BAC Information

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BAC

Clone NameB6Ng01-161M14
Chromosome9 (Build37)
Map Location 22,423,616 - 22,607,265
singlet/doubletdoublet
Overlap geneBbs9
Upstream geneSmarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, LOC100040805
Downstream geneBmper, LOC100040866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161M14.bB6Ng01-161M14.g
ACCDH954803DH954804
length1,0711,105
definitionDH954803|Mus musculus domesticus DNA, BAC clone: B6Ng01-161M14, 5' end.DH954804|Mus musculus domesticus DNA, BAC clone: B6Ng01-161M14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,423,616 - 22,424,621)(22,606,185 - 22,607,265)
sequence
gaattcaccacatttatctcaaggtagaccagtttgtagtaccattaaca
atgaatgaaggcttttcttttctacacaatctctccaacttttattttag
gttgctttcttgatctttgctattttgactggggtaagatgaaatctcaa
agttattttgttttccattttcctaattgctagggatggtgaacattgta
gccatttttttcccttcttttgagaactccctgtccattttttgaatgtt
tttttttttgtttgtttttgtttttgagttctttatgtattctgaatgtt
agtcctctgatacatagctggcaaagatttctctttggacttcctctttt
ttcagttgtttgcttctttagctgtgcaaaaggtttaagctttatgaagt
tacacttatcaatttttaggcaaatgcaaccctatccacaaaaccctttc
ctgcccttgcatgctgcaggcactgcctgggtcttccagcagtttcagtg
ttctggattttgcatttcgggttttgatttatttgtggttagttatgtcc
aaggtgatagatgatatgctcacctgcttttaacaaataactctgctgac
tacacctctctagggcgacagttactaactttcagcacttgggatatatc
ttcctttccttccctgcattttagggtagtgattaagatctgagatgatt
ttgttgtttctgactctatatgtgagctggcgttctccttaatgttttgg
tatttttacttttgatttgtagtgtggcatatattgtaaatagattattc
tctggatcaagactatttggggctctcaatgcctgttgtgttttgatgtc
catttctttcagtttgttatattttctggctttaattttattaaacacgt
ttttctatgtctttaggactttatactgctcccacccctgattcttaggc
ttagtctcttgaattaaaaaaaaaaaaatctctgggttgctgatctttgg
ctgtgattggtaaataatcttgggtttggtcctctctcctggaatatatc
ctccagcttggtcctctctgg
gaattccaggacagccaggggtgttacagagaaaccctgtctcaaaaaca
aaaacaaaaaacagaccaaaaagatccatatatcaaaaaatgctttgctc
ttattcaacacaaaaacatttggtgcagttcacaaaataaagagcataga
aaaagaggtagaatgtttcccttgtaaaaagtgatctttgaaaaacttta
cagttatggaagaacatctgtaattatttgagagattataataaaatgtg
gagtttcatcctctaaatgatgatagactaataattctgtgcttcaactc
tgtgtggatgcaaaagaatctgttcttgaatttattggacatgtagagaa
gaacacttgacaatgttgggacaatgtgaaggaaaacagtgtcatgccct
gctggagtccacaagggaatacagcccagaaggaaagaggggggagacag
actgacctgcctacagcaagcaggtagatggacaaacagccagtgctatc
tacaggaagacaaagccagtggctctgctttgatgagactcagcacggct
tctgtggattgatgctgtggaggcacagacgggggagtttataaatgaga
aatggcggagccaggggacacaaagtcctggctgtccagcactggcactc
gaactccatgcaggtgcctcagagcccaggcaaacacagaaccaggtgtg
aagcagaggactgcggtgctgggctccagagacatgacagatgacctcca
cagaaatggcaagaaggctgtttcaaatgccagcacgggcagtcaggtag
aaaggaaatggccagagggcaaggagctttccagaaaggaatttttaaaa
gattttgggaaatttgtatcttattatttttggggttatactagggtttg
gtcttattaaccacttattcagtgagtacatttttggtggggagttcctt
tggtgaatggtgttacctcactcaggatgatgccctcaagattattaaga
taaaatttcctaaacacatgaaacttcaagaaaaatgtagaacttaagtg
ttggacacctattgcccctccttagaaggtggggaacaaaaacacccttt
ggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_22423616_22424621
seq2: B6Ng01-161M14.b_108_1115

seq1  TTTCTTTTCTACACAATCTCTCCAACTTTTATTTTAGGTTGCTTTCTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCTACACAATCTCTCCAACTTTTATTTTAGGTTGCTTTCTTGA  50

seq1  TCTTTGCTATTTTGACTGGGGTAAGATGAAATCTCAAAGTTATTTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTATTTTGACTGGGGTAAGATGAAATCTCAAAGTTATTTTGTTT  100

seq1  TCCATTTTCCTAATTGCTAGGGATGGTGAACATTGTAGCCATTTTTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTCCTAATTGCTAGGGATGGTGAACATTGTAGCCATTTTTTTCC  150

seq1  CTTCTTTTGAGAACTCCCTGTCCATTTTTTGAATGTTTTTTTTTTTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTGAGAACTCCCTGTCCATTTTTTGAATGTTTTTTTTTTTGTTT  200

seq1  GTTTTTGTTTTTGAGTTCTTTATGTATTCTGAATGTTAGTCCTCTGATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTTTGAGTTCTTTATGTATTCTGAATGTTAGTCCTCTGATAC  250

seq1  ATAGCTGGCAAAGATTTCTCTTTGGACTTCCTCTTTTTTCAGTTGTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGGCAAAGATTTCTCTTTGGACTTCCTCTTTTTTCAGTTGTTTGC  300

seq1  TTCTTTAGCTGTGCAAAAGGTTTAAGCTTTATGAAGTTACACTTATCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGCTGTGCAAAAGGTTTAAGCTTTATGAAGTTACACTTATCAAT  350

seq1  TTTTAGGCAAATGCAACCCTATCCACAAAACCCTTTCCTGCCCTTGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGCAAATGCAACCCTATCCACAAAACCCTTTCCTGCCCTTGCATG  400

seq1  CTGCAGGCACTGCCTGGGTCTTCCAGCAGTTTCAGTGTTCTGGATTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGCACTGCCTGGGTCTTCCAGCAGTTTCAGTGTTCTGGATTTTGC  450

seq1  ATTTCGGGTTTTGATTTATTTGTGGTTAGTTATGTCCAAGGTGATAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGGGTTTTGATTTATTTGTGGTTAGTTATGTCCAAGGTGATAGATG  500

seq1  ATATGCTCACCTGCTTTTAACAAATAACTCTGCTGACTACACCTCTCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTCACCTGCTTTTAACAAATAACTCTGCTGACTACACCTCTCTAG  550

seq1  GGCGACAGTTACTAACTTTCAGCACTTGGGATATATCTTCCTTTCCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGACAGTTACTAACTTTCAGCACTTGGGATATATCTTCCTTTCCTTCC  600

seq1  CTGCATTTTAGGGTAGTGATTAAGATCTGAGATGATTTTGTTGTTTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTTTAGGGTAGTGATTAAGATCTGAGATGATTTTGTTGTTTCTGA  650

seq1  CTCTATATGTGAGCTGGCGTTCTCCTTAATGTTTTGGTATTTTTAC-TTT  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTCTATATGTGAGCTGGCGTTCTCCTTAATGTTTTGGTATTTTTACTTTT  700

seq1  GATTTGTAGTGTGGCATATATTGTAAATAGATTATTCTCTGGATCAAGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTAGTGTGGCATATATTGTAAATAGATTATTCTCTGGATCAAGAC  750

seq1  TATTTGGGGCTCTCAATGCCTGTTGTGTTTTGATGTCCATTTCTTTCAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGGGCTCTCAATGCCTGTTGTGTTTTGATGTCCATTTCTTTCAGT  800

seq1  TTGTTATATTTTCT-GCTTTAATTTTATTAAACACG-TTTTCTATGTCTT  847
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  TTGTTATATTTTCTGGCTTTAATTTTATTAAACACGTTTTTCTATGTCTT  850

seq1  TA-GACTTTATACTGCTCCCACCCCTGATTCTTAGGCTTAGTCTCTTGAA  896
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTTTATACTGCTCCCACCCCTGATTCTTAGGCTTAGTCTCTTGAA  900

seq1  TTAAAAAAAAAAAAAATCTCAGTGTTGCTGATCTTTGGCTGTGATTGTTA  946
      || ||||||||||||||||| | |||||||||||||||||||||||| ||
seq2  TT-AAAAAAAAAAAAATCTCTGGGTTGCTGATCTTTGGCTGTGATTGGTA  949

seq1  AATTAATCTT-GGTTTTGTCCTCTCTCCTGGAATATAATCCTCCAGCTTG  995
      || ||||||| ||||| ||||||||||||||||||| |||||||||||||
seq2  AA-TAATCTTGGGTTTGGTCCTCTCTCCTGGAATAT-ATCCTCCAGCTTG  997

seq1  GTCCTCTCTGG  1006
      |||||||||||
seq2  GTCCTCTCTGG  1008

seq1: chr9_22606185_22607265
seq2: B6Ng01-161M14.g_70_1174 (reverse)

seq1  CTTCC-AAGGGTG-TTTTGTTCCC--ACTTCTAAGGAGGGGC-ATA-GTG  44
      ||||| ||||||| ||||||||||   ||||||||||||||| ||| |||
seq2  CTTCCAAAGGGTGTTTTTGTTCCCCACCTTCTAAGGAGGGGCAATAGGTG  50

seq1  TCC-ACACTTCAG-TCTTCATTTTTCTTG-AGTTTCATGTGTTTAGGAAA  91
      ||| |||||| || ||| ||||||||||| ||||||||||||||||||||
seq2  TCCAACACTTAAGTTCTACATTTTTCTTGAAGTTTCATGTGTTTAGGAAA  100

seq1  TTGTATCTTA--TATCTTGAGGGCATCATCCTGAGTGAGGTAACA-CATT  138
      || |||||||   |||||||||||||||||||||||||||||||| ||||
seq2  TTTTATCTTAATAATCTTGAGGGCATCATCCTGAGTGAGGTAACACCATT  150

seq1  CA-CAAAGGAACT---CACACAATATGTACTCACTG-ATAAGTGGAT-AT  182
      || ||||||||||   |||  || |||||||||||| |||||||| | ||
seq2  CACCAAAGGAACTCCCCACCAAAAATGTACTCACTGAATAAGTGGTTAAT  200

seq1  TAGCCCAAAACCTAGTATA--CCCAAGA--TATAAGATAC-AATTTCCC-  226
       || ||||| |||||||||  ||||| |   ||||||||| |||||||| 
seq2  AAGACCAAACCCTAGTATAACCCCAAAAATAATAAGATACAAATTTCCCA  250

seq1  AAATCTTTTAAGAATTCCTTTCTGGAAAGCTCCTTG-CCTCTGGCCATTT  275
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  AAATCTTTTAAAAATTCCTTTCTGGAAAGCTCCTTGCCCTCTGGCCATTT  300

seq1  CCTTTCTACCTGACTGCCCGTGCTGGCATTTGAAACAGCCTTCTTGCCAT  325
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTACCTGACTGCCCGTGCTGGCATTTGAAACAGCCTTCTTGCCAT  350

seq1  TTCTGTGGAGGTCATCTGTCATGTCTCTGGAGCCCAGCACCGCAGTCCTC  375
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTCTGTGGAGGTCATCTGTCATGTCTCTGGAGCCCAGCACCGCAGTCCT-  399

seq1  CTGCTTCACACCTGGTTCTGTGTTTGCCTGGGCTCTGAGGCACCTGCATG  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCACACCTGGTTCTGTGTTTGCCTGGGCTCTGAGGCACCTGCATG  449

seq1  GAGTTCGAGTGCCAGTGCTGGACAGCCAGGACTTTGTGTCCCCTGGCTCC  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGAGTGCCAGTGCTGGACAGCCAGGACTTTGTGTCCCCTGGCTCC  499

seq1  GCCATTTCTCATTTATAAACTCCCCCGTCTGTGCCTCCACAGCATCAATC  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTCTCATTTATAAACTCCCCCGTCTGTGCCTCCACAGCATCAATC  549

seq1  CACAGAAGCCGTGCTGAGTCTCATCAAAGCAGAGCCACTGGCTTTGTCTT  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGCCGTGCTGAGTCTCATCAAAGCAGAGCCACTGGCTTTGTCTT  599

seq1  CCTGTAGATAGCACTGGCTGTTTGTCCATCTACCTGCTTGCTGTAGGCAG  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGATAGCACTGGCTGTTTGTCCATCTACCTGCTTGCTGTAGGCAG  649

seq1  GTCAGTCTGTCTCCCCCCTCTTTCCTTCTGGGCTGTATTCCCTTGTGGAC  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCTGTCTCCCCCCTCTTTCCTTCTGGGCTGTATTCCCTTGTGGAC  699

seq1  TCCAGCAGGGCATGACACTGTTTTCCTTCACATTGTCCCAACATTGTCAA  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAGGGCATGACACTGTTTTCCTTCACATTGTCCCAACATTGTCAA  749

seq1  GTGTTCTTCTCTACATGTCCAATAAATTCAAGAACAGATTCTTTTGCATC  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTCTCTACATGTCCAATAAATTCAAGAACAGATTCTTTTGCATC  799

seq1  CACACAGAGTTGAAGCACAGAATTATTAGTCTATCATCATTTAGAGGATG  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAGTTGAAGCACAGAATTATTAGTCTATCATCATTTAGAGGATG  849

seq1  AAACTCCACATTTTATTATAATCTCTCAAATAATTACAGATGTTCTTCCA  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCACATTTTATTATAATCTCTCAAATAATTACAGATGTTCTTCCA  899

seq1  TAACTGTAAAGTTTTTCAAAGATCACTTTTTACAAGGGAAACATTCTACC  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTAAAGTTTTTCAAAGATCACTTTTTACAAGGGAAACATTCTACC  949

seq1  TCTTTTTCTATGCTCTTTATTTTGTGAACTGCACCAAATGTTTTTGTGTT  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCTATGCTCTTTATTTTGTGAACTGCACCAAATGTTTTTGTGTT  999

seq1  GAATAAGAGCAAAGCATTTTTTGATATATGGATCTTTTTGGTCTGTTTTT  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGAGCAAAGCATTTTTTGATATATGGATCTTTTTGGTCTGTTTTT  1049

seq1  TGTTTTTGTTTTTGAGACAGGGTTTCTCTGTAACACCCCTGGCTGTCCTG  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTTTTTGAGACAGGGTTTCTCTGTAACACCCCTGGCTGTCCTG  1099

seq1  GAATTC  1081
      ||||||
seq2  GAATTC  1105