BAC Information

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BAC

Clone NameB6Ng01-160O02
Chromosome9 (Build37)
Map Location 59,020,229 - 59,157,172
singlet/doubletdoublet
Overlap geneAdpgk
Upstream geneIslr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186, EG665330
Downstream geneBbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160O02.bB6Ng01-160O02.g
ACCDH954140DH954141
length1,0151,109
definitionDH954140|Mus musculus domesticus DNA, BAC clone: B6Ng01-160O02, 5' end.DH954141|Mus musculus domesticus DNA, BAC clone: B6Ng01-160O02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,156,506 - 59,157,172)(59,020,229 - 59,021,344)
sequence
gaattcatctgtgagactgcattctcactatggtaaactgttacatgacc
acatagcctttcaagctgagggagcatgcttttctaaacactttgtcttc
agcctgaacctgggcttcctcctgactgttatctctagaagcccctttct
atcctggctgaaccacagtccagtgaagtttctgtcacacctcttgtctt
agtcagggtttctattcctgcacaaacatcatgaccaagaagcaagctgg
ggaggaaagggtttattcagcttacacttccacattgctgttcatcacca
aaggaagtcaggactggaactcaagcaggtcaggaagcagaagctgatgc
agaggccatggagggatgttacttactggcttgcttcccctggcttgctc
agcctgctttcttatacaacccaagacaaccagcccagagatggtcccaa
ccacaaggggcccttcccccttgatcactaattgagaaaatgcctcacag
ctggatctcatggaggcacttccccaactgaagctcctttttctgtgata
actccagctgtgtcaagttgacacaaaactagccagtacactcctcaaga
ccaaactaacagactcaaaacataaaggagcattttgaaaaaaaatccct
agaaatcactacctttctagggattgacacaccctacttagacacctcaa
agccatcttcagtggcaaatgagcactaattttgtatgctgatttgtaca
gagagacaaagcttctgagtaagaaccacacctccccctctgctttccac
tttgatgtggatgtctccagtcagttctgagaactcttggtcctgccact
ttactgcctccccctaactcttgcctagatttcacttctgagatagtgaa
gaaccaacatgccctaaaacaacaaaaagtaggccaaatgtaggaaatga
caatttcaaagcactcggacattagcagagtacagtgatccatataaaac
acaaatgaacctgtt
gaattcaaagccatcatgggctgccgatcaagacccagcccaggaagact
gaaagttcaagtactgcctgagctacataggaagaatctgtccacccacc
ctacccccataccacacacacacacacacacacacacacacacacacaca
cacacacacacacacaaagatacctagtaattaagagacctctatgtagg
cagagaaagagcttgaagctcttctgctagggccatcatctttagtaagg
ccttaaagcaggttgtagaaatggtttttgcagctggctctatatccctg
actgggaaaagggggcttcacctcagcaggcagctcccccgacacacact
ttgctcttcacctctctttccctcttgcttgtgactctgatgttactctg
actctgaagccttctggccttggccagccctaatcctgcagtgttcccac
ctctcttggttcatcacactgtggtgacctcaggctgctgaaggttagac
tcatgagggtgatggagcgtcaccttctcccaactccgtggctcctgaga
ggtggtgggtcagtctcatatcaccatagaaaagctgataatatttttca
tgagtaccagagggaccctgagcctttgtgtgttgggaacagtgatctgc
acagcagatactgccctgggggactggggagatggttcagtatgcaaaca
catagaaatataaatatgaaaattgggtggttgctgtcatcccagtcgaa
acttttctgtgcagtgtatctaagtgaatgtcattttatttggaaacaag
atagcgtccaaagactgttttaagccttttaacttagatataagaataat
catgtgtcccttgcaaagcatgaggacctgaatctgttccctagagcaca
tgtaaaatgctgggcatggtgcatgtgcttgttagggccactgcagagag
gcagagataggagaatcccagccagccttgcctaattggtgacctccagg
tcatcaaagaccctggctcaaaagaagtagatgcattctgagatgaacac
caaattattgcctgcctcaaattttatatatataacatcatacatcattt
cttctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_59156506_59157172
seq2: B6Ng01-160O02.b_45_711 (reverse)

seq1  GAAAGGTAGTGATTTCTAGGGATTTTTTTTCAAAATGCTCCTTTATGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTAGTGATTTCTAGGGATTTTTTTTCAAAATGCTCCTTTATGTTT  50

seq1  TGAGTCTGTTAGTTTGGTCTTGAGGAGTGTACTGGCTAGTTTTGTGTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTGTTAGTTTGGTCTTGAGGAGTGTACTGGCTAGTTTTGTGTCAA  100

seq1  CTTGACACAGCTGGAGTTATCACAGAAAAAGGAGCTTCAGTTGGGGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACACAGCTGGAGTTATCACAGAAAAAGGAGCTTCAGTTGGGGAAGT  150

seq1  GCCTCCATGAGATCCAGCTGTGAGGCATTTTCTCAATTAGTGATCAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCATGAGATCCAGCTGTGAGGCATTTTCTCAATTAGTGATCAAGGG  200

seq1  GGAAGGGCCCCTTGTGGTTGGGACCATCTCTGGGCTGGTTGTCTTGGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGCCCCTTGTGGTTGGGACCATCTCTGGGCTGGTTGTCTTGGGTT  250

seq1  GTATAAGAAAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCCAGTAAGTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGAAAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCCAGTAAGTAAC  300

seq1  ATCCCTCCATGGCCTCTGCATCAGCTTCTGCTTCCTGACCTGCTTGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCCATGGCCTCTGCATCAGCTTCTGCTTCCTGACCTGCTTGAGTT  350

seq1  CCAGTCCTGACTTCCTTTGGTGATGAACAGCAATGTGGAAGTGTAAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCTGACTTCCTTTGGTGATGAACAGCAATGTGGAAGTGTAAGCTG  400

seq1  AATAAACCCTTTCCTCCCCAGCTTGCTTCTTGGTCATGATGTTTGTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCCTTTCCTCCCCAGCTTGCTTCTTGGTCATGATGTTTGTGCAG  450

seq1  GAATAGAAACCCTGACTAAGACAAGAGGTGTGACAGAAACTTCACTGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGAAACCCTGACTAAGACAAGAGGTGTGACAGAAACTTCACTGGAC  500

seq1  TGTGGTTCAGCCAGGATAGAAAGGGGCTTCTAGAGATAACAGTCAGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTCAGCCAGGATAGAAAGGGGCTTCTAGAGATAACAGTCAGGAGG  550

seq1  AAGCCCAGGTTCAGGCTGAAGACAAAGTGTTTAGAAAAGCATGCTCCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAGGTTCAGGCTGAAGACAAAGTGTTTAGAAAAGCATGCTCCCTC  600

seq1  AGCTTGAAAGGCTATGTGGTCATGTAACAGTTTACCATAGTGAGAATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGAAAGGCTATGTGGTCATGTAACAGTTTACCATAGTGAGAATGCA  650

seq1  GTCTCACAGATGAATTC  667
      |||||||||||||||||
seq2  GTCTCACAGATGAATTC  667

seq1: chr9_59020229_59021344
seq2: B6Ng01-160O02.g_67_1175

seq1  GAATTCAAAGCCATCATGGGCTGCCGATCAAGACCCAGCCCAGGAAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCCATCATGGGCTGCCGATCAAGACCCAGCCCAGGAAGACT  50

seq1  GAAAGTTCAAGTACTGCCTGAGCTACATAGGAAGAATCTGTCCACCCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTCAAGTACTGCCTGAGCTACATAGGAAGAATCTGTCCACCCACC  100

seq1  CTACCCCCATACCACACACACACACACACACACACACACACACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCCATACCACACACACACACACACACACACACACACACACACACA  150

seq1  CACACACACACACACAAAGATACCTAGTAATTAAGAGACCTCTATGTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACAAAGATACCTAGTAATTAAGAGACCTCTATGTAGG  200

seq1  CAGAGAAAGAGCTTGAAGCTCTTCTGCTAGGGCCATCATCTTTAGTAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAGAGCTTGAAGCTCTTCTGCTAGGGCCATCATCTTTAGTAAGG  250

seq1  CCTTAAAGCAGGTTGTAGAAATGGTTTTTGCAGCTGGCTCTATATCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAGCAGGTTGTAGAAATGGTTTTTGCAGCTGGCTCTATATCCCTG  300

seq1  ACTGGGAAAAGGGGGCTTCACCTCAGCAGGCAGCTCCCCCGACACACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAAAAGGGGGCTTCACCTCAGCAGGCAGCTCCCCCGACACACACT  350

seq1  TTGCTCTTCACCTCTCTTTCCCTCTTGCTTGTGACTCTGATGTTACTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTCACCTCTCTTTCCCTCTTGCTTGTGACTCTGATGTTACTCTG  400

seq1  ACTCTGAAGCCTTCTGGCCTTGGCCAGCCCTAATCCTGCAGTGTTCCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAAGCCTTCTGGCCTTGGCCAGCCCTAATCCTGCAGTGTTCCCAC  450

seq1  CTCTCTTGGTTCATCACACTGTGGTGACCTCAGGCTGCTGAAGGTTAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTGGTTCATCACACTGTGGTGACCTCAGGCTGCTGAAGGTTAGAC  500

seq1  TCATGAGGGTGATGGAGCGTCACCTTCTCCCAACTCCGTGGCTCCTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGGGTGATGGAGCGTCACCTTCTCCCAACTCCGTGGCTCCTGAGA  550

seq1  GGTGGTGGGTCAGTCTCATATCACCATAGAAAAGCTGATAATATTTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGGTCAGTCTCATATCACCATAGAAAAGCTGATAATATTTTTCA  600

seq1  TGAGTACCAGAGGGACCCTGAGCCTTTGTGTGTTGGGAACAGTGATCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACCAGAGGGACCCTGAGCCTTTGTGTGTTGGGAACAGTGATCTGC  650

seq1  ACAGCAGATACTGCCCTGGGGGACTGGGGAGATGGTTCAGTATGCAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGATACTGCCCTGGGGGACTGGGGAGATGGTTCAGTATGCAAACA  700

seq1  CATAGAAATATAAATATGAAAATT-GGTGGTTGCTGTCATCCCAGTCGAA  749
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CATAGAAATATAAATATGAAAATTGGGTGGTTGCTGTCATCCCAGTCGAA  750

seq1  AC-TTTCTGTGCAGTGTATCTAAGTGAATGTCATTTTATTTGGAAACAAG  798
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTGTGCAGTGTATCTAAGTGAATGTCATTTTATTTGGAAACAAG  800

seq1  ATAGCGTCCAAAGACTGTTTTAAGCCTTTTAACTTAGATATAAGAATAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCGTCCAAAGACTGTTTTAAGCCTTTTAACTTAGATATAAGAATAAT  850

seq1  CATGTGTCCCTTGCAAAGCATGAGGACCTGAATCTGTTCCCTAGAGCACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTCCCTTGCAAAGCATGAGGACCTGAATCTGTTCCCTAGAGCACA  900

seq1  TGTAAAAATGCTGGGCATGGTGGCATGTGCTTGTTAGGGCCACTGCAGGA  948
      ||| ||||||||||||||||| ||||||||||||||||||||||||| ||
seq2  TGT-AAAATGCTGGGCATGGT-GCATGTGCTTGTTAGGGCCACTGCA-GA  947

seq1  GAGGCAGAGATAGGAGAATCCCAGCCAGCCTTGCCTAATTGGTGACCTCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGATAGGAGAATCCCAGCCAGCCTTGCCTAATTGGTGACCTCC  997

seq1  AGGTCAATCAAAGACCCTGGCTCAAAAGAAGTAGATGGCATTTCTGAGGA  1048
      ||||| |||||||||||||||||||||||||||||| ||| |||||| ||
seq2  AGGTC-ATCAAAGACCCTGGCTCAAAAGAAGTAGAT-GCA-TTCTGA-GA  1043

seq1  TGACACCCAAAATTATTGCCTGGCCTCCACATTTATATATTATACATTCA  1098
      ||| || | |||||||||||| ||||| |  |||||||| ||||   |||
seq2  TGA-ACACCAAATTATTGCCT-GCCTCAAATTTTATATA-TATAACATCA  1090

seq1  TACATTCATTC-TCTCTCT  1116
      |||||   ||| |||||||
seq2  TACATCATTTCTTCTCTCT  1109