BAC Information

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BAC

Clone NameB6Ng01-162C17
Chromosome9 (Build37)
Map Location 76,154,781 - 76,344,144
singlet/doubletdoublet
Overlap geneHcrtr2, C530008M07Rik
Upstream geneGnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1, Gfral
Downstream geneTinag, LOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162C17.bB6Ng01-162C17.g
ACCDH955076DH955077
length1,1101,121
definitionDH955076|Mus musculus domesticus DNA, BAC clone: B6Ng01-162C17, 5' end.DH955077|Mus musculus domesticus DNA, BAC clone: B6Ng01-162C17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,343,027 - 76,344,144)(76,154,781 - 76,155,716)
sequence
gaattctcttcttccttcttttctcatgtcctatagatattttctttttg
ttctgttttgttttgagacatgatttcaatttgtaatctaagctgcatag
aaatcatgtaaatacctcttccttctcctcccagtattaaggtttgcaag
catgacttaccgcctgaagttgagtgtggtatcttaagctactaggcttc
tacgcttcattattattggcattcaacttatacaaatatgatctgataca
gttcccacttcaacagtagtttggatttttttattaaatactttgaatat
cttcagaacaccatacctggggataaagatctcaataagctgtacagggt
acctgagataaaatttcctttaatgaacagtggaaatgattaacaaaatc
agagtacactgtgaagcatcagttagtaataggagatacagaaagactct
ggagactaaggtaaatgaatggtcagataagtactttgaatacaatggtt
gcaaagccctaaaaggatgtgagtcaaagactcagaaggaaaacagtatt
accaggaaagagcaactgcaaagatctggggacaaaagggtctgagaaat
gtatgattgaatatcttaggccagtggtaagatatccaggaagaaccaaa
aaaataatctgggaatggtggcacttgctagtaaccctagcgttcaagag
attgaggcaagaagatcccattgccatcctggataaaaacatataagagc
attctctaaggttaggcaaggatttgaattttattttaggaagttagaaa
gtcctatattggaatatgacataagccagtctttattgacttgtatgctg
tgtcagttgaccaatatggaaatgaagatgcttagattcaaatagcttat
gacacaatgacttgggtgacacagaattgtgagaatttttagatcagtgt
cagcagaacctgtttatttctgttagttctgggaaccagaatttttcaga
ggcacttccttgctttggggtgacactggaaggatactttgaacagtgac
ttactaagatagagtagagagagcttgtgtggatgtatttgcttaaactt
ctgcctgtat
gaattcatgccttgtactggaaactcaaatattcatgactggggaggtcg
tagacaccagggattgcttactactgttatattgtaaaatgggcatgact
tatacagccttctaaatgtttatatttacacacttagataggtgttattc
tcagcctttgatcagagaaaatcctttttgcaacaatgtatgtaaatgaa
aagactcttagctgttcaatgagctgaaataaatcactggcgagtgttca
gctctaaacgggacaccaatatcaccctttcatggaccagtaaacattac
agaagagggaacagaaaagcatataagaagcaggtgatgagaaggaaggg
tgtgaagcgctgtctctttggtatgacagatgctgcaattattaactcac
tgcagctgtgggtctctgcactgggcctctcaatattcagtcagagctag
tggaaaggatcataggaccatgccctccccgaagaactattgatcattga
tggatactggaaggactgtcattgtcttcagtggtattatcattagtggg
ccccatgctcccatggatgatagagccacaagcatgcacacacgacagcc
ttcattcacctgtgccacaaaactaaaccaaaagtacatggcagaaagaa
gtggacttgtaggaaggaagagatggagagtgtgagaggaaatgagaata
tagttttatgtttagtcagaatgcatgcatgcaattgtcaatgagtatgt
gttattaaaaaaaaagaaaggaattacaaagatcctgttacctttgtatg
ctagttaaaataatttaaaaaagcaccttcgtcatatttgtttactttat
ataatttacaattcagcatatataagaatgaaggaataaaatatatacat
tatacaatcacactacagggaatagagtgcaatatactgtgcatggcatg
tgggatgtgagcctccttgaagctgggagatccatgttgacattccccta
gcatggtgactcaacccttgttgccaagttcctctccttttctttcctct
cctctttcctctctctcctctaccaccataactatagttctttaccagtc
tttccgttctccatttaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_76343027_76344144
seq2: B6Ng01-162C17.b_49_1158 (reverse)

seq1  ATACAGGCAG-AGTTTTAGGCAATACATCCACACAAAGCTCTCTCTACTT  49
      |||||||||| ||||| ||  ||||||||||||| ||||||||||||| |
seq2  ATACAGGCAGAAGTTTAAGCAAATACATCCACAC-AAGCTCTCTCTAC-T  48

seq1  CTATCTTAGTTAAGTCACTGTTCCAAGTATCCTTTCAGTGGTCCACACAA  99
      ||||||||| ||||||||||||| |||||||||| |||| |||  | |||
seq2  CTATCTTAG-TAAGTCACTGTTCAAAGTATCCTTCCAGT-GTCACCCCAA  96

seq1  AGCAAGGAAGTGCCTCTGAATAAATTCTGGTTCCCAGAACTAACAGAAAT  149
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGCAAGGAAGTGCCTCTGAA-AAATTCTGGTTCCCAGAACTAACAGAAAT  145

seq1  AAACAGGTTCTGCTGACACTGATTCTAAAAATTCTCACAATTCTGTGTCA  199
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAACAGGTTCTGCTGACACTGA-TCTAAAAATTCTCACAATTCTGTGTCA  194

seq1  CCCAAGTCATTGTGTCATAAGCTATTTTGAATCTAAGCATCTTCATTTCC  249
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCCAAGTCATTGTGTCATAAGCTA-TTTGAATCTAAGCATCTTCATTTCC  243

seq1  ATATTGGTCAACTGACACAGCATACAAGTCAATAAAGACTGGCTTATGTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGTCAACTGACACAGCATACAAGTCAATAAAGACTGGCTTATGTC  293

seq1  ATATTCCAATATAGGACTTTCTAACTTTCCTAAAATAAAATTCAAATCCT  349
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATATTCCAATATAGGACTTTCTAAC-TTCCTAAAATAAAATTCAAATCCT  342

seq1  TGCCTAACCTTAGAGAATGCTCTTATATGTTTTTATCCCAGGATGGCAAT  399
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGCCTAACCTTAGAGAATGCTCTTATATGTTTTTAT-CCAGGATGGCAAT  391

seq1  GGGATCTTCTTGCCTCAATCTCTTGAACGCTAGGGTTACTAGCAAGTGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTTCTTGCCTCAATCTCTTGAACGCTAGGGTTACTAGCAAGTGCC  441

seq1  ACCATTCCCAGATTATTTTTTTGGTTCTTCCTGGATATCTTACCACTGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCCCAGATTATTTTTTTGGTTCTTCCTGGATATCTTACCACTGGC  491

seq1  CTAAGATATTCAATCATACATTTCTCAGACCCTTTTGTCCCCAGATCTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATATTCAATCATACATTTCTCAGACCCTTTTGTCCCCAGATCTTT  541

seq1  GCAGTTGCTCTTTCCTGGTAATACTGTTTTCCTTCTGAGTCTTTGACTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGCTCTTTCCTGGTAATACTGTTTTCCTTCTGAGTCTTTGACTCA  591

seq1  CATCCTTTTAGGGCTTTGCAACCATTGTATTCAAAGTACTTATCTGACCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTTTAGGGCTTTGCAACCATTGTATTCAAAGTACTTATCTGACCA  641

seq1  TTCATTTACCTTAGTCTCCAGAGTCTTTCTGTATCTCCTATTACTAACTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTACCTTAGTCTCCAGAGTCTTTCTGTATCTCCTATTACTAACTG  691

seq1  ATGCTTCACAGTGTACTCTGATTTTGTTAATCATTTCCACTGTTCATTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCACAGTGTACTCTGATTTTGTTAATCATTTCCACTGTTCATTAA  741

seq1  AGGAAATTTTATCTCAGGTACCCTGTACAGCTTATTGAGATCTTTATCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATTTTATCTCAGGTACCCTGTACAGCTTATTGAGATCTTTATCCC  791

seq1  CAGGTATGGTGTTCTGAAGATATTCAAAGTATTTAATAAAAAAATCCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATGGTGTTCTGAAGATATTCAAAGTATTTAATAAAAAAATCCAAA  841

seq1  CTACTGTTGAAGTGGGAACTGTATCAGATCATATTTGTATAAGTTGAATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTTGAAGTGGGAACTGTATCAGATCATATTTGTATAAGTTGAATG  891

seq1  CCAATAATAATGAAGCGTAGAAGCCTAGTAGCTTAAGATACCACACTCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAATAATGAAGCGTAGAAGCCTAGTAGCTTAAGATACCACACTCAA  941

seq1  CTTCAGGCGGTAAGTCATGCTTGCAAACCTTAATACTGGGAGGAGAAGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGCGGTAAGTCATGCTTGCAAACCTTAATACTGGGAGGAGAAGGA  991

seq1  AGAGGTATTTACATGATTTCTATGCAGCTTAGATTACAAATTGAAATCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTATTTACATGATTTCTATGCAGCTTAGATTACAAATTGAAATCAT  1041

seq1  GTCTCAAAACAAAACAGAACAAAAAGAAAATATCTATAGGACATGAGAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAACAAAACAGAACAAAAAGAAAATATCTATAGGACATGAGAAA  1091

seq1  AGAAGGAAGAAGAGAATTC  1118
      |||||||||||||||||||
seq2  AGAAGGAAGAAGAGAATTC  1110

seq1: chr9_76154781_76155716
seq2: B6Ng01-162C17.g_264_1188

seq1  TGAAAAGACTCTTAGCTGTTCAATGAGCTGAAATAAATCACTGGCGAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGACTCTTAGCTGTTCAATGAGCTGAAATAAATCACTGGCGAGTG  50

seq1  TTCAGCTCTAAACGGGACACCAATATCACCCTTTCATGGACCAGTAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTCTAAACGGGACACCAATATCACCCTTTCATGGACCAGTAAACA  100

seq1  TTACAGAAGAGGGAACAGAAAAGCATATAAGAAGCAGGTGATGAGAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAAGAGGGAACAGAAAAGCATATAAGAAGCAGGTGATGAGAAGGA  150

seq1  AGGGTGTGAAGCGCTGTCTCTTTGGTATGACAGATGCTGCAATTATTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTGAAGCGCTGTCTCTTTGGTATGACAGATGCTGCAATTATTAAC  200

seq1  TCACTGCAGCTGTGGGTCTCTGCACTGGGCCTCTCAATATTCAGTCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCAGCTGTGGGTCTCTGCACTGGGCCTCTCAATATTCAGTCAGAG  250

seq1  CTAGTGGAAAGGATCATAGGACCATGCCCTCCCCGAAGAACTATTGATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGGAAAGGATCATAGGACCATGCCCTCCCCGAAGAACTATTGATCA  300

seq1  TTGATGGATACTGGAAGGACTGTCATTGTCTTCAGTGGTATTATCATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGATACTGGAAGGACTGTCATTGTCTTCAGTGGTATTATCATTAG  350

seq1  TGGGCCCCATGCTCCCATGGATGATAGAGCCACAAGCATGCACACACGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCCATGCTCCCATGGATGATAGAGCCACAAGCATGCACACACGAC  400

seq1  AGCCTTCATTCACCTGTGCCACAAAACTAAACCAAAAGTACATGGCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCATTCACCTGTGCCACAAAACTAAACCAAAAGTACATGGCAGAA  450

seq1  AGAAGTGGACTTGTAGGAAGGAAGAGATGGAGAGTGTGAGAGGAAATGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGGACTTGTAGGAAGGAAGAGATGGAGAGTGTGAGAGGAAATGAG  500

seq1  AATATAGTTTTATGTTTAGTCAGAATGCATGCATGCAATTGTCAATGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGTTTTATGTTTAGTCAGAATGCATGCATGCAATTGTCAATGAGT  550

seq1  ATGTGTTATTAAAAAAAAAGAAAGGAATTACAAAGATCCTGTTACCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTATTAAAAAAAAAGAAAGGAATTACAAAGATCCTGTTACCTTTG  600

seq1  TATGCTAGTTAAAATAATTTAAAAAAGCACC-TCGTCATATTTGTTTACT  649
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATGCTAGTTAAAATAATTTAAAAAAGCACCTTCGTCATATTTGTTTACT  650

seq1  TTATATAATTTTACAATTCAGCATATATAAGAATGAAGGAATAAAATATA  699
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAA-TTTACAATTCAGCATATATAAGAATGAAGGAATAAAATATA  699

seq1  TACATTATACAATCACACTACAAGGAAATAGAGTGCAAATATACTGTGCA  749
      ||||||||||||||||||||| ||| |||||||||| |||||||||||||
seq2  TACATTATACAATCACACTAC-AGGGAATAGAGTGC-AATATACTGTGCA  747

seq1  TGGCATGTGGGATGTGAGCCTCCTTTGAAGCTGGGAGATCCCATGTTGAC  799
      ||||||||||||||||||||||| ||||||||||||||| ||||||||||
seq2  TGGCATGTGGGATGTGAGCCTCC-TTGAAGCTGGGAGAT-CCATGTTGAC  795

seq1  ATTCCCCTAGCAATGGTGACTCCAACCCTTGTTGCCAAGTTCCTTCTCCT  849
      ||||||||||| ||||||||| ||||||||||||||||||||| ||||||
seq2  ATTCCCCTAGC-ATGGTGACT-CAACCCTTGTTGCCAAGTTCC-TCTCCT  842

seq1  TTTCTTTTCCTCTCCTCTTTTCCTTCTCCTCCTCCTTCTACCCACCATAC  899
      |||| ||||||||||||||| |  |||    |||| |||| |||||||| 
seq2  TTTC-TTTCCTCTCCTCTTTCCTCTCT----CTCC-TCTA-CCACCATAA  885

seq1  CTTATTTTCTTTA-CAGTCTTTCCG-TCTACA-TTAATAA  936
      ||    ||||||| ||||||||||| ||| || |||||||
seq2  CTATAGTTCTTTACCAGTCTTTCCGTTCTCCATTTAATAA  925