BAC Information

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BAC

Clone NameB6Ng01-162B01
Chromosome9 (Build37)
Map Location 122,376,217 - 122,482,079
singlet/doubletdoublet
Overlap geneLOC100040193, LOC100040204, 9530059O14Rik
Upstream geneTrak1, Cck, Lyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5
Downstream geneLOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162B01.bB6Ng01-162B01.g
ACCDH955002DH955003
length652565
definitionDH955002|Mus musculus domesticus DNA, BAC clone: B6Ng01-162B01, 5' end.DH955003|Mus musculus domesticus DNA, BAC clone: B6Ng01-162B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,481,428 - 122,482,079)(122,376,217 - 122,376,782)
sequence
gaattcctcaaatcaaagcgctttcccaaaccagggactggggaaactcg
aaaaagaggcccagaaggcgagtgacttcggacttgttctgcaagcttga
cttagtcattacaccaaacctcctgtgccctagaggatcccggggttccc
acacagtaggagggcatcccatgcctgcgctcccgctgggcactcaccta
ctgctagaaaagaagtcacaatctgtggtccagacttccgccgcagagaa
gcccagcacgcccacccagagggctagcgcgcctccgcgggtggtcggat
cacagggtgccgagggtacccactgaggtggccggacatctgggtgtctg
agcgcgccctccgaggtagtctgatcgctcgcgcccggtagggcggtggg
aacccgggcagctgctgcgaggagcgctcccgggcgggtccgcgccgagc
tcgagcgagcgggcgagcggggcgggaggggccatttgtaaccgagcaga
cgctaccaccgccccttactcgcggggggcgggggcgggcggtcaggtga
tggcggcccaccccgcgccgcggagcccggtggttcctgcccgggaggag
ccccctggcgcgctctgattggaactcccgctgcagtaggagggggaggg
gg
gaattcttctttgacaaatgggtaatttccacgtgtttaaaaaagcatat
ttggggctacccaggacatctttttgttgctgatttctagtttaatttca
agctggttagttttaaaaaaaatcatctattagctaaatctttgtatatc
ttggttcttttatatttcaggaaatgatgtggtgtgctgctgatatgtgt
gtgcgtgtttgttagtatatgttaattacatgttaattatgtatgatagt
gggtttggtgataaaattttatgcaagtatgtaatgcatttggccgtatc
catcgctcatttctgtcctcttcccatctccttggtcctagtttagggga
tattttatgcactcttgaacagaatattctagtaatgtcagcaaagccaa
aatggctggtggggcctctgaatttaccagggtccatggaatgtgtccac
tgggaaaaaagagttggtttgctatcaagggatttgccaactcctcttta
ctctgtcagagctctgacaatacccacctctaaaactgttatttggagtt
tatagataaaagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_122481428_122482079
seq2: B6Ng01-162B01.b_46_697 (reverse)

seq1  CCCCCTCCCCCTCCTACTGCAGCGGGAGTTCCAATCAGAGCGCGCCAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCCCCTCCTACTGCAGCGGGAGTTCCAATCAGAGCGCGCCAGGG  50

seq1  GGCTCCTCCCGGGCAGGAACCACCGGGCTCCGCGGCGCGGGGTGGGCCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTCCCGGGCAGGAACCACCGGGCTCCGCGGCGCGGGGTGGGCCGC  100

seq1  CATCACCTGACCGCCCGCCCCCGCCCCCCGCGAGTAAGGGGCGGTGGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCTGACCGCCCGCCCCCGCCCCCCGCGAGTAAGGGGCGGTGGTAG  150

seq1  CGTCTGCTCGGTTACAAATGGCCCCTCCCGCCCCGCTCGCCCGCTCGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGCTCGGTTACAAATGGCCCCTCCCGCCCCGCTCGCCCGCTCGCTC  200

seq1  GAGCTCGGCGCGGACCCGCCCGGGAGCGCTCCTCGCAGCAGCTGCCCGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCGGCGCGGACCCGCCCGGGAGCGCTCCTCGCAGCAGCTGCCCGGG  250

seq1  TTCCCACCGCCCTACCGGGCGCGAGCGATCAGACTACCTCGGAGGGCGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACCGCCCTACCGGGCGCGAGCGATCAGACTACCTCGGAGGGCGCG  300

seq1  CTCAGACACCCAGATGTCCGGCCACCTCAGTGGGTACCCTCGGCACCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACACCCAGATGTCCGGCCACCTCAGTGGGTACCCTCGGCACCCTG  350

seq1  TGATCCGACCACCCGCGGAGGCGCGCTAGCCCTCTGGGTGGGCGTGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCGACCACCCGCGGAGGCGCGCTAGCCCTCTGGGTGGGCGTGCTGG  400

seq1  GCTTCTCTGCGGCGGAAGTCTGGACCACAGATTGTGACTTCTTTTCTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCTGCGGCGGAAGTCTGGACCACAGATTGTGACTTCTTTTCTAGC  450

seq1  AGTAGGTGAGTGCCCAGCGGGAGCGCAGGCATGGGATGCCCTCCTACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTGAGTGCCCAGCGGGAGCGCAGGCATGGGATGCCCTCCTACTGT  500

seq1  GTGGGAACCCCGGGATCCTCTAGGGCACAGGAGGTTTGGTGTAATGACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAACCCCGGGATCCTCTAGGGCACAGGAGGTTTGGTGTAATGACTA  550

seq1  AGTCAAGCTTGCAGAACAAGTCCGAAGTCACTCGCCTTCTGGGCCTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGCTTGCAGAACAAGTCCGAAGTCACTCGCCTTCTGGGCCTCTTT  600

seq1  TTCGAGTTTCCCCAGTCCCTGGTTTGGGAAAGCGCTTTGATTTGAGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGTTTCCCCAGTCCCTGGTTTGGGAAAGCGCTTTGATTTGAGGAAT  650

seq1  TC  652
      ||
seq2  TC  652

seq1: chr9_122376217_122376782
seq2: B6Ng01-162B01.g_67_631

seq1  GAATTCTTCTTTGACAAATGGGTAATTTCCACGTGTTTAAAAAAGCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTTGACAAATGGGTAATTTCCACGTGTTTAAAAAAGCATAT  50

seq1  TTGGGGCTACCCAGGACATCTTTTTGTTGCTGATTTCTAGTTTAATTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCTACCCAGGACATCTTTTTGTTGCTGATTTCTAGTTTAATTTCA  100

seq1  AGCTGGTTAGTTTTAAAAAAAATCATCTATTAGCTAAATCTTTGTATATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTTAGTTTTAAAAAAAATCATCTATTAGCTAAATCTTTGTATATC  150

seq1  TTGGTTCTTTTATATTTCAGGAAATGATGTGGTGTGCTGCTGATATGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTTTTATATTTCAGGAAATGATGTGGTGTGCTGCTGATATGTGT  200

seq1  GTGCGTGTTTGTTAGTATATGTTAATTACATGTTAATTATGTATGATAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTGTTTGTTAGTATATGTTAATTACATGTTAATTATGTATGATAGT  250

seq1  GGGTTTGGTGATAAAATTTTATGCAAGTATGTAATGCATTTGGCCGTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGGTGATAAAATTTTATGCAAGTATGTAATGCATTTGGCCGTATC  300

seq1  CATCGCTCATTTCTGTCCTCTTCCCATCTCCTTGGTCCTAGTTTAGGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGCTCATTTCTGTCCTCTTCCCATCTCCTTGGTCCTAGTTTAGGGGA  350

seq1  TATTTTATGCACTCTTGAACAGAATATTCTAGTAATGTCAGCAAAGCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATGCACTCTTGAACAGAATATTCTAGTAATGTCAGCAAAGCCAA  400

seq1  AATGGCTGGTGGTGCCTCTGAATTTTCCATGGTCCATGGACTATGTCCAC  450
      |||||||||||| |||||||||||| ||| |||||||||| | |||||||
seq2  AATGGCTGGTGGGGCCTCTGAATTTACCAGGGTCCATGGAATGTGTCCAC  450

seq1  TGGGAAAAAAGAGTTGGTTTGCTATCAGCCAATTTGCCAACTCCTCTTCA  500
      |||||||||||||||||||||||||||    |||||||||||||||||  
seq2  TGGGAAAAAAGAGTTGGTTTGCTATCAAGGGATTTGCCAACTCCTCTT-T  499

seq1  ACTCTGTCTGAGCTCAGTCTATACCCACCAGGAGATCTGTTATTTGGTGG  550
      |||||||| |||||| | | |||||||||   | | ||||||||||| | 
seq2  ACTCTGTCAGAGCTCTGACAATACCCACCTCTAAAACTGTTATTTGGAGT  549

seq1  GTATAGATTTAAGTTT  566
       |||||||  ||||||
seq2  TTATAGATAAAAGTTT  565