BAC Information

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BAC

Clone NameB6Ng01-161A23
Chromosome9 (Build37)
Map Location 32,919,070 - 32,920,266
singlet/doubletsinglet
Overlap genenone
Upstream geneGrit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161A23.bB6Ng01-161A23.g
ACCDH954276DH954277
length1,1571,168
definitionDH954276|Mus musculus domesticus DNA, BAC clone: B6Ng01-161A23, 5' end.DH954277|Mus musculus domesticus DNA, BAC clone: B6Ng01-161A23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaccacagcagttctagacttcagtccattggttggttgtaaat
atgtgtctgtttcagtacgatgcttgttgggcctctccaaaggcagtcat
gctaggctcctgtctgtaagcacaccatagcatcaataatagtatcaggc
cttggagcctgccctcaagctgggttccaatttggcctggtcactggacc
ttctctccctcagtctccactttggtcccagcagctattttattcaggaa
caattctgggtcatgtacttttgtgatgttcttctctcatgtcttttcca
atttcctgcccccctcctccccttgagtagcgccccctgattccgataag
ccatggatatttttgttggccttctatttcttcttcctcagctctgcaaa
tgttttttttaatacatttttccctttaacttcccctttaactttcccct
gttatacatataaaaattaaattctgatatccacaaatggtaaagaaaca
tgcactatttatgcttctaagcctgggatactttgcttgagacaatattc
tccagttacatactttttttttttctgaagatttcatgattctttaaggc
caaatccaatctattctgcgtataaggcacaacttcttatccaactgttg
atggacagctagaccacttccatttctaaccagtgtgactagtaaagcga
gtgtgcaggggtcactgtggcagaatgtggagtcccttagtacacagcca
gtgttgtataatgtgtcaggcggtggctctatttctaactttgtgggaaa
tagtttacattggccacacgggtttccattggaaagaagtttactctttc
ctcacatcttccctagtcatttgtttctttttcttactgtaactattaag
taaaaagtatgtacgactctaaagcacatgtattgaaattccctgatgca
taggatatggatggtctcagattatgggtgcattcctcattttttttttt
gaaactgttgttactcattgctttttttttaataggaagattggttgttg
ttttgttgtggatgcttgggttgtccatagtttatttgagcctttgactc
gataggctgactagggaagttggacttagtgaattccagtggtctctcac
aaaaaag
gaattccagggccaagaagtgggagtgggtagataggggagcagggcaga
gggagggcatagggaactttcgggatagcatttggaatgtatataaagaa
aatatctaaaataaataaataaataaataaataaataaataaaagttttt
aaaaagacatattacacaccaggaaaaaaatcaatttttaataaaagaaa
ataaaagatatcaattggaaaaaaaaagagtgcatggcagaacttgttgc
agcacattttatattttcttagtcacaataaaacctatgtgaacaggttt
gagcctcaaagcaccagagataagactgcaccttgcagcctatgaaattg
gacaaaagaattttagaaaacagaattttgaaacacacaaaacaatcatt
tggaatgacccactaactcaactttcttgaattactgagactaatagctg
ctccatcctcagaaacatctgaattctaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaagtgcaatacaggggagacacaattaaccaatactgactgag
ggaatgataccttctatttcttttttaaaaatatttacacccttatgtat
tgattgtctttttcattttaatatttactttatgtgcctttccgaaaccc
gattcacagtatttctcataactctgcatacaggccttcctcctccatct
tttcttcactccctttctcctttcccatttccttaatctattcttgaaat
actaaatactctcagaataaacactaccttatcccccagccagtaccaca
tgatactatgtttgaatctttataaggaaccacaaggggagggaaagtat
tttcctacagttaacacagagggctactggcaaaccaatattttctgtta
ctgcaattgcaatccataatcagattccagaaatagaatcaaggaaggct
tgttgtaaaaccaaaggaacaaactaaacacccctctcagaagacgatgg
tggaggggtcatcttaaaactggaagacatatcatccatggatgccaact
aagcagagaacaccctctcccaccccaagaaaatttccatctcttaggct
ttactctcatcgaaacgatgatgctgactggaaaaaaggtcagtagggac
ccctttgtgtagggaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_32919070_32920266
seq2: B6Ng01-161A23.g_63_1230

seq1  GAATTCCAGGGCCAAGAAGTGGGAGTGGGTAGATAGGGGAGCAGGGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGCCAAGAAGTGGGAGTGGGTAGATAGGGGAGCAGGGCAGA  50

seq1  GGGAGGGCATAGGGAACTTTCGGGATAGCATTTGGAATGTATATAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGCATAGGGAACTTTCGGGATAGCATTTGGAATGTATATAAAGAA  100

seq1  AATATCTAAAATAAATAAATAAATAAATAAATAAATAAATAAAAGTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTAAAATAAATAAATAAATAAATAAATAAATAAATAAAAGTTTTT  150

seq1  AAAAAGACATATTACACACCAGGAAAAAAATCAATTTTTAATAAAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACATATTACACACCAGGAAAAAAATCAATTTTTAATAAAAGAAA  200

seq1  ATAAAAGATATCAATTGGAAAAAAAAAGAGTGCATGGCAGAACTTGTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGATATCAATTGGAAAAAAAAAGAGTGCATGGCAGAACTTGTTGC  250

seq1  AGCACATTTTATATTTTCTTAGTCACAATAAAACCTATGTGAACAGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATTTTATATTTTCTTAGTCACAATAAAACCTATGTGAACAGGTTT  300

seq1  GAGCCTCAAAGCACCAGAGATAAGACTGCACCTTGCAGCCTATGAAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCAAAGCACCAGAGATAAGACTGCACCTTGCAGCCTATGAAATTG  350

seq1  GACAAAAGAATTTTAGAAAACAGAATTTTGAAACACACAAAACAATCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAGAATTTTAGAAAACAGAATTTTGAAACACACAAAACAATCATT  400

seq1  TGGAATGACCCACTAACTCAACTTTCTTGAATTACTGAGACTAATAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGACCCACTAACTCAACTTTCTTGAATTACTGAGACTAATAGCTG  450

seq1  CTCCATCCTCAGAAACATCTGAATTCTAAAAAAAAAAAAAAAAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCCTCAGAAACATCTGAATTCTAAAAAAAAAAAAAAAAAAAAAAA  500

seq1  AAAAAAAAAAAGTCAATACAGGGGAGACACAATTAACCAATACTGACTGA  550
      |||||||||  | |||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGTG-CAATACAGGGGAGACACAATTAACCAATACTGACTGA  549

seq1  GGGAATGATACCTTCTATTTC-TTCTTAAAAATATTTACACCCTTATGTA  599
      ||||||||||||||||||||| || |||||||||||||||||||||||||
seq2  GGGAATGATACCTTCTATTTCTTTTTTAAAAATATTTACACCCTTATGTA  599

seq1  TTGATTGTCTTTTTCATTTTAATATTTACTTTATGTGCCTTTCCGAAACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGTCTTTTTCATTTTAATATTTACTTTATGTGCCTTTCCGAAACC  649

seq1  CGATTCACAGTATTTCTCATAACTCTGCATACAGGCCTTCCT-CTCCATC  698
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CGATTCACAGTATTTCTCATAACTCTGCATACAGGCCTTCCTCCTCCATC  699

seq1  -TTTCTTCACTCCCTTTCTCCTTTCCCATTTCCTTAATCTATTCTTGAAA  747
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCACTCCCTTTCTCCTTTCCCATTTCCTTAATCTATTCTTGAAA  749

seq1  TACT-AATACTCTCAGAATAAACACTACC-TATCCCCCAGCCAGTACCAC  795
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  TACTAAATACTCTCAGAATAAACACTACCTTATCCCCCAGCCAGTACCAC  799

seq1  ATGATACTATGTTTGAATC-TTAT-AGGAAACACAA-GGGAGGGAAAGTA  842
      ||||||||||||||||||| |||| ||||| ||||| |||||||||||||
seq2  ATGATACTATGTTTGAATCTTTATAAGGAACCACAAGGGGAGGGAAAGTA  849

seq1  TTTTACTACAGTTAACACAGA-GGCTACT-GCAAACCAATA-TATCTGTT  889
      |||| |||||||||||||||| ||||||| ||||||||||| | ||||||
seq2  TTTTCCTACAGTTAACACAGAGGGCTACTGGCAAACCAATATTTTCTGTT  899

seq1  ACTGCAATTGCAATCCATAATCAGATTCCAG-AATAGATTCAAAGAAGGC  938
      ||||||||||||||||||||||||||||||| |||||| |||| ||||||
seq2  ACTGCAATTGCAATCCATAATCAGATTCCAGAAATAGAATCAAGGAAGGC  949

seq1  -TGTTGTAAAACAAAAGAAACAAAACAAAACAACACCCCCCAGAAGACAG  987
       ||||||||||| |||| ||| |||| |||| || || | |||||||| |
seq2  TTGTTGTAAAACCAAAGGAAC-AAACTAAAC-ACCCCTCTCAGAAGAC-G  996

seq1  ATGGTGAAGGGGTCATCATAAAAACTGGAAGACATATCATCCCAATAGAT  1037
      |||||| |||||||||| | ||||||||||||||||||||||  || |||
seq2  ATGGTGGAGGGGTCATC-TTAAAACTGGAAGACATATCATCC--ATGGAT  1043

seq1  GCACAAAACATAAGCAAGAGAAACACACACACACACACACACAAAAGAAA  1087
      || |||    ||||| |||||     |||| | | | ||| | ||   ||
seq2  GC-CAA---CTAAGC-AGAGA-----ACACCCTCTCCCACCCCAA--GAA  1081

seq1  AATATCCCACATCTCCATAAGCTTATAACTTCTCAATACCAGAAAACAGA  1137
      ||| ||   ||||| | || |||| ||   |||||      ||||     
seq2  AATTTC---CATCT-CTTAGGCTT-TA--CTCTCA----TCGAAA----C  1116

seq1  GATGAAATAGCTGAACTGGAAAAAAAAAAGGTCAGTAGAGGACCACTTT-  1186
      |||||    |||| |||||    ||||||||||||||| ||||| |||| 
seq2  GATGA---TGCTG-ACTGG----AAAAAAGGTCAGTAG-GGACCCCTTTG  1157

seq1  TGTAGGGAATA  1197
      |||||||||||
seq2  TGTAGGGAATA  1168