BAC Information

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BAC

Clone NameB6Ng01-160E17
Chromosome9 (Build37)
Map Location 65,241,071 - 65,374,782
singlet/doubletdoublet
Overlap geneRasl12, Ostb, Mtfmt, Spg21, Ankdd1a
Upstream geneMegf11, Rab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik
Downstream genePlekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160E17.bB6Ng01-160E17.g
ACCDH953709DH953710
length994554
definitionDH953709|Mus musculus domesticus DNA, BAC clone: B6Ng01-160E17, 5' end.DH953710|Mus musculus domesticus DNA, BAC clone: B6Ng01-160E17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,373,778 - 65,374,782)(65,241,071 - 65,241,630)
sequence
gaattccaggccagccacggttgtatatagagactgtcaaaatggggggg
ggggggacagagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa
agaaagagaaagaaaggaaggaaggaaggaaggaaagaagggggaaaagg
agaaagaaagactccttcaacacttctgtgttgagttcggtctctctaag
acgttctaccccagcaagcacagatccactcctttctctttaacagtctt
tcagcaccgctggtgtggccgcacctcttttatttggatgtgttcattct
attgatgcacccttggattgtttccagttctgtgctgcagtttaaaaaga
acaaaaaacaaaaaacaaccaaagagaacaaaacctcccttcccccacac
acctgcagagacgcagactctttttcctttaaattttaattagtattctg
cctccacgtatatctgtgtgagggtgtcagagctcctggaactgaaatta
cagacagtagggaactgccatgtggttggtgggatttgaactttggtcct
ttggaagggcagccaatgttcttacccagtgagtcagctctccagccctg
agacacaggttcttagagttgttataaagggtatgcactttattttattt
ttttccagggacggggatttgagcctccagccttcggtaaaaagactacc
atcaagctaagttccccatgttgctattttcatttgtacattacaaaata
ttttttttttttctgtcagcatctgtccagctgtttcaggacctggcacc
atgcttgttttcctaaggcttgtggtgttacagacttatttctcctctga
tgagcttagcatatctggtcgagtcttacaagaccctgtgacacagggca
aaaagcaacttgggaagaaccaaggatgaatcagtcaccgcttctgtgtg
aaaggtctagaggtggggatcctgctgctggaatcagctaattc
ccaagaagacctggtgaaaagtgtgagaaagagatcttgcccaagatctt
gcagcttgggacagacagccccaggctctcctgcagccctggtacttttc
caactgtccacagctttcctggttgaccatctaatactcggtcccaagat
gtcagatgaaaaggagtttgatgactgccttctccttccacttcactctg
gggaccaggctttgataggatggtgtatctgtgtgggaagtgttcatctg
gctcctggtttggggatggtggtggaacagctatgcattaccaaaaaggc
agcaggaggagggtaagagactcctcttccctgttaggacacagacatag
accccacagataaatctgcagacccacagcaaatgtgcttcccttaaggc
acactctagttcaccccatcaaaacaggcctggggtgtggggaccacttg
tgtgagcctgggaagccggaggcctggaggacactgccagaaatatctca
gatgctctgccccagggaccaggcaggaagaggggaaggagatgggggtg
gggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_65373778_65374782
seq2: B6Ng01-160E17.b_44_1037 (reverse)

seq1  GAATTAGCGTGATCTCAGCAGCAGGATCCCCACCCTCTATGACCTTTTCA  50
      |||||||| ||||  ||||||||||||||||| |||||| |||| |||||
seq2  GAATTAGC-TGATTCCAGCAGCAGGATCCCCA-CCTCTA-GACC-TTTCA  46

seq1  CCACAGAGGCGGTGACTGATTCATCCTTGTGTTCTTTCCCAAGTTGCTTT  100
       |||||| ||||||||||||||||||||| |||| |||||||||||||||
seq2  -CACAGAAGCGGTGACTGATTCATCCTTG-GTTC-TTCCCAAGTTGCTTT  93

seq1  TTTGGCCCTGGTGTCACAGGGCCTGGTAAGACTCGACCAGATTATGCTAA  150
      ||  ||||| ||||||||||| || |||||||||||||||| |||||| |
seq2  TT--GCCCT-GTGTCACAGGGTCTTGTAAGACTCGACCAGA-TATGCT-A  138

seq1  AGCTCATCAGA-GAGAAATAAGTCTGTAAACACCAACAGCCTTAGGAAAA  199
      ||||||||||| ||||||||||||||| |||||||  |||||||||||||
seq2  AGCTCATCAGAGGAGAAATAAGTCTGT-AACACCACAAGCCTTAGGAAAA  187

seq1  CAAGCATGGTGCCAGGTCCTGAAACAGCTGGACAGATGCTGACAGAAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATGGTGCCAGGTCCTGAAACAGCTGGACAGATGCTGACAGAAAAA  237

seq1  AAAAAATATTTTTGTAATGTACAAATGAAAATAGCAACATGGGGAACTTA  299
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATATTTTGTAATGTACAAATGAAAATAGCAACATGGGGAACTTA  287

seq1  GCTTGATGGTAGTCTTTTTACCGAAGGCTGGAGGCTC-AATCCCCGTCCC  348
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCTTGATGGTAGTCTTTTTACCGAAGGCTGGAGGCTCAAATCCCCGTCCC  337

seq1  TGGAAAAAAATAAAATAAAGTGCATACCCTTTATAACAACTCTAAGAACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAAAATAAAATAAAGTGCATACCCTTTATAACAACTCTAAGAACC  387

seq1  TGTGTCTCAGGGCTGGAGAGCTGACTCACTGGGTAAGAACATTGGCTGCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTCAGGGCTGGAGAGCTGACTCACTGGGTAAGAACATTGGCTGCC  437

seq1  CTTCCAAAGGACCAAAGTTCAAATCCCACCAACCACATGGCAGTTCCCTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAAGGACCAAAGTTCAAATCCCACCAACCACATGGCAGTTCCCTA  487

seq1  CTGTCTGTAATTTCAGTTCCAGGAGCTCTGACACCCTCACACAGATATAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTAATTTCAGTTCCAGGAGCTCTGACACCCTCACACAGATATAC  537

seq1  GTGGAGGCAGAATACTAATTAAAATTTAAAGGAAAAAGAGTCTGCGTCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGCAGAATACTAATTAAAATTTAAAGGAAAAAGAGTCTGCGTCTC  587

seq1  TGCAGGTGTGTGGGGGAAGGGAGGTTTTGTTCTCTTTGGTTGTTTTTTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTGTGTGGGGGAAGGGAGGTTTTGTTCTCTTTGGTTGTTTTTTGT  637

seq1  TTTTTGTTCTTTTTAAACTGCAGCACAGAACTGGAAACAATCCAAGGGTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTCTTTTTAAACTGCAGCACAGAACTGGAAACAATCCAAGGGTG  687

seq1  CATCAATAGAATGAACACATCCAAATAAAAGAGGTGCGGCCACACCAGCG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATAGAATGAACACATCCAAATAAAAGAGGTGCGGCCACACCAGCG  737

seq1  GTGCTGAAAGACTGTTAAAGAGAAAGGAGTGGATCTGTGCTTGCTGGGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAAAGACTGTTAAAGAGAAAGGAGTGGATCTGTGCTTGCTGGGGT  787

seq1  AGAACGTCTTAGAGAGACCGAACTCAACACAGAAGTGTTGAAGGAGTCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGTCTTAGAGAGACCGAACTCAACACAGAAGTGTTGAAGGAGTCTT  837

seq1  TCTTTCTCCTTTTCCCCCTTCTTTCCTTCCTTCCTTCCTTCCTTTCTTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCCTTTTCCCCCTTCTTTCCTTCCTTCCTTCCTTCCTTTCTTTC  887

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTG  937

seq1  TCCCCCCCCCCCCCATTTTGACAGTCTCTATATACAACCGTGGCTGGCCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCCCCCCCATTTTGACAGTCTCTATATACAACCGTGGCTGGCCT  987

seq1  GGAATTC  1005
      |||||||
seq2  GGAATTC  994

seq1: chr9_65241071_65241630
seq2: B6Ng01-160E17.g_64_623

seq1  GAATTCCCAAGAAGACCTGGTGAAAAGTGTGAGAAAGAGATCTTGCCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGAAGACCTGGTGAAAAGTGTGAGAAAGAGATCTTGCCCAA  50

seq1  GATCTTGCAGCTTGGGACAGACAGCCCCAGGCTCTCCTGCAGCCCTGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGCAGCTTGGGACAGACAGCCCCAGGCTCTCCTGCAGCCCTGGTA  100

seq1  CTTTTCCAACTGTCCACAGCTTTCCTGGTTGACCATCTAATACTCGGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCAACTGTCCACAGCTTTCCTGGTTGACCATCTAATACTCGGTCC  150

seq1  CAAGATGTCAGATGAAAAGGAGTTTGATGACTGCCTTCTCCTTCCACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGTCAGATGAAAAGGAGTTTGATGACTGCCTTCTCCTTCCACTTC  200

seq1  ACTCTGGGGACCAGGCTTTGATAGGATGGTGTATCTGTGTGGGAAGTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGGGACCAGGCTTTGATAGGATGGTGTATCTGTGTGGGAAGTGTT  250

seq1  CATCTGGCTCCTGGTTTGGGGATGGTGGTGGAACAGCTATGCATTACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGCTCCTGGTTTGGGGATGGTGGTGGAACAGCTATGCATTACCAA  300

seq1  AAAGGCAGCAGGAGGAGGGTAAGAGACTCCTCTTCCCTGTTAGGACACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAGCAGGAGGAGGGTAAGAGACTCCTCTTCCCTGTTAGGACACAG  350

seq1  ACATAGACCCCACAGATAAATCTGCAGACCCACAGCAAATGTGCTTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGACCCCACAGATAAATCTGCAGACCCACAGCAAATGTGCTTCCCT  400

seq1  TAAGGCACACTCTAGTTCACCCCATCAAAACAGGCCTGGGGTGTGGGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCACACTCTAGTTCACCCCATCAAAACAGGCCTGGGGTGTGGGGAC  450

seq1  CACTTGTGTGAGCCTGGGAAGCCGGAGGCCTGGAGGACACTGCCAGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTGTGAGCCTGGGAAGCCGGAGGCCTGGAGGACACTGCCAGAAAT  500

seq1  ATCTCAGATGCTCTGCCCCAGGGACCAGGCAGGAAGAGGGGAAGGAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGATGCTCTGCCCCAGGGACCAGGCAGGAAGAGGGGAAGGAGATG  550

seq1  GGGGTGGGGT  560
      ||||||||||
seq2  GGGGTGGGGT  560