BAC Information

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BAC

Clone NameB6Ng01-161G19
Chromosome9 (Build37)
Map Location 29,031,875 - 29,145,746
singlet/doubletdoublet
Overlap geneHnt
Upstream geneOpcml, LOC625222
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161G19.bB6Ng01-161G19.g
ACCDH954539DH954540
length1,1141,044
definitionDH954539|Mus musculus domesticus DNA, BAC clone: B6Ng01-161G19, 5' end.DH954540|Mus musculus domesticus DNA, BAC clone: B6Ng01-161G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,144,634 - 29,145,746)(29,031,875 - 29,032,916)
sequence
gaattctctcttgtgatttatgtcactcaaattggtttgtgatgatttaa
ttatgtggttaaaaaaaaatccaacaacaaaaaattgtaaaagccaatag
gtagctaccccagccccagttttcaaggttctctgaatatggactgagat
ttcacatcatttcagaaaacaatgggaaaccacctcaataatttacatat
ttactttgcaaatatctgttgaaccaatgcaatgttaccaagcagctttg
tgtgttctgggtatattaatagaaaggggatttaagaggttcttgagata
gtctgtctgctgctcggaaaataggaagataagtacaatgcagagtgagc
ctttttaacagaatgaaagcaagcattgaagagacagtagaacaacaaag
agtgagggctaatggacacagccaatgttagtctgtgtggtccacgttca
cgtcagattcccaacccttttggcaggtgtcctttacacaattggtcctt
ccttccattacttcacagagatgtagtcattctggatgtatgtttggtgt
gtgttataataaaatgacttaatcctttaacaacttcattgatttttctt
gggatttatctgttttgatcaatggaaatgagaagacatttggcaaatat
gggattaaatcttaagagtgagatgggcaagccagatgtagtgccacatg
cctccaatctcagcactcaggaggcagagacagggacattgctatgaatt
cgaggccagcctttttttccatagtaagcttcagaccaactccacatggt
acgatcctgtctcattcccctcccaaaagatgaccaaatactggatagtt
tgacctactaacactatatttctttttcactgcgaatttggataggccac
ttggataagagtgggagaagaagatttagaggtggtggtcccatgtctag
cctgctggtgttttaaggtacaaatacgtttcttctaagagcttcctgtg
tatctctctgggactccatagctttctagatcgctgtgagaacagcacaa
gctccttgaagtctcccccccccttcttttttctccccacatccatcact
gggtggagtggtct
gaattcttcctatatcagatgctctgagggatcattcctgaaggatgagt
aaagagaagtcaaggagaaaaaaatggaaagcattatggggaaggcacag
aggcacagtacagttgagagcagagcaaaccatgggcaactccatcttcc
tggagtgctaaactctagtgcctagaaatggggctgagagcccagaaaga
ggggttggttcagagagtgacatgtgctgctccaagaagcttagacacag
agatctaggagtatagtgaaagttggtattttgcataattcttcctgcaa
tcctgttcaggatccagggatggaaggttgggcttaacaagacaggttga
ggggcagtggagatagtaaatcaccatcttagttagggcaagagatacta
agggatacaaattatatccctgatgatagatacacagggtaagaaggagg
cagtatcagactggcagaatgtggcgagaagaaataggtttctagcctgt
gctgtgaagaactgactgtggtctctagcctgtgctatttacagttgatt
gcatcacaacaatgcatcttcagtctatcctattctgttactctgcccag
gcagagtaaataggaatattaacttattggacaggtgtccactgaacacg
ggcttcatggctgattccctgtagcttttcccagaacataatcctgtgta
cagaacaaaaggagcagaaggccagtgggtaccaaggagtcaggtcacag
gtcagcagagaagagaagggtgatgtcaccctgggtttttcttttgtctg
agtgagcattttctctgcggtagaacaccactgtcaaatcaatattgaaa
taaaagggtgggggaggacaggagggagagaaaaaagcaacaacttgaag
tccagagaggtagggaggctgatcaatggcctcaggaacaatccataact
aattatgtgataaaaagctgtcagtcaataggctgggaaataaatttatt
ggttggaaacaacaggtctgctttcatttccccaccattttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_29144634_29145746
seq2: B6Ng01-161G19.b_46_1159 (reverse)

seq1  AGACCACTCCACCCAGTGATTGGAGTGGGAGAG-AAAAAGAGAGGGGGGG  49
      |||||||||||||||||||| |  ||||| ||| |||||||  |||||||
seq2  AGACCACTCCACCCAGTGATGGATGTGGG-GAGAAAAAAGAAGGGGGGGG  49

seq1  GAGACTTCAGGGAGCTTGTGCTG-TCTCACAGCGATCTAGAAAGCTATGG  98
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  GAGACTTCAAGGAGCTTGTGCTGTTCTCACAGCGATCTAGAAAGCTATGG  99

seq1  AGTCCCAGAGAGATACACAGGAAGCTCTTAGGAGGAAAACGTATTTTGTA  148
      ||||||||||||||||||||||||||||||| ||  ||||||| ||||||
seq2  AGTCCCAGAGAGATACACAGGAAGCTCTTAGAAG--AAACGTA-TTTGTA  146

seq1  -CTTAAAACACAGGCAGGCTAGACATGGGACCACCA-CTCTAAATCTTCC  196
       ||||||||||  ||||||||||||||||||||||| ||||||||||| |
seq2  CCTTAAAACACCAGCAGGCTAGACATGGGACCACCACCTCTAAATCTT-C  195

seq1  TTCTCCCACTCTTAT-CAAGTGGCCTTATCAAATTCGCAGTGAAAAAGAA  245
      ||||||||||||||| ||||||||||   |||||||||||||||||||||
seq2  TTCTCCCACTCTTATCCAAGTGGCCTATCCAAATTCGCAGTGAAAAAGAA  245

seq1  ATATAGTGTTAGTAGGTCAAACTATCCAGTATTTGGTCATCTTTTGGGAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTGTTAGTAGGTCAAACTATCCAGTATTTGGTCATCTTTTGGGAG  295

seq1  GGGAATGAGACAGGATCGTACCATGTGGAGTTGGTCTGAAGCTTACTATG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGAGACAGGATCGTACCATGTGGAGTTGGTCTGAAGCTTACTATG  345

seq1  GAAAAAAAGGCTGGCCTCGAATTCATAGCAATGTCCCTGTCTCTGCCTCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAGGCTGGCCTCGAATTCATAGCAATGTCCCTGTCTCTGCCTCC  395

seq1  TGAGTGCTGAGATTGGAGGCATGTGGCACTACATCTGGCTTGCCCATCTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCTGAGATTGGAGGCATGTGGCACTACATCTGGCTTGCCCATCTC  445

seq1  ACTCTTAAGATTTAAT-CCATATTTGCCAAATGTCTTCTCATTTCCATTG  494
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACTCTTAAGATTTAATCCCATATTTGCCAAATGTCTTCTCATTTCCATTG  495

seq1  ATCAAAACAGATAAATCCCAAGAAAAATCAATGAAGTTGTTAAAGGATTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAACAGATAAATCCCAAGAAAAATCAATGAAGTTGTTAAAGGATTA  545

seq1  AGTCATTTTATTATAACACACACCAAACATACATCCAGAATGACTACATC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTTATTATAACACACACCAAACATACATCCAGAATGACTACATC  595

seq1  TCTGTGAAGTAATGGAAGGAAGGACCAATTGTGTAAAGGACACCTGCCAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAAGTAATGGAAGGAAGGACCAATTGTGTAAAGGACACCTGCCAA  645

seq1  AAGGGTTGGGAATCTGACGTGAACGTGGACCACACAGACTAACATTGGCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTGGGAATCTGACGTGAACGTGGACCACACAGACTAACATTGGCT  695

seq1  GTGTCCATTAGCCCTCACTCTTTGTTGTTCTACTGTCTCTTCAATGCTTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCATTAGCCCTCACTCTTTGTTGTTCTACTGTCTCTTCAATGCTTG  745

seq1  CTTTCATTCTGTTAAAAAGGCTCACTCTGCATTGTACTTATCTTCCTATT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTCTGTTAAAAAGGCTCACTCTGCATTGTACTTATCTTCCTATT  795

seq1  TTCCGAGCAGCAGACAGACTATCTCAAGAACCTCTTAAATCCCCTTTCTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGAGCAGCAGACAGACTATCTCAAGAACCTCTTAAATCCCCTTTCTA  845

seq1  TTAATATACCCAGAACACACAAAGCTGCTTGGTAACATTGCATTGGTTCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATACCCAGAACACACAAAGCTGCTTGGTAACATTGCATTGGTTCA  895

seq1  ACAGATATTTGCAAAGTAAATATGTAAATTATTGAGGTGGTTTCCCATTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATTTGCAAAGTAAATATGTAAATTATTGAGGTGGTTTCCCATTG  945

seq1  TTTTCTGAAATGATGTGAAATCTCAGTCCATATTCAGAGAACCTTGAAAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGAAATGATGTGAAATCTCAGTCCATATTCAGAGAACCTTGAAAA  995

seq1  CTGGGGCTGGGGTAGCTACCTATTGGCTTTTACAATTTTTTGTTGTTGGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCTGGGGTAGCTACCTATTGGCTTTTACAATTTTTTGTTGTTGGA  1045

seq1  TTTTTTTTTAACCACATAATTAAATCATCACAAACCAATTTGAGTGACAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAACCACATAATTAAATCATCACAAACCAATTTGAGTGACAT  1095

seq1  AAATCACAAGAGAGAATTC  1113
      |||||||||||||||||||
seq2  AAATCACAAGAGAGAATTC  1114

seq1: chr9_29031875_29032916
seq2: B6Ng01-161G19.g_66_1109

seq1  GAATTCTTCCTATATCAGATGCTCTGAGGGATCATTCCTGAAGGATGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTATATCAGATGCTCTGAGGGATCATTCCTGAAGGATGAGT  50

seq1  AAAGAGAAGTCAAGGAGAAAAAAATGGAAAGCATTATGGGGAAGGCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAGTCAAGGAGAAAAAAATGGAAAGCATTATGGGGAAGGCACAG  100

seq1  AGGCACAGTACAGTTGAGAGCAGAGCAAACCATGGGCAACTCCATCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGTACAGTTGAGAGCAGAGCAAACCATGGGCAACTCCATCTTCC  150

seq1  TGGAGTGCTAAACTCTAGTGCCTAGAAATGGGGCTGAGAGCCCAGAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGCTAAACTCTAGTGCCTAGAAATGGGGCTGAGAGCCCAGAAAGA  200

seq1  GGGGTTGGTTCAGAGAGTGACATGTGCTGCTCCAAGAAGCTTAGACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGGTTCAGAGAGTGACATGTGCTGCTCCAAGAAGCTTAGACACAG  250

seq1  AGATCTAGGAGTATAGTGAAAGTTGGTATTTTGCATAATTCTTCCTGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTAGGAGTATAGTGAAAGTTGGTATTTTGCATAATTCTTCCTGCAA  300

seq1  TCCTGTTCAGGATCCAGGGATGGAAGGTTGGGCTTAACAAGACAGGTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTCAGGATCCAGGGATGGAAGGTTGGGCTTAACAAGACAGGTTGA  350

seq1  GGGGCAGTGGAGATAGTAAATCACCATCTTAGTTAGGGCAAGAGATACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGTGGAGATAGTAAATCACCATCTTAGTTAGGGCAAGAGATACTA  400

seq1  AGGGATACAAATTATATCCCTGATGATAGATACACAGGGTAAGAAGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATACAAATTATATCCCTGATGATAGATACACAGGGTAAGAAGGAGG  450

seq1  CAGTATCAGACTGGCAGAATGTGGCGAGAAGAAATAGGTTTCTAGCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCAGACTGGCAGAATGTGGCGAGAAGAAATAGGTTTCTAGCCTGT  500

seq1  GCTGTGAAGAACTGACTGTGGTCTCTAGCCTGTGCTATTTACAGTTGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAAGAACTGACTGTGGTCTCTAGCCTGTGCTATTTACAGTTGATT  550

seq1  GCATCACAACAATGCATCTTCAGTCTATCCTATTCTGTTACTCTGCCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACAACAATGCATCTTCAGTCTATCCTATTCTGTTACTCTGCCCAG  600

seq1  GCAGAGTAAATAGGAATATTAACTTATTGGACAGGTGTCCACTGAACACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTAAATAGGAATATTAACTTATTGGACAGGTGTCCACTGAACACG  650

seq1  GGCTTCATGGCTGATTCCCTGTAGCTTTTCCCAGAACATAATCCTGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCATGGCTGATTCCCTGTAGCTTTTCCCAGAACATAATCCTGTGTA  700

seq1  CAGAAC-AAAGGAGCAGAAGGCCAGT-GGTACCAAGGAGTCAGGTCACAG  748
      |||||| ||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGAACAAAAGGAGCAGAAGGCCAGTGGGTACCAAGGAGTCAGGTCACAG  750

seq1  GTCAGCAGAGAAGAGAAGGGTGATGTCACCCTGGG-TTTTCTTTTGTCTG  797
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTCAGCAGAGAAGAGAAGGGTGATGTCACCCTGGGTTTTTCTTTTGTCTG  800

seq1  AGTGAGCAATCTCTCTGCGGTAGAACACCACTGTCAAAATCAATATTGAA  847
      |||||||| | |||||||||||||||||||||||| ||||||||||||||
seq2  AGTGAGCATTTTCTCTGCGGTAGAACACCACTGTC-AAATCAATATTGAA  849

seq1  ATAAAAGGGT-GGGGAGGACCAGAGGGAGAGAAAAAAGCAACAAC-TGAA  895
      |||||||||| |||||||||  ||||||||||||||||||||||| ||||
seq2  ATAAAAGGGTGGGGGAGGACAGGAGGGAGAGAAAAAAGCAACAACTTGAA  899

seq1  GTCCAGAGAGGTAGGAAGGCTGATCAATGGCCTCAGGAACAATCCAT-AC  944
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  GTCCAGAGAGGTAGGGAGGCTGATCAATGGCCTCAGGAACAATCCATAAC  949

seq1  TAATTATGGTGATAAAAAGCTGTCAGTCAATAGCCTGGATATTAAATTTA  994
      ||||||| ||||||||||||||||||||||||| ||||  | ||||||||
seq2  TAATTAT-GTGATAAAAAGCTGTCAGTCAATAGGCTGGGAAATAAATTTA  998

seq1  GTGGGTTGGAGACAACAGGTCTGCTTTCATTTCCCCCACCATTTTATT  1042
       | ||||||| ||||||||||||||||||||| |||||||||||||||
seq2  -TTGGTTGGAAACAACAGGTCTGCTTTCATTT-CCCCACCATTTTATT  1044