BAC Information

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BAC

Clone NameB6Ng01-162G07
Chromosome9 (Build37)1 (Build37)
Map Location 48,499,113 - 48,499,16941,101,136 - 41,101,873
singlet/doubletsingletsinglet
Overlap geneZbtb16
Upstream geneCadm1, LOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt
Downstream geneHtr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5, EG235327, Drd2, Ankk1, Ttc12, Ncam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162G07.bB6Ng01-162G07.g
ACCDH955242DH955243
length783737
definitionDH955242|Mus musculus domesticus DNA, BAC clone: B6Ng01-162G07, 5' end.DH955243|Mus musculus domesticus DNA, BAC clone: B6Ng01-162G07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(48,499,113 - 48,499,169)(41,101,136 - 41,101,873)
sequence
gaattcaaggcactattatattcaaagagtgagtgccatagtatctggaa
caaggacaggattattattattactattatcattcactttacaccctgat
cactgccccaccactctatccccatcccacaatccccccccacaccaatc
ccctgtcctcttctcctctgagagagtggaggccctccctcggtacctcc
agatcccggtagatcaagtatttgctgggctaggtgcatcctctcacaat
aaggccagacaaggcagactggctacaagaaactatgccagctacagaaa
ggcaacaggctcagagacagccactctaggggttcaggacccccatgaag
accaagctgcacatctgctatatataacctgggaggctgaggtccagccc
atctatgttctttggttggtggttcagtctctgacagccccaagggtcca
ggttaattgactctgttggtcttcttttggagtttctatatcacttggga
ctgcaattcttcctcctattcttttataagactccttgttatgttttgta
tatgcttggcccagggagtagcactattagaagatatgtccctgggctgg
agagatggctcagtggttaagggcactgactgctcttccagacgtcatga
gttcaattcctagcagccacatgttggctcacaatcatatgtaatgtgat
actctcttctggagtgtctgaagatagctataatgtactcacatataaca
aataaatcttgaaaaagaacgaagaggaggagg
gaattcctccttccttcccatgagatggtttctgtgctgttcagtaaata
gagagcaaagcctttcgttaaggacagacacagggaaggtaaaattcaga
ctcctataacagacagacaaaggaaagaagacactgggagcaagaagtag
aagattcgagtctggactctttctttgttaaatgactccaaaggaaaaac
atttgtatttctctacttaatgtggcacaggtacattattcataactcag
agttaatcactaatgaatttaatacatgaatctccatcataatatgcctg
atatcattaacttacaaaattttttggcattcatagatttgaaggtttgg
tccatgattgagtgacctcatggccgtgttctctgttagttaaggtgaga
tgtcatggcaggagtgcacaagccagcaaattgcctacctcacaaagcag
acaacacccagtcactgaagtactttctaatgagccctgtttcctaaaat
gtttatcatctctaagtaacatgaagtcatagattatagatgttggattc
caggttgctacaggaattattaggatagccaagaaagtttaaggaccaaa
gacctcaaccttcataattctttttttttttttctttttcaagacagggt
ttctctgtgtagccctgactgttctggaactcactttgtagaccagggtg
tcctcgactcagaatctgcctgcctctgctttctgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_48499113_48499169
seq2: B6Ng01-162G07.b_644_700 (reverse)

seq1  TTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCC  50
      ||||||||| ||| |||||||||||||||||||| ||||||  |||||||
seq2  TTGAACTCATGACGTCTGGAAGAGCAGTCAGTGCCCTTAACCACTGAGCC  50

seq1  ATCTCTC  57
      |||||||
seq2  ATCTCTC  57

seq1: chr1_41101136_41101873
seq2: B6Ng01-162G07.g_67_803

seq1  GAATTCCTCCTTCCTTCCCATGAGATGGTTTCTGTGCTGTTCAGTAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTTCCTTCCCATGAGATGGTTTCTGTGCTGTTCAGTAAATA  50

seq1  GAGAGCAAAGCCTTTCGTTAAGGACAGACACAGGGAAGGTAAAATTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAAAGCCTTTCGTTAAGGACAGACACAGGGAAGGTAAAATTCAGA  100

seq1  CTCCTATAACAGACAGACAAAGGAAAGAAGACACTGGGAGCAAGAAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATAACAGACAGACAAAGGAAAGAAGACACTGGGAGCAAGAAGTAG  150

seq1  AAGATTCGAGTCTGGACTCTTTCTTTGTTAAATGACTCCAAAGGAAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCGAGTCTGGACTCTTTCTTTGTTAAATGACTCCAAAGGAAAAAC  200

seq1  ATTTGTATTTCTCTACTTAATGTGGCACAGGTACATTATTCATAACTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATTTCTCTACTTAATGTGGCACAGGTACATTATTCATAACTCAG  250

seq1  AGTTAATCACTAATGAATTTAATACATGAATCTCCATCATAATATGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATCACTAATGAATTTAATACATGAATCTCCATCATAATATGCCTG  300

seq1  ATATCATTAACTTACAAAATTTTTTGGCATTCATAGATTTGAAGGTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTAACTTACAAAATTTTTTGGCATTCATAGATTTGAAGGTTTGG  350

seq1  TCCATGATTGAGTGACCTCATGGCCGTGTTCTCTGTTAGTTAAGGTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGATTGAGTGACCTCATGGCCGTGTTCTCTGTTAGTTAAGGTGAGA  400

seq1  TGTCATGGCAGGAGTGCACAAGCCAGCAAATTGCCTACCTCACAAAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGGCAGGAGTGCACAAGCCAGCAAATTGCCTACCTCACAAAGCAG  450

seq1  ACAACACCCAGTCACTGAAGTACTTTCTAATGAGCCCTGTTTCCTAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACCCAGTCACTGAAGTACTTTCTAATGAGCCCTGTTTCCTAAAAT  500

seq1  GTTTATCATCTCTAAGTAACATGAAGTCATAGATTATAGATGTTGGATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCATCTCTAAGTAACATGAAGTCATAGATTATAGATGTTGGATTC  550

seq1  CAGGTTGCTACAGGAATTATTAGGATAGCCAAGAAAGTTTAAGGACCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGCTACAGGAATTATTAGGATAGCCAAGAAAGTTTAAGGACCAAA  600

seq1  GACCTCAACCTTCATAATTCTTTTTTTTTTTTTCTTTTTCAAGACAGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCAACCTTCATAATTCTTTTTTTTTTTTTCTTTTTCAAGACAGGGT  650

seq1  TTCTCTGTGTAGCCCTGACTGTTCTGGAACTCACTTTGTAGACCAGGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTCTCTGTGTAGCCCTGACTGTTCTGGAACTCACTTTGTAGACCAGGGTG  700

seq1  TCCTCGACTCAGAAATCTGCCTGCCTCTGCTTCCTGAG  738
      |||||||||||| ||||||||||||||||||| |||||
seq2  TCCTCGACTCAG-AATCTGCCTGCCTCTGCTTTCTGAG  737