BAC Information

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BAC

Clone NameB6Ng01-159P11
Chromosome9 (Build37)
Map Location 77,847,593 - 78,039,497
singlet/doubletdoublet
Overlap geneGcm1, LOC666353, Fbxo9, Ick, C920006O11Rik
Upstream geneTinag, LOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212, Elovl5
Downstream geneGsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159P11.bB6Ng01-159P11.g
ACCDH953476DH953477
length5631,106
definitionDH953476|Mus musculus domesticus DNA, BAC clone: B6Ng01-159P11, 5' end.DH953477|Mus musculus domesticus DNA, BAC clone: B6Ng01-159P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,847,593 - 77,848,161)(78,038,382 - 78,039,497)
sequence
acaggctttgaatcaccacgctggcttcaaaaaaaaaaaaagaaaaactg
ttctgaggaatggctagaggcatttgggaccatcacagacaccatcatgc
acactgaggaagagtctagccaatcagggctgagtttacatgcttccatc
cctcagcagctgtgagaccttccttgtctacctatttaacctccttgata
aagatctctggcataattgagaagataggcagccatcacatggttcacgt
gagcagactcaagattggtggttccgtgcggcagtaggtggtcacaagaa
atagctgcaaaggagtcgggggcactgggtgaagattcagtctgcttctg
gctgaccaggtgtctgagcagctcacctccaaggctgtgggcaggggagc
aggggtcgggtgggggatgggcgaggcagggagcatcattgaacaaagcc
tggaacttttccttgctgttcctgacagatcttcctttgcctcaaagcca
ccttggatcattcctttgtggggaaatagttattgatccttccctccctc
cctccctccgtcc
gaattcattgtattcattgccaacaaaagtacagtagagaggaatcagcg
actgggagcatcgtgctgtggtccattcttgtgatgctaaaatagacact
caagactttatttttgaaaacaaattagagacgtacagttctggaggttg
ggcaagccaaaattgaggggctttctttcacttgctgaggatggggtaaa
ataaaagaaaaaaaaaagtgtgccctcccttgacgagagagaaagcggca
agctcgtgcattcaccttaggggtggactcccgatgaatgggaaactttg
ccccctccctctctttctccttaaagaattttttcccctttcattttacc
ctgtagaatggggcagatggttaaaaaggcatgaccgccattcctggaac
agtcataggcagcccatcaagaaccgtttgtagttaaggttacaggtggg
gcatagctctgcctttgagaaacagaggtacagtcatgaacaggaataaa
cctagtttgtctttactgtaggacggctttgaagcctaaaactgaggcaa
gctagttcttcagtacctaacccgctcctcagtgacattaattcactcgt
gacagcggagccctcatccaccttatcacctctttaaaagtgctgcccct
caaaccagttgccccaatgcaaaatggcttacgtttctgtaacaggctgg
caaaaatacatttgaaaagagacactttgtgtctctcagtccgactatca
gactacggaaacaatggacctcaaagaaaagggacactccccaggatcca
gtcagagggggatcttgtctcctgggaaacattcctttggcacagtttct
aagagttagtcagaacgtcttacagatgagactgaagcccagaaaagcag
tgagcacacgtgaccactgcctagaccaggaccgcttagatgtgcgtgcc
tgagctctctggtaaaccctgactcacttcagtacctggaagatgactgg
aggtggggaagatgggtgtgtccctggatgcctgaatccctgtccttttc
cataatgacatagttctcttttttggtctctgccccaccccaccccccgt
ccccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_77847593_77848161
seq2: B6Ng01-159P11.b_44_612

seq1  GAATTCACAGGCTTTGAATCACCACGCTGGCTTCAAAAAAAAAAAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGCTTTGAATCACCACGCTGGCTTCAAAAAAAAAAAAAGAA  50

seq1  AAACTGTTCTGAGGAATGGCTAGAGGCATTTGGGACCATCACAGACACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTTCTGAGGAATGGCTAGAGGCATTTGGGACCATCACAGACACCA  100

seq1  TCATGCACACTGAGGAAGAGTCTAGCCAATCAGGGCTGAGTTTACATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCACACTGAGGAAGAGTCTAGCCAATCAGGGCTGAGTTTACATGCT  150

seq1  TCCATCCCTCAGCAGCTGTGAGACCTTCCTTGTCTACCTATTTAACCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCCTCAGCAGCTGTGAGACCTTCCTTGTCTACCTATTTAACCTCC  200

seq1  TTGATAAAGATCTCTGGCATAATTGAGAAGATAGGCAGCCATCACATGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAAGATCTCTGGCATAATTGAGAAGATAGGCAGCCATCACATGGT  250

seq1  TCACGTGAGCAGACTCAAGATTGGTGGTTCCGTGCGGCAGTAGGTGGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTGAGCAGACTCAAGATTGGTGGTTCCGTGCGGCAGTAGGTGGTCA  300

seq1  CAAGAAATAGCTGCAAAGGAGTCGGGGGCACTGGGTGAAGATTCAGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAATAGCTGCAAAGGAGTCGGGGGCACTGGGTGAAGATTCAGTCTG  350

seq1  CTTCTGGCTGACCAGGTGTCTGAGCAGCTCACCTCCAAGGCTGTGGGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCTGACCAGGTGTCTGAGCAGCTCACCTCCAAGGCTGTGGGCAG  400

seq1  GGGAGCAGGGGTCGGGTGGGGGATGGGCGAGGCAGGGAGCATCATTGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAGGGGTCGGGTGGGGGATGGGCGAGGCAGGGAGCATCATTGAAC  450

seq1  AAAGCCTGGAACTTTTCCTTGCTGTTCCTGACAGATCTTCCTTTGCCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTGGAACTTTTCCTTGCTGTTCCTGACAGATCTTCCTTTGCCTCA  500

seq1  AAGCCACCTTGGATCATTCCTTTGTGGGGAAATAGTTATTGATCCTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACCTTGGATCATTCCTTTGTGGGGAAATAGTTATTGATCCTTCCC  550

seq1  TCCCTCCCTCCCTCCGTCC  569
      |||||||||||||||||||
seq2  TCCCTCCCTCCCTCCGTCC  569

seq1: chr9_78038382_78039497
seq2: B6Ng01-159P11.g_71_1176 (reverse)

seq1  TGGGGGGCCGGGGGTGGGGGTGGGGGCAGAGAGCAGAAAAAGGAAACTTA  50
      |||||| | ||||||||||   |||||||||| || ||||||  ||||  
seq2  TGGGGGACGGGGGGTGGGG--TGGGGCAGAGACCA-AAAAAGAGAACTAT  47

seq1  GTCAATATGGAAAAAGAACAGGGATCCAGGCATCCAGGGACACACCCATC  100
      |||| ||||| ||||| |||||||| ||||||||||||||||||||||||
seq2  GTCATTATGG-AAAAGGACAGGGATTCAGGCATCCAGGGACACACCCATC  96

seq1  TTCCCCACCTCAAGTCCATCTTCCAGGTACTGAAGTGAGTTCAGAGTTTA  150
      ||||||||||| ||| ||||||||||||||||||||||| |||| |||| 
seq2  TTCCCCACCTCCAGT-CATCTTCCAGGTACTGAAGTGAG-TCAGGGTTT-  143

seq1  ACCAGAGAGCCTCAGGCACGCACATCTAAGCGGTCCTGGTCTAGGCAGTG  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGAG-CTCAGGCACGCACATCTAAGCGGTCCTGGTCTAGGCAGTG  192

seq1  GTCACGTGTGCTCACTGCTTTTCTGTGCTTCAGTCTCATCTTGTAAGACG  250
      ||||||||||||||||||||||||| |||||||||||||| |||||||||
seq2  GTCACGTGTGCTCACTGCTTTTCTGGGCTTCAGTCTCATC-TGTAAGACG  241

seq1  TTCTGACTAACTCTTAGAAACTGTGCCAAAGGAATGTTTCCCAGGAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTAACTCTTAGAAACTGTGCCAAAGGAATGTTTCCCAGGAGACA  291

seq1  AGATCCCCCTCTGACTGGATTCCTGGGGAGTGTCCCTTTTCTTTGAGGTC  350
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGATCCCCCTCTGACTGGA-TCCTGGGGAGTGTCCCTTTTCTTTGAGGTC  340

seq1  CATTGTTTCCGTAGTCTGATAGTCGGACTGAGAGACACAAAGTGTCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTCCGTAGTCTGATAGTCGGACTGAGAGACACAAAGTGTCTCTT  390

seq1  TTCAAATGTATTTTTGCCAGCCTGTTACAGAAACGTAAGCCATTTTGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGTATTTTTGCCAGCCTGTTACAGAAACGTAAGCCATTTTGCAT  440

seq1  TGGGGCAACTGGTTTGAGGGGCAGCACTTTTAAAGAGGTGATAAGGTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAACTGGTTTGAGGGGCAGCACTTTTAAAGAGGTGATAAGGTGGA  490

seq1  TGAGGGCTCCGCTGTCACGAGTGAATTAATGTCACTGAGGAGCGGGTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCTCCGCTGTCACGAGTGAATTAATGTCACTGAGGAGCGGGTTAG  540

seq1  GTACTGAAGAACTAGCTTGCCTCAGTTTTAGGCTTCAAAGCCGTCCTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGAAGAACTAGCTTGCCTCAGTTTTAGGCTTCAAAGCCGTCCTACA  590

seq1  GTAAAGACAAACTAGGTTTATTCCTGTTCATGACTGTACCTCTGTTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGACAAACTAGGTTTATTCCTGTTCATGACTGTACCTCTGTTTCTC  640

seq1  AAAGGCAGAGCTATGCCCCACCTGTAACCTTAACTACAAACGGTTCTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAGAGCTATGCCCCACCTGTAACCTTAACTACAAACGGTTCTTGA  690

seq1  TGGGCTGCCTATGACTGTTCCAGGAATGGCGGTCATGCCTTTTTAACCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGCCTATGACTGTTCCAGGAATGGCGGTCATGCCTTTTTAACCAT  740

seq1  CTGCCCCATTCTACAGGGTAAAATGAAAGGGGAAAAAATTCTTTAAGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCATTCTACAGGGTAAAATGAAAGGGGAAAAAATTCTTTAAGGAG  790

seq1  AAAGAGAGGGAGGGGGCAAAGTTTCCCATTCATCGGGAGTCCACCCCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGGGAGGGGGCAAAGTTTCCCATTCATCGGGAGTCCACCCCTAA  840

seq1  GGTGAATGCACGAGCTTGCCGCTTTCTCTCTCGTCAAGGGAGGGCACACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATGCACGAGCTTGCCGCTTTCTCTCTCGTCAAGGGAGGGCACACT  890

seq1  TTTTTTTTTCTTTTATTTTACCCCATCCTCAGCAAGTGAAAGAAAGCCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCTTTTATTTTACCCCATCCTCAGCAAGTGAAAGAAAGCCCC  940

seq1  TCAATTTTGGCTTGCCCAACCTCCAGAACTGTACGTCTCTAATTTGTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTGGCTTGCCCAACCTCCAGAACTGTACGTCTCTAATTTGTTTT  990

seq1  CAAAAATAAAGTCTTGAGTGTCTATTTTAGCATCACAAGAATGGACCACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATAAAGTCTTGAGTGTCTATTTTAGCATCACAAGAATGGACCACA  1040

seq1  GCACGATGCTCCCAGTCGCTGATTCCTCTCTACTGTACTTTTGTTGGCAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGATGCTCCCAGTCGCTGATTCCTCTCTACTGTACTTTTGTTGGCAA  1090

seq1  TGAATACAATGAATTC  1116
      ||||||||||||||||
seq2  TGAATACAATGAATTC  1106