BAC Information

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BAC

Clone NameB6Ng01-161L05
Chromosome9 (Build37)9 (Build37)
Map Location 9,594,025 - 9,594,13013,082,346 - 13,085,871
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTrpc6, Pgr, 9030420J04Rik
Downstream geneCntn5, LOC665154, LOC100039970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161L05.bB6Ng01-161L05.g
ACCDH954741DH954742
length1061,024
definitionDH954741|Mus musculus domesticus DNA, BAC clone: B6Ng01-161L05, 5' end.DH954742|Mus musculus domesticus DNA, BAC clone: B6Ng01-161L05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,594,025 - 9,594,130)(13,082,346 - 13,085,871)
sequence
actccctgattccttggatctttccctttctcccttgctccttacatccc
tccctcctttgtcctttctacttttcttccttccttccttccttccttcc
ttcctt
gaattccatgataaaaccaaattcacacaatatctttccacaaatccagc
cctttaaagaataataaagggaaaaaaacaacaaaaggacagaaactaca
ccctagaaaaagcaagaaagtaatccttcaacaaacctaaaggaagacag
ctgcaagaatagaatcccaactttaaaaatgaaaataacaagaagcaaca
attactttttttttaatttctcttaacattaatgggctcaattcccaata
aaatgacatagactaatagactggcaacacaaacaggacccaacattttg
ctgcttacaggaaacccaaagcaggaaaaaagacagacactaatcagagt
taaggctagaaaacaagttcccaagcaaatggtctgaagaaacaagctga
gtagccattctaatatcgaataaaattgacttccaacacaaagttatcaa
aaaagacaaggaggagcacttcatactcatcaaaggtaaaatctaccaag
atgaactctcaattctgaaaatctacaaatgcaagggcagctacattcat
tgaagaaactttagtaaggctcaaagcacacatggcacctcacacaataa
tagtgggagacttcaacacctgtcctgtccagaaggacttagttattcca
tgggtcaaggaggacggaggcctacaagagaaatgggtggagaaagggga
gcaagaccaagcaaagagttgccaaggtctgtttaatgaaggttaggagc
ctgattataagcacacagtgagagaaaatagggaggggtcgagggggcat
aataaaatacagagaaagggatggacatctggggtggatgctgattacag
gcttcttgcagttatcttggaatgtcggccctgaaacagtcctggacaca
aacagaaacatggaggaggaggtgaagctgccttaatctaagcagttcta
ggcattaagtggagaactaaaggaggatgaagctgcagtctcggtgcctg
gtgtaagacatgaagaggggtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_9594025_9594130
seq2: B6Ng01-161L05.b_52_157

seq1  ACTCCCTGATTCCTTGGATCTTTCCCTTTCTCCCTTGCTCCTTACATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTGATTCCTTGGATCTTTCCCTTTCTCCCTTGCTCCTTACATCCC  50

seq1  TCCCTCCTTTGTCCTTTCTACTTTTCTTCCTTCCTTCCTTCCTTCCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTTTGTCCTTTCTACTTTTCTTCCTTCCTTCCTTCCTTCCTTCC  100

seq1  TTCCTT  106
      ||||||
seq2  TTCCTT  106

seq1: chr9_13082346_13085871
seq2: B6Ng01-161L05.g_507_1092

seq1  CAAAGATATCAAAAAACACAAGGAGGGGAAATTCATACTCATCAAAGGAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAATCTACCAAGATGAACTCTCAATTCTGAATATTTATGCTCCAAATAAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  GGCACCTCACACAATAAATAATAGTGGGAGACTTCAACACCCCATTCTCA  200
                                                        
seq2  --------------------------------------------------  0

seq1  CCAATGGACAGAACCTGGAAACAGAAACTAAACAGAGACACTTGGACACT  250
                                                        
seq2  --------------------------------------------------  0

seq1  AACCAAAGTTATGAAAGACATGGATTTAATAGATATCTACAAAACATTTT  300
                                                        
seq2  --------------------------------------------------  0

seq1  ATCCCACAATATAAGGATATACCTTCTTCTCAGCGCCACATGGTACCTCC  350
                                                        
seq2  --------------------------------------------------  0

seq1  TCCAAAACTGGCCATATAATTGGTCACAAAACAGGCCTCCACAGATACAA  400
                                                        
seq2  --------------------------------------------------  0

seq1  AAATATTGAAATTATAGCTTGTCCAGCAGGATTTAGTTATTCTGTGGGTC  450
                                                        
seq2  --------------------------------------------------  0

seq1  GAGGAGGACTCAGGCCTGTAAGAGAAACGGGCGAAGAAAGGAAAGCAAGA  500
                                                        
seq2  --------------------------------------------------  0

seq1  CCAAGCAAAGAGTTGTCAAGGTCTGTTTAATGTAGGCTAGGAGCCTGGTT  550
                                                        
seq2  --------------------------------------------------  0

seq1  ATAAGCACACAATGAGAAAAAATAGGGAGGGGTCGAGGGGGTATAAAGAA  600
                                                        
seq2  --------------------------------------------------  0

seq1  ATGAGATGGGTTGGGGGCCCCACCCTGCCATCTGTTTCCCTGAAGGGGAG  650
                                                        
seq2  --------------------------------------------------  0

seq1  GCAGAGGATTCCCAGAAATGTCTGTTTTAGATTTACAGGCATTAGCCCAA  700
                                                        
seq2  --------------------------------------------------  0

seq1  TGTTTGTCCTTCTGGCATGGTGGGCAGGGGGTGTTGGGCTGTGCAAGGTG  750
                                                        
seq2  --------------------------------------------------  0

seq1  GGCGGCAGCAGACTCCACTAAAGGCTGAGGGACATTAGTGAAAGGGGATG  800
                                                        
seq2  --------------------------------------------------  0

seq1  ACAAGGGACACTAGAGCGTAAAATGCCCAGGCTGGCCACATTTAAAACAG  850
                                                        
seq2  --------------------------------------------------  0

seq1  CCTATCTGTGGGCCAGTCTGCTGAATAGCCATGACAGGCTGAAGTGCTGC  900
                                                        
seq2  --------------------------------------------------  0

seq1  ACCCATCGCAAGGTGGACTGTTTGAGACATCTTATGGGTAAAGGTATCCA  950
                                                        
seq2  --------------------------------------------------  0

seq1  CATCACGGCAGAGGCAAGTCATTTCATTAAGGTCTTTGTCCCTAATTTTA  1000
                                                        
seq2  --------------------------------------------------  0

seq1  CTGTGCAAGACAGCCTTACAGGACAAATTAGCATTCTCATAAGCCAATTG  1050
                                                        
seq2  --------------------------------------------------  0

seq1  TTTAATAAGCTTATTGTCTGCATCCTCATGATCTAGAGTCCTCTCTGCAG  1100
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCAAGTAGGCGACTCACAAATTCACTATATGTGGGAAGCCATTCTGGA  1150
                                                        
seq2  --------------------------------------------------  0

seq1  CTCCCTGGCCAGCCAGACAGAAATATGTGCCAGGCAGTAAACAAGCCCAT  1200
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTGGTGGATGGCTCACCCTTAATCCCTGATTGGCTGAGCAAGCCTGCC  1250
                                                        
seq2  --------------------------------------------------  0

seq1  TGGTGAGGTGATGTGACCTGTGGTGATTGGTTGAGGCGTGGTTGTGGCTT  1300
                                                        
seq2  --------------------------------------------------  0

seq1  GAGTGGATAAAAATGCTTGTACCCCGAGGTACATGGGGGATTTGGAGAGA  1350
                                                        
seq2  --------------------------------------------------  0

seq1  GAAGCTGCCTGAGTAAACTGCTCTAAGAAGAACCGGTGGTTGTGTTTTTC  1400
                                                        
seq2  --------------------------------------------------  0

seq1  CTTGCTGGTCGAGTTGGATGCAACAACTATAGTCTTCTTGGGCCCCTTGA  1450
                                                        
seq2  --------------------------------------------------  0

seq1  ATAACTTTAGTTAGGGGCATGATAACCAAACCTTTTGCTGGAATTGCTCG  1500
                                                        
seq2  --------------------------------------------------  0

seq1  CCAAGCACTAAGCGCTGAGTTGGCAGTTTGAGCCAGGAGACCGACAGGGA  1550
                                                        
seq2  --------------------------------------------------  0

seq1  GGTGTCGCTGCTGAGCCTCTGCTGCGTATTTACCTTGACCACTAAGTTTT  1600
                                                        
seq2  --------------------------------------------------  0

seq1  TCAAAAGTCCAGGTGGCACACAGTGCCTGAAGGGACCTCAGGTTAGTTAC  1650
                                                        
seq2  --------------------------------------------------  0

seq1  TGCAATTGACTGAAAAAGATCAAGGAAGTCAGCTTTCCACAACAGGAATT  1700
                                                        
seq2  --------------------------------------------------  0

seq1  GCCCGCGGGTCAAAACGGATTGAATTACCCGAATCCATTCACCAGGAAGC  1750
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTGCCCGCCGCCTTCTGTAATCAGGTAGAAAACAGAAAGAGTGTAAGG  1800
                                                        
seq2  --------------------------------------------------  0

seq1  AGCATTGGGCCCATACATTCATACCGCAGTGTTAAGCTCCCTCAGGTCTT  1850
                                                        
seq2  --------------------------------------------------  0

seq1  TAAAATGCAGCCTGTTGAATTCTGTCCCCTGGGTGAGAGCAGGCATTCGA  1900
                                                        
seq2  --------------------------------------------------  0

seq1  TCCTCAGCCTCACTTTCTGGTTTGCTCTCTCCCCCACTGGCAGCTCTGCC  1950
                                                        
seq2  --------------------------------------------------  0

seq1  CTCGCTACCAGACTAGGCGGAGAGGTCATGAGGAGGCGCCACTATCCTAA  2000
                                                        
seq2  --------------------------------------------------  0

seq1  GGGTACAATTTCTGTGGAAGCAGATTTGGCTTGGGTGGTTGGAGGGTGGT  2050
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCCACAGTGGCGGTGGGAGGATCATAGCTGGCGGGTCCTGTGGAACCG  2100
                                                        
seq2  --------------------------------------------------  0

seq1  GTAATTACAGGGAAAACCAGCGGTTTAGGTTTTAGATTTTAGATTTAGAT  2150
                                                        
seq2  --------------------------------------------------  0

seq1  TTTAGATTTTAAGGAATTCTCTTTTTTATGCCACCTGAGGCTGCGGCTGG  2200
                                                        
seq2  --------------------------------------------------  0

seq1  GGGATGGGCAAGGATCATTTCCTTAAGGGATGCCTGCAGCGAGGTGAGTT  2250
                                                        
seq2  --------------------------------------------------  0

seq1  CTGTAGAAAGGTGGGTATACTGTTTCTGGAGCTATAAAACACTCGAATTT  2300
                                                        
seq2  --------------------------------------------------  0

seq1  GTCTCTGGCATCTATGAGAGTGGGGATGGGCAATGTCGGAGGACAGGGGG  2350
                                                        
seq2  --------------------------------------------------  0

seq1  TGGCCAATCCAGTTTACCAGAACAATCCACTTCTTCCTCCAAAGTGTCTG  2400
                                                        
seq2  --------------------------------------------------  0

seq1  TGTCCCCAGGACCTAGAGGCCCTTCAGCCAAGGGTTTTTTTAAAGACTGG  2450
                                                        
seq2  --------------------------------------------------  0

seq1  ATTGATCATGTCAATAGGAGAAGGATCCACTGGGAGAAAGGGATAAAGAG  2500
                                                        
seq2  --------------------------------------------------  0

seq1  AAGCCTGCGGGGCTTCAGGCATGTCTGTAATTATTGAAGTACGTTTCTTG  2550
                                                        
seq2  --------------------------------------------------  0

seq1  GTGGGGAGGGAGCTCACTGAAGTCGCCCAAGACAAGGGGCAGAGACAGTA  2600
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCGCAACCTACAAAAGTTGCTGCTTCTCAGGATCATCAACTGTGCTTT  2650
                                                        
seq2  --------------------------------------------------  0

seq1  CTACTACATCACGAATGAATCCCCAATAAATGAAAACATTTGCAGGGACA  2700
                                                        
seq2  --------------------------------------------------  0

seq1  GCATCGGGGCCCTGCCTAGACAATATTTCATTTAATTCTCGACCTACCCT  2750
                                                        
seq2  --------------------------------------------------  0

seq1  TTGCCACTTTTTACAATGTATCTCTGCCCTGTCAATAATAAAACAGGGGC  2800
                                                       |
seq2  -------------------------------------------------C  1

seq1  AAGCTTGATCTATAAAAATAAAAAAGTTTATCAAATCTTTTTTCTTCATC  2850
      ||  || |||   |||||  | || |   | ||          |||||| 
seq2  AAAGTT-ATC---AAAAAAGACAAGGAGGAGCA----------CTTCAT-  36

seq1  CGAACTCCCCTTTGCCTGGCTGAAGCTTTCAGGTCTCTGATGAAGACAGC  2900
         ||||             | ||      ||||        || |    
seq2  ---ACTC------------ATCAA------AGGT--------AAAA----  53

seq1  TTTCTTTGACAGATTAGTTCCCATTTCTTAGCAGAGAGGAATTACTTACC  2950
        |||   | |||| |  || || |||| |  |   |  |||       |
seq2  --TCTACCA-AGATGAACTCTCAATTCTGAAAATCTACAAAT------GC  94

seq1  AAGGACGACTTCTCCTATGAGCTGTAGGAGCATTCCTCAAACAGCTTAGT  3000
      |||| |             ||||       ||||| |  || |       
seq2  AAGGGC-------------AGCT------ACATTCATTGAAGA------A  119

seq1  ATTCTAGT-AGAGACAAAATTCTCTTGGAGCCAGTCTCCATGGTCTCCAC  3049
      | | |||| ||   ||||   | | |||  ||   | | ||  |    | 
seq2  ACTTTAGTAAGGCTCAAAGCACACATGGCACCTCACACAATAAT----AG  165

seq1  CGGGCAAAGTTCCGTGCCTCAAGCCCCACGTTCTGGGCTCTACTCTGTCC  3099
       |||  |         | ||||    |||               ||||||
seq2  TGGGAGA---------CTTCAA----CAC---------------CTGTCC  187

seq1  TGTCCAGCAGGACTTAGTTATTCCATGGGTTGAGGAAGACCAAGGCCTGT  3149
      ||||||| ||||||||||||||||||||||  |||| |||  ||||||  
seq2  TGTCCAGAAGGACTTAGTTATTCCATGGGTCAAGGAGGACGGAGGCCTAC  237

seq1  AAGAGAAACGGGCGAAGAAAGGGAAGCGAGACCAAGCAAAGAATTGTCAA  3199
      |||||||| ||| | |||||||| ||| |||||||||||||| ||| |||
seq2  AAGAGAAATGGGTGGAGAAAGGGGAGCAAGACCAAGCAAAGAGTTGCCAA  287

seq1  GGTCTGTTTAATGGAGGCTAGGAGCCTGGTTATAAGCACACAATGAGAAA  3249
      ||||||||||||| ||| |||||||||| ||||||||||||| ||||| |
seq2  GGTCTGTTTAATGAAGGTTAGGAGCCTGATTATAAGCACACAGTGAGAGA  337

seq1  AAATAGGGAGGGGTCGAGAGAGTATAATAAAAATACAGAGAAAGGAATGG  3299
      |||||||||||||||||| | | ||||| |||||||||||||||| ||||
seq2  AAATAGGGAGGGGTCGAGGGGGCATAAT-AAAATACAGAGAAAGGGATGG  386

seq1  ACATCTGGGGCAGATACTGATTGCAGGCTTCAAACATCTTGCAGCTTATC  3349
      ||||||||||  ||| |||||| ||||||       |||||||| |||||
seq2  ACATCTGGGGTGGATGCTGATTACAGGCT-------TCTTGCAG-TTATC  428

seq1  TTGGAATGTCGGCCCTAAAATAGTCCTGGGCAGCCTTCAATC---ATCCT  3396
      |||||||||||||||| ||| |||||||| ||     ||| |   | | |
seq2  TTGGAATGTCGGCCCTGAAACAGTCCTGGACA-----CAAACAGAAACAT  473

seq1  GCAGTTTATCTTGGAGTGTCGGCCCTAA-CTAAACAGTCCCAGGAACCAA  3445
      | ||       || ||   | ||| ||| |||| |||| | ||| |  ||
seq2  GGAGGAGGAGGTGAAG---CTGCCTTAATCTAAGCAGTTCTAGGCATTAA  520

seq1  ATGGAGTCATGAAGGAGGAGGTGAAGCTGGCTTTATCTAAACAGTCCCAG  3495
       |||||   | ||||||||  ||||||||            ||||| | |
seq2  GTGGAGAACTAAAGGAGGA--TGAAGCTG------------CAGTCTC-G  555

seq1  GCGCCAAGTG-GAGACATGGAGGAGGGGTGAC  3526
      | |||  |||  |||||| || ||||||||||
seq2  GTGCCTGGTGTAAGACAT-GAAGAGGGGTGAC  586