BAC Information

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BAC

Clone NameB6Ng01-159D24
Chromosome9 (Build37)13 (Build37)
Map Location 118,524,320 - 118,524,7263,745,498 - 3,745,634
singlet/doubletsingletsinglet
Overlap geneItga9
Upstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik, Eomes, Golga4
Downstream geneLOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159D24.bB6Ng01-159D24.g
ACCDH952968DH952969
length641222
definitionDH952968|Mus musculus domesticus DNA, BAC clone: B6Ng01-159D24, 5' end.DH952969|Mus musculus domesticus DNA, BAC clone: B6Ng01-159D24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(118,524,320 - 118,524,726)(3,745,498 - 3,745,634)
sequence
gaattctctctttcaaagcgttcatccccgtggctttcagaggtctgtgc
atagccatcactgttacccagctccagaacattgttccccaaagaaacgc
cattcagatcagtaatcactgtgagccttgtcagcaggatccaggagatg
tggccctttgtgtctgtctgctttcctttgtgatgtttctgagtctcgcc
tatagagtagcacatatcagtacttaccggttgcatgttactccgtggtg
cagatcgccttattctgcgtatccactgatcacctgatgggcattaaaat
ggtttcacattttggttattgtgagtaattgtttctgtgtgtgtgtgtgt
gtgtgctcatgtccccccccaagtgtgtgtgtgtgcgtgtgctcatgtcc
ccccaagtgtgtgtgtgtgtgtgtgcgctcatggcccccccaagtgtgtg
tgtgtgggtgtgctcatgtcccccccagttgtgtgtgtgtgtacatgtgt
gtgtgtgctcatgtcccccccaagtgtgtgtgtgtgtgtacatgtgtgtg
tgtgctcatgtcccccccaagtgtgtgtgtgtgtacatgtgtgtgtgtgc
tcatgtcccccccaggtgtgtgtgtggtgctcatgtccccc
cttttaatggtccgttttacccatcaagttgaccagactatgtggtgccc
agatatttggccaaatgttcttctaggtatttttgtcagagtgtgtttaa
aggaggtttcatgagtccaggctctccatagtcacagaacttatagaata
tatatatatatatatatatatatatatatatatatatatatatgagtggg
atatatatatatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_118524320_118524726
seq2: B6Ng01-159D24.b_461_632 (reverse)

seq1  ATGTACACACACACACACACAGAGGCACTAACCATCACAGCTGTCTGGCC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTTACACACCTGTGTATATGTGCACACACACAAGCACTAACCATCACTGC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGCTTGGCCTTTACACACCTGTGTATATGTGCACACACACAGGCACTAAC  150
                                |||| ||||||||           
seq2  --------------------------ATGTACACACACA-----------  13

seq1  CATCACAGCTGCTTGGCCTTTACACACCTGTGTATATGTGCACACACACA  200
         ||||    |||||             | | | ||| |||||||||| 
seq2  ---CACA----CTTGG------------GGGGGACATGAGCACACACAC-  43

seq1  AGCACTAACCATCACAGCTGTCTGCCTTTACACACCTGTGTATATGTACA  250
                                               | |||||||
seq2  -----------------------------------------ACATGTACA  52

seq1  CACACACACACAC---AGAGGCACTAACCATCACAGCTGTCTGGCCTTTA  297
      |||||||||||||    | || ||  |  | |||               |
seq2  CACACACACACACTTGGGGGGGAC--ATGAGCAC---------------A  85

seq1  CACACCTGTGTATATGTGCACACACACAAGCACTAACCATTACAGCTGCT  347
      |||||      | |||| |||||||||              ||| |||  
seq2  CACAC------ACATGTACACACACAC--------------ACAACTGGG  115

seq1  TGGCCTTTACACACCTGCTTACATGTACACACACACACACACACAC----  393
       ||                 |||||  ||||| |||||||||||||    
seq2  GGG----------------GACATGAGCACACCCACACACACACACTTGG  149

seq1  -----ACA----CACACACACAC  407
            ||    | |||||||||
seq2  GGGGGCCATGAGCGCACACACAC  172

seq1: chr13_3745498_3745634
seq2: B6Ng01-159D24.g_207_290 (reverse)

seq1  ATATATATATATATCGTCAGTGAGGTATATATATCCATCAGTGGTGTGTG  50
      |||||||||||||            |||||||||||  || |        
seq2  ATATATATATATA------------TATATATATCC--CACT--------  28

seq1  TGTATATATATATATGTATATGTGTGTATATATATATATAAAATCAGTGA  100
           |||||||||| ||||| | | ||||||||||||||          
seq2  ----CATATATATATATATATATATATATATATATATATA----------  64

seq1  GGTATATATATATTCACCTGTCTAATGGCCTATAAGT  137
        ||||||||||||               ||||||||
seq2  --TATATATATATT---------------CTATAAGT  84