BAC Information

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BAC

Clone NameB6Ng01-161J09
Chromosome9 (Build37)
Map Location 15,149,330 - 15,251,615
singlet/doubletdoublet
Overlap geneLOC100040375, LOC100039955
Upstream geneEndod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik
Downstream geneBC017612, Ccdc67, LOC665461, LOC330891, Slc36a4, Mtnr1b, Fat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161J09.bB6Ng01-161J09.g
ACCDH954660DH954661
length9741,133
definitionDH954660|Mus musculus domesticus DNA, BAC clone: B6Ng01-161J09, 5' end.DH954661|Mus musculus domesticus DNA, BAC clone: B6Ng01-161J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,250,971 - 15,251,615)(15,149,330 - 15,150,454)
sequence
gaattcctttgtagaatgctacctcaatttaaacaggataaaacaacaaa
gaagaattttattcttaataggctttagttgccaataagaaaggaaagga
gcaaatatattgttacaatgtactttcaaataagataaaatgtattttaa
tgaaaagttcttaaaatgaatagattcacttctctgcttccccttgacca
tctaacacagccaaggtaaagaggatcaggcctcatgagtacttgtgcat
gtatgcacatgcgtgtacacacaacactttctagtttcaagaaggcccaa
caaaaaatgaaattccaggagaatgcacacacatagcggccgatctcggg
tgctaaatactatactcaactcaaaggatgcaagacctttggcaactcct
ggattccgatatttacacagagaaggagatagatttaattttagaaagtg
aggaactgatccaagattgatgaggaataaaaacattattatcaagctag
agtcaccttgaagagactttccactcaagccatatatatgacatctcagc
acaagggggtcactgatggtagtggatcataactcactatataaaatctg
agtctatactactatacaaaatttcaggagaaatgaagtgactattctac
tatagaaacccaatataaaagggttggcaaaacttaaaaaataaaataaa
caaccttggcaactgtgatgtcaatcaatttgtaagcgaactggacacaa
ctagccagtaagaagccaaggaggagcaggtaagggagtgaggagggtag
cctcgaggcgtcactcacaaaacccattacttattttaaaaggcagatac
agcatttacctttccggtagaaaaaacctcagtgagacagcaacttaaca
cgtgatcaaatttaccatcctctagtgaaaaggccttcagagcatgtgac
ttcctacaccagacgctgagatca
gaattcatgcatacagtgagtatgtcacttaccacaccttgccactctta
tctgaatatttactttcaaatacatatgctttacttaacatctattttgt
tttaattatgtgtatgtgcatgtgccttggaagtccagaaaagggtatgt
gatttattagagctgtagttaaagctggttagaagtttaatgtgggtcta
ggtactctataagagcagtcaatacttaactgctgagccatgtctgcatc
actaaaggcagcattttgaatgaaaagctttgttctttatatgatcaaat
tctatcaataaattgaaacaatattaatgaaaacattaactttgatagct
cactcttacaatctttgtactcagatactgagtttgaagccaatatggac
taaagtgaaacactgtctcacagaaagaagatgaaaagtccccaaatgca
cagacaagcaggttaagagactgacagtgaacaggaagaattacactaat
tagctcagcctattaaataagcttcttttgagacatagaatacttttgca
aatctaaatgccaggcagagcaaaattgattaaataaaaattataacaag
cacagaacattaaacaaaataagctattgaaacaatatttcactctattc
agtccatgaaatttcatgaaaaaagttcctatggaacctcttgagtataa
attttaaagcagaatgccaattttgataaataaaatcttaagggggagaa
aaaaacttaaaaaaatacacaacccgaatgataattatgtctaatgtaga
aatgctgaagtatgcatttatggagaggagactagttacggtggtgaaca
tctttaaatcttagcacatagaaggcagaagacaggtacatttcttgttg
agtaccaggccaaccagggctacaaattgagacacagtttcaaacaaaca
aacaaacaacaaaacaaaccaaacaacacctgaaggagcagttgggggag
aatggctcagcagtaagagaactgactgttcttcagaggtcctgagttca
ttcccagtaacaccatggtggctccgcaacatctgtgaacagaatctgat
acgtccttctttctgggggtgagcgtgaagaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_15250971_15251615
seq2: B6Ng01-161J09.b_42_686 (reverse)

seq1  ATAGTCACTTCATTTCTCCTGAAATTTTGTATAGTAGTATAGACTCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCACTTCATTTCTCCTGAAATTTTGTATAGTAGTATAGACTCAGAT  50

seq1  TTTATATAGTGAGTTATGATCCACTACCATCAGTGACCCCCTTGTGCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATAGTGAGTTATGATCCACTACCATCAGTGACCCCCTTGTGCTGA  100

seq1  GATGTCATATATATGGCTTGAGTGGAAAGTCTCTTCAAGGTGACTCTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCATATATATGGCTTGAGTGGAAAGTCTCTTCAAGGTGACTCTAGC  150

seq1  TTGATAATAATGTTTTTATTCCTCATCAATCTTGGATCAGTTCCTCACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAATAATGTTTTTATTCCTCATCAATCTTGGATCAGTTCCTCACTT  200

seq1  TCTAAAATTAAATCTATCTCCTTCTCTGTGTAAATATCGGAATCCAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATTAAATCTATCTCCTTCTCTGTGTAAATATCGGAATCCAGGAG  250

seq1  TTGCCAAAGGTCTTGCATCCTTTGAGTTGAGTATAGTATTTAGCACCCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAAGGTCTTGCATCCTTTGAGTTGAGTATAGTATTTAGCACCCGA  300

seq1  GATCGGCCGCTATGTGTGTGCATTCTCCTGGAATTTCATTTTTTGTTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGGCCGCTATGTGTGTGCATTCTCCTGGAATTTCATTTTTTGTTGGG  350

seq1  CCTTCTTGAAACTAGAAAGTGTTGTGTGTACACGCATGTGCATACATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTGAAACTAGAAAGTGTTGTGTGTACACGCATGTGCATACATGCA  400

seq1  CAAGTACTCATGAGGCCTGATCCTCTTTACCTTGGCTGTGTTAGATGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACTCATGAGGCCTGATCCTCTTTACCTTGGCTGTGTTAGATGGTC  450

seq1  AAGGGGAAGCAGAGAAGTGAATCTATTCATTTTAAGAACTTTTCATTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAAGCAGAGAAGTGAATCTATTCATTTTAAGAACTTTTCATTAAA  500

seq1  ATACATTTTATCTTATTTGAAAGTACATTGTAACAATATATTTGCTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTTATCTTATTTGAAAGTACATTGTAACAATATATTTGCTCCTT  550

seq1  TCCTTTCTTATTGGCAACTAAAGCCTATTAAGAATAAAATTCTTCTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTTATTGGCAACTAAAGCCTATTAAGAATAAAATTCTTCTTTGT  600

seq1  TGTTTTATCCTGTTTAAATTGAGGTAGCATTCTACAAAGGAATTC  645
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATCCTGTTTAAATTGAGGTAGCATTCTACAAAGGAATTC  645

seq1: chr9_15149330_15150454
seq2: B6Ng01-161J09.g_68_1200

seq1  GAATTCATGCATACAGTGAGTATGTCACTTACCACACCTTGCCACTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCATACAGTGAGTATGTCACTTACCACACCTTGCCACTCTTA  50

seq1  TCTGAATATTTACTTTCAAATACATATGCTTTACTTAACATCTATTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATATTTACTTTCAAATACATATGCTTTACTTAACATCTATTTTGT  100

seq1  TTTAATTATGTGTATGTGCATGTGCCTTGGAAGTCCAGAAAAGGGTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTATGTGTATGTGCATGTGCCTTGGAAGTCCAGAAAAGGGTATGT  150

seq1  GATTTATTAGAGCTGTAGTTAAAGCTGGTTAGAAGTTTAATGTGGGTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTAGAGCTGTAGTTAAAGCTGGTTAGAAGTTTAATGTGGGTCTA  200

seq1  GGTACTCTATAAGAGCAGTCAATACTTAACTGCTGAGCCATGTCTGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTCTATAAGAGCAGTCAATACTTAACTGCTGAGCCATGTCTGCATC  250

seq1  ACTAAAGGCAGCATTTTGAATGAAAAGCTTTGTTCTTTATATGATCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGGCAGCATTTTGAATGAAAAGCTTTGTTCTTTATATGATCAAAT  300

seq1  TCTATCAATAAATTGAAACAATATTAATGAAAACATTAACTTTGATAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAATAAATTGAAACAATATTAATGAAAACATTAACTTTGATAGCT  350

seq1  CACTCTTACAATCTTTGTACTCAGATACTGAGTTTGAAGCCAATATGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTACAATCTTTGTACTCAGATACTGAGTTTGAAGCCAATATGGAC  400

seq1  TAAAGTGAAACACTGTCTCACAGAAAGAAGATGAAAAGTCCCCAAATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGAAACACTGTCTCACAGAAAGAAGATGAAAAGTCCCCAAATGCA  450

seq1  CAGACAAGCAGGTTAAGAGACTGACAGTGAACAGGAAGAATTACACTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAGCAGGTTAAGAGACTGACAGTGAACAGGAAGAATTACACTAAT  500

seq1  TAGCTCAGCCTATTAAATAAGCTTCTTTTGAGACATAGAATACTTTTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCAGCCTATTAAATAAGCTTCTTTTGAGACATAGAATACTTTTGCA  550

seq1  AATCTAAATGCCAGGCAGAGCAAAATTGATTAAATAAAAATTATAACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAATGCCAGGCAGAGCAAAATTGATTAAATAAAAATTATAACAAG  600

seq1  CACAGAACATTAAACAAAATAAGCTATTGAAACAATATTTCACTCTATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACATTAAACAAAATAAGCTATTGAAACAATATTTCACTCTATTC  650

seq1  AGTCCATGAAATTTCATGAAAAAAGTTCCTATGGAACCTCTTGAGTATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATGAAATTTCATGAAAAAAGTTCCTATGGAACCTCTTGAGTATAA  700

seq1  A-TTTAAAGCAGAATGCCAATTTTGATAAATTAAAATCTTAAGGGGGAGA  749
      | |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATTTTAAAGCAGAATGCCAATTTTGATAAA-TAAAATCTTAAGGGGGAGA  749

seq1  AAAAAACTTAAAAAAATACACAACCCGAATGATAATTATGTCTAATGTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTTAAAAAAATACACAACCCGAATGATAATTATGTCTAATGTAG  799

seq1  AAATGCTGAAGTATGCA-TTATGGAGAGGAGACTAGTTACGGTGGTGCAC  848
      ||||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  AAATGCTGAAGTATGCATTTATGGAGAGGAGACTAGTTACGGTGGTGAAC  849

seq1  ATCTTT-AATCTTAGCACATAGAAGGCAG-AGACAGGTACATTTCT--GT  894
      |||||| |||||||||||||||||||||| ||||||||||||||||   |
seq2  ATCTTTAAATCTTAGCACATAGAAGGCAGAAGACAGGTACATTTCTTGTT  899

seq1  GAGTACCAGGCCAACCAGGGCTACAAATTGAGACACAGTTTCAAACAAAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACCAGGCCAACCAGGGCTACAAATTGAGACACAGTTTCAAACAAAC  949

seq1  AAACAAACAAACAAAACAAAACAAACAAACACTGAA-GAGCAGTT-GGGG  992
      |||||||| ||||||||||| |||||||   ||||| |||||||| ||||
seq2  AAACAAAC-AACAAAACAAACCAAACAACACCTGAAGGAGCAGTTGGGGG  998

seq1  AG-ATGGCTCAGCAGTTAAGAGAACTGACTGTTCTTCCAGAGGTCCTGAG  1041
      || |||||||||||| |||||||||||||||||||| |||||||||||||
seq2  AGAATGGCTCAGCAG-TAAGAGAACTGACTGTTCTT-CAGAGGTCCTGAG  1046

seq1  TTCAATTCCCAGTAACCACATGGTGGCT-CGCAACCATCTGT-AACAGAA  1089
      ||| ||||||||||||  |||||||||| ||||| ||||||| |||||||
seq2  TTC-ATTCCCAGTAACACCATGGTGGCTCCGCAA-CATCTGTGAACAGAA  1094

seq1  TCTGATACCTTCTTCTTTCTGGTG--TAGC-TGAAGACA  1125
      |||||||| | ||||||||||| |   ||| ||||||||
seq2  TCTGATACGTCCTTCTTTCTGGGGGTGAGCGTGAAGACA  1133