BAC Information

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BAC

Clone NameB6Ng01-159C18
Chromosome9 (Build37)
Map Location 19,455,808 - 19,456,899
singlet/doubletsinglet
Overlap geneEG624341
Upstream geneMuc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75
Downstream geneLOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159C18.bB6Ng01-159C18.g
ACCDH952919DH952920
length1,2531,101
definitionDH952919|Mus musculus domesticus DNA, BAC clone: B6Ng01-159C18, 5' end.DH952920|Mus musculus domesticus DNA, BAC clone: B6Ng01-159C18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgggaggtaggacctcgaagatttatcgtttgggatgtaaataa
ataaagtaattttattaagaaaataataaaaatttcatgctccaaataat
tgaaatggcataaacatactaacaaaaaagggaaagctttgtagcttgag
ggatggacaatcaattaagaccttactcttgcaaaaaaaggtaagtttgc
tttacatgacatacatcagtcagttaaagttgcttgtaattcttcctccg
gggtatctgaattccttattttgactctgataactatagtcatacataaa
cacatatatacaattaaagttagaatctaatcttttttcaagaaaagctt
tggaaagctaacaaaatatacttctacgtttacgaaatcaggatttccct
tatgaatattgattgaaaaataatcaataaaattctccctaacggaatcc
aggaacacatcataacaatcatccatcatgattaaataggcttcattcca
ggaatacaggatggtttaatatacggacatccatcaacgtaatccattat
ataaacaaactcaaagataaaaaccacaggatgaacttgcctgatagcaa
tttacagatccaatgcaatccccatcaaaattccaaatcaattcttcaat
gaattagaaagggcaatttgcaaattcatatggaataacaaaaaacttag
gatagcaaaaactcttctcaatgataaaagaatctgtggtggaatcacca
tgtctgacctaaagctttactacagagcaattgtgataaaaactgcatgg
tactgggtataagacagactggtagaccaaaggaatagaattgaagaccc
agaaatgaacccacacacctatggtcacttgatctttgacagggagctaa
accatccaatggaaaagacagcattttcagaaatggtgctggcacactgg
cggtatcatgtagaagatgcgaatgatccatctatctctgtactaaggtc
aagtctagtgcatcaggactccacataaacacagacactgaaactaaaga
gggagaaagtagggaaagcctcgagagatgggctcaggggaataattctg
gatagaaagccaaggcttgtgctgtaggatcaggatggacaatgggactt
catggaaatcaacttctgtaaggcaagagacctgtctatagaaatgtcca
cagaatgggaagacctacatctatcggtggacattagcttattttaagtt
cat
gaattctcacgggtatataagtggctcagggctcttgcatctcattgctc
ttccctgccaattctcaaaacaaggtacatgtttgctcaagggggaacat
ctaattgaggactaatatagtcttgctgtgtttttttaattcctgagacc
tctccagcataacccctctgccttgtgtaaaattagtctcttagtcaagc
tgaactttttgcttctcttgggacgttgggatgagcacacactgagattc
tttacacttaactttggggaaagatagtctaatgaagcattgccttatcc
ttaactgagtaaagggcagggaaaacgatgccaacaggttaactctgagg
aagcacccaggagactcaacagagaagatgttgaacttggggatgtcaga
cccatggaaaggtgatgaaaacattgtgtgtagaaggcttattaaaatta
aagagaaatggctgaagaataagtattttaagcactttcctagcatgcat
gtgtctctgggttcattcaccagtactggtgaaaacaaacaaaaaccaag
tcaatcaataatagaaatagttgaataagtatgccagtgttgaggttcat
tcaccagtattggtgaaaacaaaaaagtcaaccaataacagaaagagtta
aataagtatcccagtgttgaatgcaaagatacaggaagattttaaggaaa
tcacattatttggtgtaaataaggaaagaactacaatgtaaagctagaac
gatgtgggggcttgcacatcataattagtgtgctagtgctagtgtggtct
ctgattcttaacgtttttgcttaagagcttacagatacaacaagctacaa
tttgctaatcagatgttttgttacttgtcactttgttttataacctcgtc
agtcatccactcacatgaatgactgcagaatggttctctattcagttttc
ctggaagtagtatagatagagaaggttttattttttcttttctaagaaga
tcaacttgttagctgaggaggaaggatgttcatgaactttggatccttta
ccttccattcttcaagttcccaaggtgacaagcccaaggctatatggccc
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_19455808_19456899
seq2: B6Ng01-159C18.g_65_1165

seq1  GAATTCTCACGGGTATATAAGTGGCTCAGGGCTCTTGCATCTCATTGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACGGGTATATAAGTGGCTCAGGGCTCTTGCATCTCATTGCTC  50

seq1  TTCCCTGCCAATTCTCAAAACAAGGTACATGTTTGCTCAAGGGGGAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGCCAATTCTCAAAACAAGGTACATGTTTGCTCAAGGGGGAACAT  100

seq1  CTAATTGAGGACTAATATAGTCTTGCTGTGTTTTTTTAATTCCTGAGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGAGGACTAATATAGTCTTGCTGTGTTTTTTTAATTCCTGAGACC  150

seq1  TCTCCAGCATAACCCCTCTGCCTTGTGTAAAATTAGTCTCTTAGTCAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCATAACCCCTCTGCCTTGTGTAAAATTAGTCTCTTAGTCAAGC  200

seq1  TGAACTTTTTGCTTCTCTTGGGACGTTGGGATGAGCACACACTGAGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTTTGCTTCTCTTGGGACGTTGGGATGAGCACACACTGAGATTC  250

seq1  TTTACACTTAACTTTGGGGAAAGATAGTCTAATGAAGCATTGCCTTATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACTTAACTTTGGGGAAAGATAGTCTAATGAAGCATTGCCTTATCC  300

seq1  TTAACTGAGTAAAGGGCAGGGAAAACGATGCCAACAGGTTAACTCTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGAGTAAAGGGCAGGGAAAACGATGCCAACAGGTTAACTCTGAGG  350

seq1  AAGCACCCAGGAGACTCAACAGAGAAGATGTTGAACTTGGGGATGTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCCAGGAGACTCAACAGAGAAGATGTTGAACTTGGGGATGTCAGA  400

seq1  CCCATGGAAAGGTGATGAAAACATTGTGTGTAGAAGGCTTATTAAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGAAAGGTGATGAAAACATTGTGTGTAGAAGGCTTATTAAAATTA  450

seq1  AAGAGAAATGGCTGAAGAATAAGTATTTTAAGCACTTTCCTAGCATGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAATGGCTGAAGAATAAGTATTTTAAGCACTTTCCTAGCATGCAT  500

seq1  GTGTCTCTGGGTTCATTCACCAGTACTGGTGAAAACAAACAAAAACCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCTGGGTTCATTCACCAGTACTGGTGAAAACAAACAAAAACCAAG  550

seq1  TCAATCAATAATAGAAATAGTTGAATAAGTATGCCAGTGTTGAGGTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCAATAATAGAAATAGTTGAATAAGTATGCCAGTGTTGAGGTTCAT  600

seq1  TCACCAGTATTGGTGAAAACAAAAAAGTCAACCAATAACAGAAAGAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGTATTGGTGAAAACAAAAAAGTCAACCAATAACAGAAAGAGTTA  650

seq1  AATAAGTATCCCAGTGTTGAATGCAAAGATACAGGAAGATTTTAAGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTATCCCAGTGTTGAATGCAAAGATACAGGAAGATTTTAAGGAAA  700

seq1  TCACATTA-TTGGTGTAAATAAGGAAAGAACTACAATGTAAAGCTAGAAC  749
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTATTTGGTGTAAATAAGGAAAGAACTACAATGTAAAGCTAGAAC  750

seq1  GATGTGGGGGCTTGCACATCAT-ATTAGTGTGCTAGTGCTAGTGTGGTCT  798
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GATGTGGGGGCTTGCACATCATAATTAGTGTGCTAGTGCTAGTGTGGTCT  800

seq1  CTGATTCTTAACG-TTTTGCTTAAGAGC-TACAGAATACAACAAGCTAC-  845
      ||||||||||||| |||||||||||||| ||||| |||||||||||||| 
seq2  CTGATTCTTAACGTTTTTGCTTAAGAGCTTACAG-ATACAACAAGCTACA  849

seq1  ATTTGCTATTCAGATG-TTTGTTAC-TGTCACTTTG-TTTAT-ACCCCGT  891
      |||||||| ||||||| |||||||| |||||||||| ||||| ||| |||
seq2  ATTTGCTAATCAGATGTTTTGTTACTTGTCACTTTGTTTTATAACCTCGT  899

seq1  CAGTCATCCACTCACATGAATGACTGCAGAATGGTTCTCTATTCAG-TTT  940
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAGTCATCCACTCACATGAATGACTGCAGAATGGTTCTCTATTCAGTTTT  949

seq1  CCTGGAAGTAGTATAGATAGAGGAAGGTTTTATTTTTTCTTTTCTAAAGA  990
      ||||||||||||||||||||| |||||||||||||||||||||||||   
seq2  CCTGGAAGTAGTATAGATAGA-GAAGGTTTTATTTTTTCTTTTCTAA--G  996

seq1  AAGATCAACTTG-TAGCTGAGGAGGAGAGGATGTTCATGAACTTTGGATC  1039
      |||||||||||| ||||||||||||| |||||||||||||||||||||||
seq2  AAGATCAACTTGTTAGCTGAGGAGGA-AGGATGTTCATGAACTTTGGATC  1045

seq1  CTTTACCCTCACTTC-TCAAG-TCCCAAGGTGACAAGCCCATGTCTATAT  1087
      ||||||| ||  ||| ||||| ||||||||||||||||||| | ||||||
seq2  CTTTACCTTCCATTCTTCAAGTTCCCAAGGTGACAAGCCCAAGGCTATAT  1095

seq1  -GCCCA  1092
       |||||
seq2  GGCCCA  1101