BAC Information

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BAC

Clone NameB6Ng01-161G12
Chromosome9 (Build37)
Map Location 92,217,622 - 92,387,199
singlet/doubletdoublet
Overlap gene1700057G04Rik, LOC666850, Plscr4
Upstream geneZic1, Zic4, LOC331000, Plscr1, Plscr2
Downstream genePlod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114, LOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161G12.bB6Ng01-161G12.g
ACCDH954525DH954526
length1,1461,145
definitionDH954525|Mus musculus domesticus DNA, BAC clone: B6Ng01-161G12, 5' end.DH954526|Mus musculus domesticus DNA, BAC clone: B6Ng01-161G12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,386,034 - 92,387,199)(92,217,622 - 92,218,764)
sequence
gaattctgctgttagagaagtattagcatcatgaacactgaagtatggag
cacagaaatatgaagcattctgactttcactatcaacgtgatgcaaagtg
ctagaatggggtgtgggtgggcaaaggacaggcttatacgtgagctctca
gaattctgtttatctggtttatatgcaaaatacaagatgtcatacagaaa
tcatgtatgtctagttaaaattagaggtacattttaacatttaaggtagt
ttttagtcaagaactcatgattttttttaaataaaaactcaacagcagca
agtagataactgaggagaacaatctttctcataaaaacattagtataatt
aaagctgaagcacctgctatttcaaaaaggcctgttggctacatctcttc
tctcaggataattcaacccaagagcacttaatcctttttaaataaactct
aagagaatatatccattaaaaaaaaaacccatacagcatctatgtgtagg
tcgacagcaaaggcatgaaactcattaattaaatcagtgattcatacata
cactgtccttagtacaagtctgctggtcttccatagtcctcattgataat
ctggagaaaatatggaagcaacaaatttactgtgtcttcttactgattgc
atataatgagttgtttaccacgcaaagcgtcaccagtattaaagcaatga
caggatttacatattcagctttaataactgttggtcacaaggacatcctg
gtcattagatggatttcgaaaaaaaaaaatagcaagtgagatacaaaaat
acaataggtaattccagacatcagtataaacagttagataaaaggcaagt
gtaaatacgagagtccacactaattctgctgagtaagcaaacacacaaca
tgtgtagatgccaagaacttatttggctgtagctctgatcaactttccct
ggtaccctcatctacttcatatacaggtagctcacatgcccagttgaggt
atgaagaaatatgcatagaaaatataaactgctataaagagatacattta
attttgtataaaataaattcccactggagacttagaactgtatgcatgtt
gcgaaatgatgttctgtgcaacagaacacaccaaccccaaacattt
gaattctatgttgaaaaggaaaattccactgtttattcttgatttcctta
gtgcacaatagttcctgctaaataataagttaaaatttattacaagagga
aaaaactgaagatcctatatttagaaatagtacaaagtttctattcataa
ccaaaccaagaagaaacatgtttttatttcagaaggttgttatctgctta
ctttatgtctttcttctatataatatttctaagaaagcaactttgcattc
caataaaaatcataggaaaatattatacatacttacatctgaatcacccc
tcttaaatgtaaaactaaaacacaaagcatatttgaaagataatactatt
ctatcaatttctaaacaataagcagtaaaggaataaagaattacataggc
atatttgagaggagacacaagattgtcatgattttagattaccgctttac
ttttagaaaagtacatttataatttattataatacaataacatttataat
acaataagatttacaatatactttgaactattcatttaaaataatatcta
ttgaaagttcaacgtcaacttttcatttaaaatgcaatggtactattaaa
aatgctacaggataaatatcaagagaaatattcaagagctccacataaaa
agcatgattgataacactgtggagagttatggtggctaaccagttgcccc
aaacttatttcttccctctacaaatatccctaaagtggtatgtctgatat
gttttgagatgagtggccatggaacaacactggaaatcagcaagtgaacc
actgtggcttggtcagatgtagtaacctatgacaacgcagaaagttgtga
gaaagagaagaaaaaatatctaccacttacaccccaatggccagagacgt
taaagatctcctttgcagaacttatgaataaaagttctagcacattgttg
tgtagatactactctacctggcaaatgttactactcccatcacagaagta
gtcataatggtgagttacacattatccttttatccataataacagtggcc
cgagaatgtcatatctttcctgttcatggttcatcaaagattgtaaatct
gtctgactggaactcaggttcagagttttagagaacatataaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_92386034_92387199
seq2: B6Ng01-161G12.b_46_1191 (reverse)

seq1  AAATGTTTTGTGTGTGTGTGTGTGTCTGTGTGCACCAGAACATCATTCTG  50
      |||||||| | ||  ||||||   ||||| |||| ||||||||||||  |
seq2  AAATGTTTGGGGTTGGTGTGT---TCTGT-TGCA-CAGAACATCATTTCG  45

seq1  CAACATGCATACAAGTTCCTAAAGTTCTCAGTGGGGAATTTTATTTTATT  100
      |||||||||||| |||||   ||||   |||||||  | ||||||||| |
seq2  CAACATGCATAC-AGTTC--TAAGTCTCCAGTGGG--AATTTATTTTA-T  89

seq1  ACAAAATAAAATGTATTCTCTTTATAGGCAGTTTATATTTTCTATGCATA  150
      ||||||| ||||||| |||||||||| |||||||||||||||||||||||
seq2  ACAAAATTAAATGTA-TCTCTTTATA-GCAGTTTATATTTTCTATGCATA  137

seq1  TTTCTTCATACCCTCAACTGGGCAATGTGGAGCTACCTGTATATGAAGGT  200
      |||||||||| |||||||||||| |||| |||||||||||||||||| ||
seq2  TTTCTTCATA-CCTCAACTGGGC-ATGT-GAGCTACCTGTATATGAA-GT  183

seq1  AGGATGAGGGTACCAGGGAAAGTTGATCAGAGCTACAGCCAAATAAGTTC  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GATGAGGGTACCAGGGAAAGTTGATCAGAGCTACAGCCAAATAAGTTC  232

seq1  TTGGCATCTTACACATGTTGTGTGTTTGCTTACTCAGCAGAATTAGTGTG  300
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATC-TACACATGTTGTGTGTTTGCTTACTCAGCAGAATTAGTGTG  281

seq1  GACTCTCGTATTTACACTTGCCTTTTATCTAACTGTTTATACTGATGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCGTATTTACACTTGCCTTTTATCTAACTGTTTATACTGATGTCT  331

seq1  GGAATTACCTATTGTATTTTTGTATCTCACTTGCTATTTTTTTTTTTCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTACCTATTGTATTTTTGTATCTCACTTGCTATTTTTTTTTTTCGA  381

seq1  AATCCATCTAATGACCAGGATGTCCTTGTGACCAACAGTTTATTAAAGCT  450
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AATCCATCTAATGACCAGGATGTCCTTGTGACCAACAG-TTATTAAAGCT  430

seq1  GAATATGTAAATCCTGTCATTGCTTTAATACTGGTGACGCTTTGCGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGTAAATCCTGTCATTGCTTTAATACTGGTGACGCTTTGCGTGGT  480

seq1  AAACAACTCATTATATGCAATCAGTAAGAAGACACAGTAAATTTGTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACTCATTATATGCAATCAGTAAGAAGACACAGTAAATTTGTTGCT  530

seq1  TCCATATTTTCTCCAGATTATCAATGAGGACTATGGAAGACCAGCAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATTTTCTCCAGATTATCAATGAGGACTATGGAAGACCAGCAGACT  580

seq1  TGTACTAAGGACAGTGTATGTATGAATCACTGATTTAATTAATGAGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTAAGGACAGTGTATGTATGAATCACTGATTTAATTAATGAGTTTC  630

seq1  ATGCCTTTGCTGTCGACCTACACATAGATGCTGTATGGGTTTTTTTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTGCTGTCGACCTACACATAGATGCTGTATGGGTTTTTTTTTTA  680

seq1  ATGGATATATTCTCTTAGAGTTTATTTAAAAAGGATTAAGTGCTCTTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATATATTCTCTTAGAGTTTATTTAAAAAGGATTAAGTGCTCTTGGG  730

seq1  TTGAATTATCCTGAGAGAAGAGATGTAGCCAACAGGCCTTTTTGAAATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTATCCTGAGAGAAGAGATGTAGCCAACAGGCCTTTTTGAAATAG  780

seq1  CAGGTGCTTCAGCTTTAATTATACTAATGTTTTTATGAGAAAGATTGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCTTCAGCTTTAATTATACTAATGTTTTTATGAGAAAGATTGTTC  830

seq1  TCCTCAGTTATCTACTTGCTGCTGTTGAGTTTTTATTTAAAAAAAATCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGTTATCTACTTGCTGCTGTTGAGTTTTTATTTAAAAAAAATCAT  880

seq1  GAGTTCTTGACTAAAAACTACCTTAAATGTTAAAATGTACCTCTAATTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTTGACTAAAAACTACCTTAAATGTTAAAATGTACCTCTAATTTT  930

seq1  AACTAGACATACATGATTTCTGTATGACATCTTGTATTTTGCATATAAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGACATACATGATTTCTGTATGACATCTTGTATTTTGCATATAAAC  980

seq1  CAGATAAACAGAATTCTGAGAGCTCACGTATAAGCCTGTCCTTTGCCCAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAACAGAATTCTGAGAGCTCACGTATAAGCCTGTCCTTTGCCCAC  1030

seq1  CCACACCCCATTCTAGCACTTTGCATCACGTTGATAGTGAAAGTCAGAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCCCATTCTAGCACTTTGCATCACGTTGATAGTGAAAGTCAGAAT  1080

seq1  GCTTCATATTTCTGTGCTCCATACTTCAGTGTTCATGATGCTAATACTTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATATTTCTGTGCTCCATACTTCAGTGTTCATGATGCTAATACTTC  1130

seq1  TCTAACAGCAGAATTC  1166
      ||||||||||||||||
seq2  TCTAACAGCAGAATTC  1146

seq1: chr9_92217622_92218764
seq2: B6Ng01-161G12.g_70_1214

seq1  GAATTCTATGTTGAAAAGGAAAATTCCACTGTTTATTCTTGATTTCCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTTGAAAAGGAAAATTCCACTGTTTATTCTTGATTTCCTTA  50

seq1  GTGCACAATAGTTCCTGCTAAATAATAAGTTAAAATTTATTACAAGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAATAGTTCCTGCTAAATAATAAGTTAAAATTTATTACAAGAGGA  100

seq1  AAAAACTGAAGATCCTATATTTAGAAATAGTACAAAGTTTCTATTCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTGAAGATCCTATATTTAGAAATAGTACAAAGTTTCTATTCATAA  150

seq1  CCAAACCAAGAAGAAACATGTTTTTATTTCAGAAGGTTGTTATCTGCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCAAGAAGAAACATGTTTTTATTTCAGAAGGTTGTTATCTGCTTA  200

seq1  CTTTATGTCTTTCTTCTATATAATATTTCTAAGAAAGCAACTTTGCATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTCTTTCTTCTATATAATATTTCTAAGAAAGCAACTTTGCATTC  250

seq1  CAATAAAAATCATAGGAAAATATTATACATACTTACATCTGAATCACCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAAATCATAGGAAAATATTATACATACTTACATCTGAATCACCCC  300

seq1  TCTTAAATGTAAAACTAAAACACAAAGCATATTTGAAAGATAATACTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAATGTAAAACTAAAACACAAAGCATATTTGAAAGATAATACTATT  350

seq1  CTATCAATTTCTAAACAATAAGCAGTAAAGGAATAAAGAATTACATAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAATTTCTAAACAATAAGCAGTAAAGGAATAAAGAATTACATAGGC  400

seq1  ATATTTGAGAGGAGACACAAGATTGTCATGATTTTAGATTACCGCTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGAGAGGAGACACAAGATTGTCATGATTTTAGATTACCGCTTTAC  450

seq1  TTTTAGAAAAGTACATTTATAATTTATTATAATACAATAACATTTATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAAAAGTACATTTATAATTTATTATAATACAATAACATTTATAAT  500

seq1  ACAATAAGATTTACAATATACTTTGAACTATTCATTTAAAATAATATCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAGATTTACAATATACTTTGAACTATTCATTTAAAATAATATCTA  550

seq1  TTGAAAGTTCAACGTCAACTTTTCATTTAAAATGCAATGGTACTATTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGTTCAACGTCAACTTTTCATTTAAAATGCAATGGTACTATTAAA  600

seq1  AATGCTACAGGATAAATATCAAGAGAAATATTCAAGAGCTCCACATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTACAGGATAAATATCAAGAGAAATATTCAAGAGCTCCACATAAAA  650

seq1  AGCATGATTGATAACACTGTGGAGAGTTATGGTGGCTAACCAGTTGCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGATTGATAACACTGTGGAGAGTTATGGTGGCTAACCAGTTGCCCC  700

seq1  AAACTTATTTCTTCCCTCTACAAATATCCCTAAAGTGGTATGTCTGATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATTTCTTCCCTCTACAAATATCCCTAAAGTGGTATGTCTGATAT  750

seq1  GTTTTGAGATGAGTGGCCATGGAACAACACTGGAAATCAGCAAGTGAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGATGAGTGGCCATGGAACAACACTGGAAATCAGCAAGTGAACC  800

seq1  ACTGTGGCTTGGTCAGATGTAGTAACCTATGACAACGCAGAAAGTTGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGCTTGGTCAGATGTAGTAACCTATGACAACGCAGAAAGTTGTGA  850

seq1  GACAGAGAAGAAAAAATATCTACCACTTACACCCCAATGGCCAGAGACGT  900
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAAGAAAAAATATCTACCACTTACACCCCAATGGCCAGAGACGT  900

seq1  TAAAGATCTCCTTTGCAGAAC-TATGAATAAAAGTTCTAGCAACATTGTT  949
      ||||||||||||||||||||| ||||||||||||||||||| |||||| |
seq2  TAAAGATCTCCTTTGCAGAACTTATGAATAAAAGTTCTAGC-ACATTG-T  948

seq1  TGTGTAGATACTACTCTACCTGGCAAATGTAACTACTCCCATCACAGAAG  999
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTGTAGATACTACTCTACCTGGCAAATGTTACTACTCCCATCACAGAAG  998

seq1  TAGTCATAAT-GTGAGTTACACATTATCC-TTTATCCATAAT-ACAGTTG  1046
      |||||||||| |||||||||||||||||| |||||||||||| ||||| |
seq2  TAGTCATAATGGTGAGTTACACATTATCCTTTTATCCATAATAACAGTGG  1048

seq1  CCCGAGATGTTCATATCTTTCGTGTTTCATGGTTCATC-AAGATTGTAAA  1095
      |||||||   ||||||||||| || ||||||||||||| |||||||||||
seq2  CCCGAGAATGTCATATCTTTCCTG-TTCATGGTTCATCAAAGATTGTAAA  1097

seq1  TCTGTCTGACTGGACTCCAGTTTTCAGAGTTTTTAGAGA--CTATAAAAA  1143
      ||||||||||||||   |||  ||||||| |||||||||   ||||||||
seq2  TCTGTCTGACTGGAACTCAG-GTTCAGAG-TTTTAGAGAACATATAAAAA  1145