BAC Information

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BAC

Clone NameB6Ng01-161J08
Chromosome9 (Build37)
Map Location 62,502,340 - 62,668,001
singlet/doubletdoublet
Overlap geneItga11, EG665478, Fem1b
Upstream geneRplp1, Kif23, Paqr5, Glce, Spesp1, LOC100039897, Anp32a, Coro2b
Downstream geneCln6, Calml4, Pias1, LOC100039976, Ppia-ps9_818.1, Lbxcor1, Map2k5, 2300009A05Rik, Iqch, LOC621763, 2310007F21Rik, Smad3, LOC100040009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161J08.bB6Ng01-161J08.g
ACCDH954658DH954659
length1,015768
definitionDH954658|Mus musculus domesticus DNA, BAC clone: B6Ng01-161J08, 5' end.DH954659|Mus musculus domesticus DNA, BAC clone: B6Ng01-161J08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,502,340 - 62,503,357)(62,667,467 - 62,668,001)
sequence
gaattccaaacagagaattgggaaacatggaacctctgggccatggcaca
gctgattgaaagatgagtcttcctcgggacaaagccaggctggcccaatg
agccagctgcagacaggacagcggccttctgttttgactgtttgactgtt
ttggttgcttgtctcatttcatgttcctcctgggagcaatttgctgagag
agctggtccctgcccagcagtgcactgtgtataagagaggacaggcagat
aaatatgtgtgggcttgggaggaggttcttttacgtattattttttaaaa
tatggaacatttcatgaatttgtgggttatcttgcacgagggccatcctc
gtctaatccatattattttacttttttttttaatgtgtgctgccaaagca
agcagtatgccgcagttctatggaggggaggaaggaggaaacggaagcct
agatcaaggagtggctccttgcagtaagggcctctctatccttcaggacc
agaaagcatccttcattgcactaagaagctgaggcacaaggaggggaagt
gacgtgccagaggtcacacaccacagcctagggtccagagttccttgtcc
ttgagacagctttcattcaaagcctaacatttatcggcagtctcactgaa
gagctccttttcactatgggccagaggggtcatctacccacagggtcgtg
gtgatggaactgaagctagtcccgtgggcttcattggagaacattctcca
tgcctttacaacccgtctctcacctcagcagggctttgctgtgtcatcca
agacactgacttctgaaggtgtaacgcacacagtactcaagccatgtctc
ccacgtcagattgtgagcttctgaaagaccatcttctcactgtgccagtc
ccaagcacacagaagtgactcaaacttggtgaattgtgtgattagtcagt
gagttgatgctgtcccttaggccggtggatgataaaccagctattcttca
gaaaagacctgttta
gaattctgagttcgaggccagcctggtctacagagtgagttccaggacag
agaaatcctgtcacgaaaaacaaaaacaaaaaacaacaacaacaaaaacc
tgtcaataaaaatgatgtcgctgggggctgaaatgtggctcagttggagt
gggtatctagctcaaacaggttctgtgtttgatccccaccatgtatacct
gacagcggtgaggcagtttgttaaccccagtgcaggagaggctgaagaac
aactcagctagcctggtctagcacactgcttaaaaaagaaagaaagagca
gggcgtggtggcacattcctttaatcccagcactcaggaggcagagacag
gcggatttctgagttcgaggccagcctggtctacagagaggccagcctgg
tctacagagtgattttcatgacagccagggctacacagagaaaccttgtc
tcgaaaaaaaaaaaaaaaaaaaaaaaagaaaagaaagaaagaaaggaaga
aaagggaacaaaattctccttgtatgtatcttttgagtatggtttccttt
cctccagtggtggctgaggtgaaattccttgacaaagctatttagaggag
gaaggatttatttttagcttaaacttccaggttccagtccaccatttcag
ggaagtcacatcaggagaagcaggtgaccacagctacaggaatccacaga
aagaatgcatgcaatgccccacccgattcccccactgaaaatgtgctgct
gattcatggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_62502340_62503357
seq2: B6Ng01-161J08.b_45_1059

seq1  GAATTCCAAACAGAGAATTGGGAAACATGGAACCTCTGGGCCATGGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACAGAGAATTGGGAAACATGGAACCTCTGGGCCATGGCACA  50

seq1  GCTGATTGAAAGATGAGTCTTCCTCGGGACAAAGCCAGGCTGGCCCAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTGAAAGATGAGTCTTCCTCGGGACAAAGCCAGGCTGGCCCAATG  100

seq1  AGCCAGCTGCAGACAGGACAGCGGCCTTCTGTTTTGACTGTTTGACTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCTGCAGACAGGACAGCGGCCTTCTGTTTTGACTGTTTGACTGTT  150

seq1  TTGGTTGCTTGTCTCATTTCATGTTCCTCCTGGGAGCAATTTGCTGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGCTTGTCTCATTTCATGTTCCTCCTGGGAGCAATTTGCTGAGAG  200

seq1  AGCTGGTCCCTGCCCAGCAGTGCACTGTGTATAAGAGAGGACAGGCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTCCCTGCCCAGCAGTGCACTGTGTATAAGAGAGGACAGGCAGAT  250

seq1  AAATATGTGTGGGCTTGGGAGGAGGTTCTTTTACGTATTATTTTTTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTGTGGGCTTGGGAGGAGGTTCTTTTACGTATTATTTTTTAAAA  300

seq1  TATGGAACATTTCATGAATTTGTGGGTTATCTTGCACGAGGGCCATCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAACATTTCATGAATTTGTGGGTTATCTTGCACGAGGGCCATCCTC  350

seq1  GTCTAATCCATATTATTTTACTTTTTTTTTTAATGTGTGCTGCCAAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATCCATATTATTTTACTTTTTTTTTTAATGTGTGCTGCCAAAGCA  400

seq1  AGCAGTATGCCGCAGTTCTATGGAGGGGAGGAAGGAGGAAACGGAAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTATGCCGCAGTTCTATGGAGGGGAGGAAGGAGGAAACGGAAGCCT  450

seq1  AGATCAAGGAGTGGCTCCTTGCAGTAAGGGCCTCTCTATCCTTCAGGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAGGAGTGGCTCCTTGCAGTAAGGGCCTCTCTATCCTTCAGGACC  500

seq1  AGAAAGCATCCTTCATTGCACTAAGAAGCTGAGGCACAAGGAGGGGAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCATCCTTCATTGCACTAAGAAGCTGAGGCACAAGGAGGGGAAGT  550

seq1  GACGTGCCAGAGGTCACACACCACAGCCTAGGGTCCAGAGTTCCTTGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGCCAGAGGTCACACACCACAGCCTAGGGTCCAGAGTTCCTTGTCC  600

seq1  TTGAGACAGCTTTCATTCAAAGCCTAACATTTATCGGCAGTCTCACTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACAGCTTTCATTCAAAGCCTAACATTTATCGGCAGTCTCACTGAA  650

seq1  GAGCTCC-TTTCACTATGGGCCAGAGGGGTCATCAACCCACAGGGTCGTG  699
      ||||||| |||||||||||||||||||||||||| |||||||||||||||
seq2  GAGCTCCTTTTCACTATGGGCCAGAGGGGTCATCTACCCACAGGGTCGTG  700

seq1  GTGATGGAACTGAAGCTAGTCCCGTGGGCTTCATTGGAGAACATTCTCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGAACTGAAGCTAGTCCCGTGGGCTTCATTGGAGAACATTCTCCA  750

seq1  TGCCTTTACAACCCGTCTCTCACCTCCAGCAGGGCTGTGCTGTGTCATCC  799
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  TGCCTTTACAACCCGTCTCTCACCT-CAGCAGGGCTTTGCTGTGTCATCC  799

seq1  AAGACACTGACTTCTGAAGGTGTAACGCACACAGTACTCAGGCCATGTCT  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAGACACTGACTTCTGAAGGTGTAACGCACACAGTACTCAAGCCATGTCT  849

seq1  CCCACGTCAGACTGTGAGCTTCTGAAAGACCATC-TCTCACTGTGCCAGT  898
      ||||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  CCCACGTCAGATTGTGAGCTTCTGAAAGACCATCTTCTCACTGTGCCAGT  899

seq1  CCCAAGCACACAGTAGGCACTCAAAACATGGTGAA-TGTGTGAATAAGTC  947
      ||||||||||||| ||  |||| |||| ||||||| |||||| || ||||
seq2  CCCAAGCACACAGAAGTGACTC-AAACTTGGTGAATTGTGTG-ATTAGTC  947

seq1  AGGGAGTGGATGCGTTCACATTAGGCCGGTGGATGAATAAACCAGTAATT  997
      || |||| |||||  || | ||||||||||||||| |||||||||  |||
seq2  AGTGAGTTGATGCTGTC-CCTTAGGCCGGTGGATG-ATAAACCAGCTATT  995

seq1  CTCCAGTAAAAGACCTGTTTA  1018
      || ||| ||||||||||||||
seq2  CTTCAG-AAAAGACCTGTTTA  1015

seq1: chr9_62667467_62668001
seq2: B6Ng01-161J08.g_301_835 (reverse)

seq1  CCCCCCCCCCCATGAATCAGCAGCACATTTTCAGTGGGGGAATCGGGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCATGAATCAGCAGCACATTTTCAGTGGGGGAATCGGGTGG  50

seq1  GGCATTGCATGCATTCTTTCTGTGGATTCCTGTAGCTGTGGTCACCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGCATGCATTCTTTCTGTGGATTCCTGTAGCTGTGGTCACCTGCT  100

seq1  TCTCCTGATGTGACTTCCCTGAAATGGTGGACTGGAACCTGGAAGTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGATGTGACTTCCCTGAAATGGTGGACTGGAACCTGGAAGTTTAA  150

seq1  GCTAAAAATAAATCCTTCCTCCTCTAAATAGCTTTGTCAAGGAATTTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAATAAATCCTTCCTCCTCTAAATAGCTTTGTCAAGGAATTTCAC  200

seq1  CTCAGCCACCACTGGAGGAAAGGAAACCATACTCAAAAGATACATACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCACCACTGGAGGAAAGGAAACCATACTCAAAAGATACATACAAG  250

seq1  GAGAATTTTGTTCCCTTTTCTTCCTTTCTTTCTTTCTTTTCTTTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTTTGTTCCCTTTTCTTCCTTTCTTTCTTTCTTTTCTTTTTTTTT  300

seq1  TTTTTTTTTTTTTTTCGAGACAAGGTTTCTCTGTGTAGCCCTGGCTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTCGAGACAAGGTTTCTCTGTGTAGCCCTGGCTGTCA  350

seq1  TGAAAATCACTCTGTAGACCAGGCTGGCCTCTCTGTAGACCAGGCTGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCACTCTGTAGACCAGGCTGGCCTCTCTGTAGACCAGGCTGGCC  400

seq1  TCGAACTCAGAAATCCGCCTGTCTCTGCCTCCTGAGTGCTGGGATTAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTCAGAAATCCGCCTGTCTCTGCCTCCTGAGTGCTGGGATTAAAG  450

seq1  GAATGTGCCACCACGCCCTGCTCTTTCTTTCTTTTTTAAGCAGTGTGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGCCACCACGCCCTGCTCTTTCTTTCTTTTTTAAGCAGTGTGCTA  500

seq1  GACCAGGCTAGCTGAGTTGTTCTTCAGCCTCTCCT  535
      |||||||||||||||||||||||||||||||||||
seq2  GACCAGGCTAGCTGAGTTGTTCTTCAGCCTCTCCT  535