BAC Information

Click to search

BAC

Clone NameB6Ng01-160D13
Chromosome9 (Build37)
Map Location 53,041,923 - 53,185,998
singlet/doubletdoublet
Overlap geneDdx10, Exph5
Upstream geneLOC100042876, AI593442, Gm1715
Downstream geneKdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160D13.bB6Ng01-160D13.g
ACCDH953656DH953657
length1,1761,056
definitionDH953656|Mus musculus domesticus DNA, BAC clone: B6Ng01-160D13, 5' end.DH953657|Mus musculus domesticus DNA, BAC clone: B6Ng01-160D13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,041,923 - 53,043,105)(53,184,931 - 53,185,998)
sequence
gaattcctacctgtattttgctttttcatgaacccagacatactcagggt
ctttcaaactcaagcgcgcaaggtcctttacagatttggtctgtgtggct
gagaacagtaaagtctggcgtttcttgggaagattttcaataatagcatt
catggtatcagcaaagcccatatccaagattctatctgcctcatcaagaa
ctgcaaaaagaaaagtgcaagttgctctataatatttaagtagtatgtta
gaataaagcaatttagtgtactgcttagaatcctaaagcagaaaaggaca
ctggctaagctaagggtacagttcagtagcagctcaactgcctaacattt
gaaaggtccatgtgcaaggtactgtgttgaaatctcaaaatcgtaattta
aaaaaaaaaagtaatataatggaaaattgatcaaatctaaacaaataaaa
cctgttagaattacacagtatgttgttaatctcttagtactaacaaatca
cagttatgtgcaaaattaaaactaagggtgccaggcgtgatggcacacgc
ctttaatcccagcacttgggaggcagaggcaggcagatttctgagttcga
ggccagcctggtctacagattgagttccaggatcagccaggactacacag
agaagccctgtctcgaaaaaacaaaaaaaaaaaaaaaaaaactaagggca
tctgagtgaagaattatagagaaactctaccactataacttttctgaaag
tacaaaagcattcaaaaacgaaagaactagccctttgatgcaatacagaa
gtttattaaattaaaccaaatggcaatttgactaggggagactcagtggg
ataagcactcgccatgcaacaagcataaggactagaattcagatctccag
caccccacacaaaggcaaagtcccagcactcacagagaggtggaacccag
ctaatctggtcagctctacttgccaatctggtatgctctatgtcaccaaa
agacactgctcagtggaggaaagtggaaagcattagagtagacactgaca
gagtgacaatagagtagttctcaggactcatggcgtctaacagggggtga
acacacacgacatgtacacctccatgtacagaataagaaaaccctgtcat
gccctagtctagttaattacattgga
gaattcagttttgcagctagctgtgctgggtaattaacaagtcacaaggt
cggacatgtccccaaacgattagaggtaagagaagttatgaggaggaaaa
tggtgctaacattgggaagtggcttaggagataaggctgggggaagagac
aaggaggacaaagttcaaacacaccaggaaaaacggcagggaaaacaaac
acacaaaacccttcaaaagcagtgagcattgttcttagaattcagaaggg
aatgaagtagagaggatttggacgctgcccaaaccagctctcttttatct
gtttataattattggactaatttccacgacaagcttttggtaaaaagcaa
aacatgacagtgttatattatgccgtttctcgcaaaagtctcatagttct
gactctttatccttttcatccaggtagtactcgtcgtctgtggttgtgtc
tgtgtcccagtctgagaccagtggctccactgggtcgtccttgtagatgt
taagcggctcacttggaaatacaccatcttctggcgcctgacctgctgga
gaatttaccagctctgactgtgacaggttggaagcattaagaacatcatc
cttgaggaagccagggttcttgaggaaacttggcttccataatcttccct
gtgtgagtgagcgtttgacgttctccaagaaagccaactgctgctctttc
ccaaaaattccatagtcaataggcctggaaatggatgaggtggacttggg
acctcgtgtcctattgctatacgaagtccagctttcactttcgtaagatg
caggaagctcggagaagatttgaatcttcgattgtacccactgttgggga
aggagccatcttcgagggacagttgactcagagcattgtcaatggaagtg
ttttctgagagtgcgcccctggctttctgggggtggcttgcacacacagt
cgctttgcacgttaaagtttttaaactccttgactatagagatgtgctca
gtctgactcttggagaatggggcactcggtgcgcagctgacatgggagtt
aatcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_53041923_53043105
seq2: B6Ng01-160D13.b_46_1221

seq1  GAATTCCTACCTGTATTTTGCTTTTTCATGAACCCAGACATACTCAGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACCTGTATTTTGCTTTTTCATGAACCCAGACATACTCAGGGT  50

seq1  CTTTCAAACTCAAGCGCGCAAGGTCCTTTACAGATTTGGTCTGTGTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAACTCAAGCGCGCAAGGTCCTTTACAGATTTGGTCTGTGTGGCT  100

seq1  GAGAACAGTAAAGTCTGGCGTTTCTTGGGAAGATTTTCAATAATAGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGTAAAGTCTGGCGTTTCTTGGGAAGATTTTCAATAATAGCATT  150

seq1  CATGGTATCAGCAAAGCCCATATCCAAGATTCTATCTGCCTCATCAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTATCAGCAAAGCCCATATCCAAGATTCTATCTGCCTCATCAAGAA  200

seq1  CTGCAAAAAGAAAAGTGCAAGTTGCTCTATAATATTTAAGTAGTATGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAAAGAAAAGTGCAAGTTGCTCTATAATATTTAAGTAGTATGTTA  250

seq1  GAATAAAGCAATTTAGTGTACTGCTTAGAATCCTAAAGCAGAAAAGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAGCAATTTAGTGTACTGCTTAGAATCCTAAAGCAGAAAAGGACA  300

seq1  CTGGCTAAGCTAAGGGTACAGTTCAGTAGCAGCTCAACTGCCTAACATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAAGCTAAGGGTACAGTTCAGTAGCAGCTCAACTGCCTAACATTT  350

seq1  GAAAGGTCCATGTGCAAGGTACTGTGTTGAAATCTCAAAATCGTAATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTCCATGTGCAAGGTACTGTGTTGAAATCTCAAAATCGTAATTTA  400

seq1  AAAAAAAAAAGTAATATAATGGAAAATTGATCAAATCTAAACAAATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGTAATATAATGGAAAATTGATCAAATCTAAACAAATAAAA  450

seq1  CCTGTTAGAATTACACAGTATGTTGTTAATCTCTTAGTACTAACAAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTAGAATTACACAGTATGTTGTTAATCTCTTAGTACTAACAAATCA  500

seq1  CAGTTATGTGCAAAATTAAAACTAAGGGTGCCAGGCGTGATGGCACACGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATGTGCAAAATTAAAACTAAGGGTGCCAGGCGTGATGGCACACGC  550

seq1  CTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGA  600

seq1  GGCCAGCCTGGTCTACAGATTGAGTTCCAGGATCAGCCAGGACTACACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGGTCTACAGATTGAGTTCCAGGATCAGCCAGGACTACACAG  650

seq1  AGAAGCCCTGTCTCGAAAAAACAAAAAAAAAAAAAAAAAAAACTAAGGGC  700
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGAAGCCCTGTCTCGAAAAAAC-AAAAAAAAAAAAAAAAAAACTAAGGGC  699

seq1  ATCTGAGTGAAGAATTATAGAGAAACTCTACCACTATAACTTTTCTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGTGAAGAATTATAGAGAAACTCTACCACTATAACTTTTCTGAAA  749

seq1  GTACAAAAGCATTCAAAAACGAAAGAACTAG-CCTTTGATGCAATACAGA  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTACAAAAGCATTCAAAAACGAAAGAACTAGCCCTTTGATGCAATACAGA  799

seq1  AGTTTATTAAATTAAACCAAATGGCAATTTGACTA-GGGAGACTCAGT-G  847
      ||||||||||||||||||||||||||||||||||| |||||||||||| |
seq2  AGTTTATTAAATTAAACCAAATGGCAATTTGACTAGGGGAGACTCAGTGG  849

seq1  GATAAGCACTCGCCATGCAACAAGCATAAGGACTAGAATTCAGATCTCCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGCACTCGCCATGCAACAAGCATAAGGACTAGAATTCAGATCTCCA  899

seq1  GCA-CCCACACAAAGGCAAAGTCCCAGCACTCACAAGAGAGGTGGAACCC  946
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCACCCCACACAAAGGCAAAGTCCCAGCACTCAC-AGAGAGGTGGAACCC  948

seq1  AGCTAATCTGGTCAGCTCTACTTGCCAATCTGGTATGCTCTATGTTCACC  996
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGCTAATCTGGTCAGCTCTACTTGCCAATCTGGTATGCTCTATG-TCACC  997

seq1  AAAAGACACTGCCTCAGT-GAGGAAAGTGGAAAGCAATAGAGTAGACACC  1045
      ||||||||||| |||||| ||||||||||||||||| ||||||||||| |
seq2  AAAAGACACTG-CTCAGTGGAGGAAAGTGGAAAGCATTAGAGTAGACA-C  1045

seq1  TGACAGAGTGACAATAGAGTAG-TCTCAGGACTCCATGCGTTCTTACACA  1094
      |||||||||||||||||||||| |||||||||| ||||   ||| |||  
seq2  TGACAGAGTGACAATAGAGTAGTTCTCAGGACT-CATGGCGTCTAACA-G  1093

seq1  GGTGTGAACACACACGACATGTACACTCACATGTACCAGAAAAAGAAAAA  1144
      || |||||||||||||||||||||||   |||||| ||||| |||  |||
seq2  GGGGTGAACACACACGACATGTACACCTCCATGTA-CAGAATAAG--AAA  1140

seq1  AACCTGTCAATGCCTAAGTACCTAGTTAAATACATTGGA  1183
      | |||||| |||||  |||  |||||||| |||||||||
seq2  ACCCTGTC-ATGCCCTAGT--CTAGTTAATTACATTGGA  1176

seq1: chr9_53184931_53185998
seq2: B6Ng01-160D13.g_67_1122 (reverse)

seq1  ACGATAAACTCCCATTGTCAGCTGCGGCACCGGAGTGCCCCA-TCTCC-A  48
      ||||| |||||||| |||||||||| ||||| |||||||||| ||||| |
seq2  ACGATTAACTCCCA-TGTCAGCTGC-GCACC-GAGTGCCCCATTCTCCAA  47

seq1  GAGTCAGAACCTGAGCCACATCTCTATAGGTCAAAGAGTTTAAAAAACTT  98
      ||||||||  ||||| |||||||||||| ||||| |||||| ||||||||
seq2  GAGTCAGA--CTGAG-CACATCTCTATA-GTCAAGGAGTTT-AAAAACTT  92

seq1  TAACGTGCAAAGCGACCTGTTGTGTGCAAGCCACCCCCCGAAAGCCAGGG  148
      ||||||||||||||| ||| |||||||||||||||||| |||||||| ||
seq2  TAACGTGCAAAGCGA-CTG-TGTGTGCAAGCCACCCCCAGAAAGCCA-GG  139

seq1  GGCGCCACTTCTCAGAAAACACTTCCATTGACAATGCTCTGAGTCAACTG  198
      |||| ||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGCG-CAC-TCTCAGAAAACACTTCCATTGACAATGCTCTGAGTCAACTG  187

seq1  TCCCTCGAAGATGGCTCCTTCCCCAACAGTGGGTACAATCGAAGATTCAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCGAAGATGGCTCCTTCCCCAACAGTGGGTACAATCGAAGATTCAA  237

seq1  ATCTTCTTCCGAGCTTCCTGCATCTTACGAAAGTGAAAGCTGGACTTCGT  298
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTC-TCCGAGCTTCCTGCATCTTACGAAAGTGAAAGCTGGACTTCGT  286

seq1  ATAGCAATAGGACACGAGGTCCCAAGTCCACCTCATCCATTTCCAGGCCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAATAGGACACGAGGTCCCAAGTCCACCTCATCCATTTCCAGGCCT  336

seq1  ATTGACTATGGAATTTTTGGGAAAGAGCAGCAGTTGGCTTTCTTGGAGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTATGGAATTTTTGGGAAAGAGCAGCAGTTGGCTTTCTTGGAGAA  386

seq1  CGTCAAACGCTCACTCACACAGGGAAGATTATGGAAGCCAAGTTTCCTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAAACGCTCACTCACACAGGGAAGATTATGGAAGCCAAGTTTCCTCA  436

seq1  AGAACCCTGGCTTCCTCAAGGATGATGTTCTTAATGCTTCCAACCTGTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCTGGCTTCCTCAAGGATGATGTTCTTAATGCTTCCAACCTGTCA  486

seq1  CAGTCAGAGCTGGTAAATTCTCCAGCAGGTCAGGCGCCAGAAGATGGTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGAGCTGGTAAATTCTCCAGCAGGTCAGGCGCCAGAAGATGGTGT  536

seq1  ATTTCCAAGTGAGCCGCTTAACATCTACAAGGACGACCCAGTGGAGCCAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAGTGAGCCGCTTAACATCTACAAGGACGACCCAGTGGAGCCAC  586

seq1  TGGTCTCAGACTGGGACACAGACACAACCACAGACGACGAGTACTACCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCAGACTGGGACACAGACACAACCACAGACGACGAGTACTACCTG  636

seq1  GATGAAAAGGATAAAGAGTCAGAACTATGAGACTTTTGCGAGAAACGGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAAGGATAAAGAGTCAGAACTATGAGACTTTTGCGAGAAACGGCA  686

seq1  TAATATAACACTGTCATGTTTTGCTTTTTACCAAAAGCTTGTCGTGGAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAACACTGTCATGTTTTGCTTTTTACCAAAAGCTTGTCGTGGAAA  736

seq1  TTAGTCCAATAATTATAAACAGATAAAAGAGAGCTGGTTTGGGCAGCGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCAATAATTATAAACAGATAAAAGAGAGCTGGTTTGGGCAGCGTC  786

seq1  CAAATCCTCTCTACTTCATTCCCTTCTGAATTCTAAGAACAATGCTCACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCTCTCTACTTCATTCCCTTCTGAATTCTAAGAACAATGCTCACT  836

seq1  GCTTTTGAAGGGTTTTGTGTGTTTGTTTTCCCTGCCGTTTTTCCTGGTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGAAGGGTTTTGTGTGTTTGTTTTCCCTGCCGTTTTTCCTGGTGT  886

seq1  GTTTGAACTTTGTCCTCCTTGTCTCTTCCCCCAGCCTTATCTCCTAAGCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAACTTTGTCCTCCTTGTCTCTTCCCCCAGCCTTATCTCCTAAGCC  936

seq1  ACTTCCCAATGTTAGCACCATTTTCCTCCTCATAACTTCTCTTACCTCTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCAATGTTAGCACCATTTTCCTCCTCATAACTTCTCTTACCTCTA  986

seq1  ATCGTTTGGGGACATGTCCGACCTTGTGACTTGTTAATTACCCAGCACAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTTTGGGGACATGTCCGACCTTGTGACTTGTTAATTACCCAGCACAG  1036

seq1  CTAGCTGCAAAACTGAATTC  1068
      ||||||||||||||||||||
seq2  CTAGCTGCAAAACTGAATTC  1056