BAC Information

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BAC

Clone NameB6Ng01-159F23
Chromosome9 (Build37)
Map Location 76,231,710 - 76,389,238
singlet/doubletdoublet
Overlap geneC530008M07Rik
Upstream geneMapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1, Gfral, Hcrtr2
Downstream geneTinag, LOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159F23.bB6Ng01-159F23.g
ACCDH953053DH953054
length986891
definitionDH953053|Mus musculus domesticus DNA, BAC clone: B6Ng01-159F23, 5' end.DH953054|Mus musculus domesticus DNA, BAC clone: B6Ng01-159F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,231,710 - 76,232,646)(76,388,347 - 76,389,238)
sequence
gaattcaccatctctacaaaatgtctgctcctaggtttagaaaccttata
tagctttaactgaactgagattgctcctgaaagcatatttaatcatgaac
actgaataggccaaaacctgaaccctaagccacatgtagctggccaatca
tctgacaagttggagtagcaacaacaacaacaacaacaacaaaaattaga
atttcaaatacctattcaacaaactagagacaatatttccatataaagaa
agaggaccaaggactttacccagatgcccatataccatcacaaatacatg
aacataaataacagtaagtttccaccaaaaattgtaatgctgtggtaata
tcctctgagaaaagcaagccagatgttatacaaggcagggatttcaaaat
agcaataaagaaagtgataaggtatctcagcaagtatgtgaataaatttc
ccatgttatacaacagtcaaaacaccaagtgtttaaaataaagaaaagat
attggaagtggcaagagaaacatctatatgtgagttcatacagaaggacc
tccatcagaattatagcagattttttggtaaagaccatgaaagccagaag
ggaatgaattgattttctaaagttatgaaagaccacagatgccattctag
gatactatgatgagcaaagctattggtcgtaatcagaagaggaagggaga
atttttaaagatgtaaacagacttaaggaatttatgaataccactattct
tctaaagaagacagtggaaggagttgttaggtttgatgaaaggttaatat
acataaaatagcatacagaaaatataaacactctagaacactaaatcaga
gaacaccacaaagcaacacagtgacaggactgagtagatgctgctcaata
atatcattactgtatcactcctcactaaagaagtgcagattaactgattc
atcagaaaacagagtcaattttgtgctgctctggga
gaattctgtttgcatccccgctttctcctgaatcctcatgctcacacagt
acagcttattttgtgagatggaaatcttactcctcagaatatggaatcag
aaagactcatgagcagaagtatatagtttgaattagggtggagtcatttc
tgtggcagcacaccgctgacattcaggtaccagctccaccctgaatagtc
actgttcctgggaatgtttgtttagtctccttggttgttagtaatacaga
agaatattgcccatcagtgggccccatgaatgccaaagggaaggtgagca
gatgatgggtactcatcctgggaatcagctggttgtgtaaaattagtgct
aaatcagtatcttcagttattttataaaggatatgaagcaaaatcctttt
ggtgcctttttcctttcctttggtccagtactcctttctaaacctcctac
agttctcagcagctcacactttatacaatgtatcattctcttggcagagt
tactgtctgatgtgaatgagccagcgtcattgtgccacagagtcactccc
cgatgcatcaccatgcaaacatgtctgtctagctaagagatacttaagta
ttcgtcagcactgtcattacattagaatcatctctctcctaatgatctca
gcctttgtaaagaatttcctctctatctcatctctgctctgactctcagt
gtgaattcttccgttgaatttgactcaaattagtcttttcctggaggata
tttgcttcatcaagatttaatgacatcactgttcagtggcatgcacttga
gtatcttttccttggatgagataatattctatggtagttcacgctcatgt
ttgagaaatatgtgtgaaagaaaaagaggaggggaggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_76231710_76232646
seq2: B6Ng01-159F23.b_44_979

seq1  GAATTCACCATCTCTACAAAATGTCTGCTCCTAGGTTTAGAAACCTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATCTCTACAAAATGTCTGCTCCTAGGTTTAGAAACCTTATA  50

seq1  TAGCTTTAACTGAACTGAGATTGCTCCTGAAAGCATATTTAATCATGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTAACTGAACTGAGATTGCTCCTGAAAGCATATTTAATCATGAAC  100

seq1  ACTGAATAGGCCAAAACCTGAACCCTAAGCCACATGTAGCTGGCCAATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATAGGCCAAAACCTGAACCCTAAGCCACATGTAGCTGGCCAATCA  150

seq1  TCTGACAAGTTGGAGTAGCAACAACAACAACAACAACAACAAAAATTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAAGTTGGAGTAGCAACAACAACAACAACAACAACAAAAATTAGA  200

seq1  ATTTCAAATACCTATTCAACAAACTAGAGACAATATTTCCATATAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAATACCTATTCAACAAACTAGAGACAATATTTCCATATAAAGAA  250

seq1  AGAGGACCAAGGACTTTACCCAGATGCCCATATACCATCACAAATACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACCAAGGACTTTACCCAGATGCCCATATACCATCACAAATACATG  300

seq1  AACATAAATAACAGTAAGTTTCCACCAAAAATTGTAATGCTGTGGTAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAATAACAGTAAGTTTCCACCAAAAATTGTAATGCTGTGGTAATA  350

seq1  TCCTCTGAGAAAAGCAAGCCAGATGTTATACAAGGCAGGGATTTCAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGAGAAAAGCAAGCCAGATGTTATACAAGGCAGGGATTTCAAAAT  400

seq1  AGCAATAAAGAAAGTGATAAGGTATCTCAGCAAGTATGTGAATAAATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAAAGAAAGTGATAAGGTATCTCAGCAAGTATGTGAATAAATTTC  450

seq1  CCATGTTATACAACAGTCAAAACACCAAGTGTTTAAAATAAAGAAAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTATACAACAGTCAAAACACCAAGTGTTTAAAATAAAGAAAAGAT  500

seq1  ATTGGAAGTGGCAAGAGAAACATCTATATGTGAGTTCATACAGAAGGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAGTGGCAAGAGAAACATCTATATGTGAGTTCATACAGAAGGACC  550

seq1  TCCATCAGAATTATAGCAGATTTTTTGGTAAAGACCATGAAAGCCAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAGAATTATAGCAGATTTTTTGGTAAAGACCATGAAAGCCAGAAG  600

seq1  GGAATGAATTGATTTTCTAAAGTTATGAAAGACCACAGATGCCATTCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAATTGATTTTCTAAAGTTATGAAAGACCACAGATGCCATTCTAG  650

seq1  GATACTATGATGAGCAAAGCTATTGGTCGTAATCAGAAGAGGAAGGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTATGATGAGCAAAGCTATTGGTCGTAATCAGAAGAGGAAGGGAGA  700

seq1  ATTTTTAAAGATGTAAACAGACTTAAGGAATTTATGAATACCACTATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAGATGTAAACAGACTTAAGGAATTTATGAATACCACTATTCT  750

seq1  TCTAAAGAAGACAGTGGAAGGAGTTGTTAGGTTTGATG-AAGGTTAATAT  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTAAAGAAGACAGTGGAAGGAGTTGTTAGGTTTGATGAAAGGTTAATAT  800

seq1  ACATAAAATAGCATACAGAAAATATAAACACTCTAGAACACTAAATCAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAATAGCATACAGAAAATATAAACACTCTAGAACACTAAATCAGA  850

seq1  GAACACCACAAAGCAACACAGTGACAGGACTGAGTAGATGCTGCTCAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCACAAAGCAACACAGTGACAGGACTGAGTAGATGCTGCTCAATA  900

seq1  ATATCATTACTGTTATCAACTCCTCACTAAAGAAGTGC  937
      |||||||||||| |||| ||||||||||||||||||||
seq2  ATATCATTACTG-TATC-ACTCCTCACTAAAGAAGTGC  936

seq1: chr9_76388347_76389238
seq2: B6Ng01-159F23.g_69_959 (reverse)

seq1  TCCCCCTCCCCTCCTCTTTTTCCTTCACACATA-TTCTCAAACATGAGCG  49
      |||||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  TCCCCCTCCCCTCCTCTTTTTCTTTCACACATATTTCTCAAACATGAGCG  50

seq1  TGAACTACCATAGAATATTATCTCATCCAAGGAAAAGATACTCAAGTGCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTACCATAGAATATTATCTCATCCAAGGAAAAGATACTCAAGTGCA  100

seq1  TGCCACTGAACAGTGATGTCATTAAATC-TGATGAAGCAAAATATCCTTC  148
      |||||||||||||||||||||||||||| ||||||||| |||||||| ||
seq2  TGCCACTGAACAGTGATGTCATTAAATCTTGATGAAGC-AAATATCC-TC  148

seq1  CAGGAAAAGACTAATTTTGAGTCAAATTCAACGGAAGAATTCACACTGAG  198
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAGGAAAAGACTAA-TTTGAGTCAAATTCAACGGAAGAATTCACACTGAG  197

seq1  AGTCAGAGCAGAGATGAGATAGAGAGGAAATTCTTTACAAAGGCTGAGAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGCAGAGATGAGATAGAGAGGAAATTCTTTACAAAGGCTGAGAT  247

seq1  CATTAGGAGAGAGATGATTCTAATGTAATGACAGTGCTGACGAATACTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGAGAGAGATGATTCTAATGTAATGACAGTGCTGACGAATACTTA  297

seq1  AGTATCTCTTAGCTAGACAGACATGTTTGCATGGTGATGCATCGGGGAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTCTTAGCTAGACAGACATGTTTGCATGGTGATGCATCGGGGAGT  347

seq1  GACTCTGTGGCACAATGACGCTGGCTCATTCACATCAGACAGTAACTCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGTGGCACAATGACGCTGGCTCATTCACATCAGACAGTAACTCTG  397

seq1  CCAAGAGAATGATACATTGTATAAAGTGTGAGCTGCTGAGAACTGTAGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGAATGATACATTGTATAAAGTGTGAGCTGCTGAGAACTGTAGGA  447

seq1  GGTTTAGAAAGGAGTACTGGACCAAAGGAAAGGAAAAAGGCACCAAAAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGAAAGGAGTACTGGACCAAAGGAAAGGAAAAAGGCACCAAAAGG  497

seq1  ATTTTGCTTCATATCCTTTATAAAATAACTGAAGATACTGATTTAGCACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTTCATATCCTTTATAAAATAACTGAAGATACTGATTTAGCACT  547

seq1  AATTTTACACAACCAGCTGATTCCCAGGATGAGTACCCATCATCTGCTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACACAACCAGCTGATTCCCAGGATGAGTACCCATCATCTGCTCA  597

seq1  CCTTCCCTTTGGCATTCATGGGGCCCACTGATGGGCAATATTCTTCTGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTTTGGCATTCATGGGGCCCACTGATGGGCAATATTCTTCTGTA  647

seq1  TTACTAACAACCAAGGAGACTAAACAAACATTCCCAGGAACAGTGACTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAACAACCAAGGAGACTAAACAAACATTCCCAGGAACAGTGACTAT  697

seq1  TCAGGGTGGAGCTGGTACCTGAATGTCAGCGGTGTGCTGCCACAGAAATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTGGAGCTGGTACCTGAATGTCAGCGGTGTGCTGCCACAGAAATG  747

seq1  ACTCCACCCTAATTCAAACTATATACTTCTGCTCATGAGTCTTTCTGATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACCCTAATTCAAACTATATACTTCTGCTCATGAGTCTTTCTGATT  797

seq1  CCATATTCTGAGGAGTAAGATTTCCATCTCACAAAATAAGCTGTACTGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTCTGAGGAGTAAGATTTCCATCTCACAAAATAAGCTGTACTGTG  847

seq1  TGAGCATGAGGATTCAGGAGAAAGCGGGGATGCAAACAGAATTC  892
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGAGGATTCAGGAGAAAGCGGGGATGCAAACAGAATTC  891