTTCAGCCTCTAAAATCA  523

seq1  GACTTTAAAACACTGAATTTATAGAAGCATTTAAAGAAAATAATGTACTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAAAACACTGAATTTATAGAAGCATTTAAAGAAAATAATGTACTT  573

seq1  CAAGTAATGTGATAGAAATGCCGCACTGAATGAAGTGTCCCTCCTACCGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAATGTGATAGAAATGCCGCACTGAATGAAGTGTCCCTCCTACCGT  623

seq1  GACAGCCACCCAGGGCAGCCAGGTCCCAGGGGTCTGTCTTCCCAGGTGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCACCCAGGGCAGCCAGGTCCCAGGGGTCTGTCTTCCCAGGTGTT  673

seq1  GTGACCTGAACACAGGTCTCTGTGGCAGATTTCTCCCACCAGTTCAGAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTGAACACAGGTCTCTGTGGCAGATTTCTCCCACCAGTTCAGAAC  723

seq1  TAGTGTGGACAAAGCTTCGAGGAATGCCTTCTATTGAATTCTATAACCCG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGGACAAAGCTTCGAGGAATGCCTTCTATTGAATTCTATAACCCG  773

seq1  TGCTTCATGTCTCTCCAGGAGACAAACCCTCCAGAAGAAGACAAAGAAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCATGTCTCTCCAGGAGACAAACCCTCCAGAAGAAGACAAAGAAGA  823

seq1  AAGAGGAGAGCTGAGATGTAGCTGTGCACTGGTGTCTCGTACAGTCAAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGAGCTGAGATGTAGCTGTGCACTGGTGTCTCGTACAGTCAAGT  873

seq1  TGTTAGATCCCTGTTTGTGCTGGGACTGAATCTCGGGCTTTGTGCGCTGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGATCCCTGTTTGTGCTGGGACTGAATCTCGGGCTTTGTGCGCTGA  923

seq1  ACTGCTTCCTACTACTTACGTACATCCCTAGCCCATCAAGTCTATCCAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTCCTACTACTTACGTACATCCCTAGCCCATCAAGTCTATCCAAG  973

seq1  ACAGAACAATCGCTTTGACCTACATGAAGCAATGAGATGGGCTATGCAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACAATCGCTTTGACCTACATGAAGCAATGAGATGGGCTATGCAGA  1023

seq1  AACCCCTAGATTCCATTTTCATTTCATGTATGTATGTATGTATGTATTAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTAGATTCCATTTTCATTTCATGTATGTATGTATGTATGTATTAT  1073

seq1  GCATCTTTTGTTTTGTTTTGTTTTGAAATGAGCTCTCACCATGTAGCCCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTTTGTTTTGTTTTGTTTTGAAATGAGCTCTCACCATGTAGCCCT  1123

seq1  GGCTGGCCTGGAATTC  1163
      ||||||||||||||||
seq2  GGCTGGCCTGGAATTC  1139

seq1: chr9_75211903_75212711
seq2: B6Ng01-159B23.g_66_873

seq1  GAATTCTTGGTTACCTACCCGCCCTTAGGAACAAACCAAGTCAGAAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTTACCTACCCGCCCTTAGGAACAAACCAAGTCAGAAGTCT  50

seq1  GCCTTAGCTTCAGACACAAAAAAAATCAACCTGCTAATAACTAACTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGCTTCAGACACAAAAAAAATCAACCTGCTAATAACTAACTGGTT  100

seq1  TCAAAACTTCCCACAAAACATCAGGCCCACGCCAGTGAGATTGCTCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACTTCCCACAAAACATCAGGCCCACGCCAGTGAGATTGCTCAGTG  150

seq1  GTTAAGGGCTCCTGCTGCCAAGCCTGAAGTTCCATAACCAGAAACCACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGGCTCCTGCTGCCAAGCCTGAAGTTCCATAACCAGAAACCACAT  200

seq1  AGCGGAGGGAGAAAAACCAACTCCCAAAAGTTGTCCCCTGATTTCCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGAGGGAGAAAAACCAACTCCCAAAAGTTGTCCCCTGATTTCCACAC  250

seq1  ACATGCTAGAGCACCCTCTTACACTCTTCTGGACACTCTGCATTGGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTAGAGCACCCTCTTACACTCTTCTGGACACTCTGCATTGGAGCA  300

seq1  AGGGTTACAATTTCTCCATATTCTCTCCAGCACTTGCCTGTCTTCCTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTACAATTTCTCCATATTCTCTCCAGCACTTGCCTGTCTTCCTACC  350

seq1  TATATCCTCCCCACTGGATATAAAACATGAGGTCCTAGTGGCTTTGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCTCCCCACTGGATATAAAACATGAGGTCCTAGTGGCTTTGATGT  400

seq1  CTACTTTCCTAGAGGCTCTCTACGCACAGGAGGACTTTCACAGGAATCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTCCTAGAGGCTCTCTACGCACAGGAGGACTTTCACAGGAATCGG  450

seq1  TTGTTTGTATATAATCTTTGGGGAATGAGCGTCCCAGTTCCTTCACTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTATATAATCTTTGGGGAATGAGCGTCCCAGTTCCTTCACTTTC  500

seq1  CAATCAGTTTGCTTTTTTAAATTATTATGTTTTGGGATTCATGCTTTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGTTTGCTTTTTTAAATTATTATGTTTTGGGATTCATGCTTTAGA  550

seq1  AACAGATCTCTTTCGAGACATATGGCTTGCAAATATCCCATCTTGGTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATCTCTTTCGAGACATATGGCTTGCAAATATCCCATCTTGGTAGG  600

seq1  GTATCTTTCCATAGAATGAGTTGAGGGAATATCCTTTATGTTTTTGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTTCCATAGAATGAGTTGAGGGAATATCCTTTATGTTTTTGGAAG  650

seq1  AGTTTGTGAA-GGACTTGCTACTAGTCCTTTGGTAGAATTCACCAGTAAA  699
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTGAAGGGACTTGCTACTAGTCCTTTGGTAGAATTCACCAGTAAA  700

seq1  GCCATCTAGGCATAGCTCTTAAAAATTACACTCATTTATTTATTAATTAA  749
      |||||||||||||||||||||||||||||||||||||||||||  || ||
seq2  GCCATCTAGGCATAGCTCTTAAAAATTACACTCATTTATTTAT--ATAAA  748

seq1  TTAATTTTGTGTGGGGTGG-AGGGCCGTGCTGGAGAGACTGTGGAGAAAT  798
      ||||||||||||||||||| |||||||||| ||| |||||||||| | ||
seq2  TTAATTTTGTGTGGGGTGGAAGGGCCGTGC-GGAAAGACTGTGGAAATAT  797

seq1  TGGAACCCGTG  809
      |||||||||||
seq2  TGGAACCCGTG  808