BAC Information

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BAC

Clone NameB6Ng01-163A04
Chromosome9 (Build37)
Map Location 114,184,025 - 114,318,717
singlet/doubletdoublet
Overlap gene4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1
Upstream geneLOC100043802, LOC636680, Pdcd6ip, Clasp2, Ubp1, Fbxl2, Susd5, EG665719
Downstream geneCcr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8, Gpd1l, LOC100043813, Osbpl10, LOC100043812, Stt3b, LOC100039567, LOC670467
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163A04.bB6Ng01-163A04.g
ACCDH955703DH955704
length1,0131,107
definitionDH955703|Mus musculus domesticus DNA, BAC clone: B6Ng01-163A04, 5' end.DH955704|Mus musculus domesticus DNA, BAC clone: B6Ng01-163A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,184,025 - 114,184,726)(114,317,608 - 114,318,717)
sequence
gaattctaccctcaatcatgagatattcaaaaattactacatcaagtaac
cgagagaaagtatgagagggtggttcacgcattcctgtctataccagggg
acgccccaatgactcacataggataagcctcagcttcagactggttcatg
ccattgaattagagtgtgaggtgatgttaaatgcatttaaaattctgggg
ttatatttatacttaagatcagataggggactaatatccaacatatataa
agaactcaagaaggtggacttcagaaaatcaaatatccccattaaaaaaa
tggggctcagaactgaacaaagaattctcacctgaggaataccgaatggc
agagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgc
aaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaag
atcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagagg
aacactcctccattgttggtgggattgcaggcttgtacaaccactctgga
aatcagtctggcggttcctcagaaaattggacatagtactaccggaggat
ccaacaatacctctcctgggcatatatccagaagatgccccaactggtaa
gaaggacacatgctccactatgttcatagcagccttatttataatagcca
gaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaa
atgtggtacatttacacaatggaatactactcagctattaaaaaatgaat
ttatgaaattcctaggcaaatggatggacctggagggtatcatcctgagt
gaagtaacccaatcacaaaggaactcgcacaatatgtactcactgataag
tggatattagcccagaaacttaggatacccaagatataagatacaaattg
ccaaacgcatgaaattctagaagacgagaccaagtgtggacactctaccc
tttcttagaaatg
gaattccagggctacaccctgagaccctgtctccaaacaacacaaaacaa
gagaacaaacagaacagagatggatggaatggggagcagaagaaaaccac
aggagagtaagcaaaacggataattggcaacacaagtgtcagccctttag
ctacaccccaacaacagaattcagaagggaaatggggcatagaaaaactg
gaaccacagaaataaaagtgaccgtcagagggcgggcatggcagcacgag
ggcagaagagtttgaattccagagcagctggcctccttaggacggagtca
atgggggacagagaaggaaatgtcatgaacactgcgcatgtgctaacatg
cttgagagcccggaaggcatgaagaaggtgaagaaacagatcaaggagac
aggacctgatgagaacacagaatcatcacttcccttctattaggatacag
accttcagaagaacaggcagtctcatctcgttgcaattattttctttcta
ttaccgtatctgcgttgtgtgtaaatgtgggcccacatggcaccgcatcc
gtgcgggaggtcggggaacagttctgtggggttggttctctccttccacc
atgagttccagagatggaactgaagtgaggcttgtgaggccgcctgttga
gacacctcactgtcccgctgtttttcctttctgtgatgtcctgagattga
acccagggactcagacttgcaaggcaagtttatctctcaccgagaggtaa
cccaaccccattgtgttcagagaggatgaaggagccaggtgggggtgaca
catgctggcatccagctcttggggaggcagaggcaggaggatagcctcga
gttgaaggccatctggtatacaaagcatgaccctgcctcaaaacaaacaa
acaaacaaacaaacaacaacaaaacacctgaaagccaaaataggcgatgt
gtgcacacagatcacaaggtgacagtatcaaaatgagacccaggatgggt
ctaatgccctgaagagaaagattcagacggctcagtctgatgaattccaa
agctgagaaaacagaaaggacagccgtgatcccaaaaaggctgaaacagc
aaaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_114184025_114184726
seq2: B6Ng01-163A04.b_51_752

seq1  GAATTCTACCCTCAATCATGAGATATTCAAAAATTACTACATCAAGTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCCTCAATCATGAGATATTCAAAAATTACTACATCAAGTAAC  50

seq1  CGAGAGAAAGTATGAGAGGGTGGTTCACGCATTCCTGTCTATACCAGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGAAAGTATGAGAGGGTGGTTCACGCATTCCTGTCTATACCAGGGG  100

seq1  ACGCCCCAATGACTCACATAGGATAAGCCTCAGCTTCAGACTGGTTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCCAATGACTCACATAGGATAAGCCTCAGCTTCAGACTGGTTCATG  150

seq1  CCATTGAATTAGAGTGTGAGGTGATGTTAAATGCATTTAAAATTCTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGAATTAGAGTGTGAGGTGATGTTAAATGCATTTAAAATTCTGGGG  200

seq1  TTATATTTATACTTAAGATCAGATAGGGGACTAATATCCAACATATATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTATACTTAAGATCAGATAGGGGACTAATATCCAACATATATAA  250

seq1  AGAACTCAAGAAGGTGGACTTCAGAAAATCAAATATCCCCATTAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAAGAAGGTGGACTTCAGAAAATCAAATATCCCCATTAAAAAAA  300

seq1  TGGGGCTCAGAACTGAACAAAGAATTCTCACCTGAGGAATACCGAATGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTCAGAACTGAACAAAGAATTCTCACCTGAGGAATACCGAATGGC  350

seq1  AGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC  400

seq1  AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG  450

seq1  ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGG  500

seq1  AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA  550

seq1  AATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGAT  600

seq1  CCAACAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA  650

seq1  GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA  700

seq1  GA  702
      ||
seq2  GA  702

seq1: chr9_114317608_114318717
seq2: B6Ng01-163A04.g_66_1172 (reverse)

seq1  CATTTCTGCTGTTTCAGCCCTTTTGGGATCACGGCTGTCCTTTCTGTTCT  50
      ||||| ||||||||||||| |||||||||||||||||||||||||||| |
seq2  CATTTTTGCTGTTTCAGCCTTTTTGGGATCACGGCTGTCCTTTCTGTT-T  49

seq1  CCTCAGCTTTGGAATTCATCAGACTGAGCCGTCTGGATCTTTCTCTTCAG  100
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTCAGCTTTGGAATTCATCAGACTGAGCCGTCTGAATCTTTCTCTTCAG  99

seq1  GGCATTAGACCCATCCTGGGTCTCATTTTGATACTGTCACCTTGTGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTAGACCCATCCTGGGTCTCATTTTGATACTGTCACCTTGTGATCT  149

seq1  GTGTGCACACATCGCCTATTTTGGCTTTCAGGTTGTTTTGTTGTTGTTTG  200
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTGTGCACACATCGCCTATTTTGGCTTTCAGG-TGTTTTGTTGTTGTTTG  198

seq1  TTTGTTTGTTTGTTTGTTTTTGAGGCAGGGTCCTGCTTTGTATACCAGAT  250
      |||||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  TTTGTTTGTTTGTTTG-TTTTGAGGCAGGGTCATGCTTTGTATACCAGAT  247

seq1  GGCCTTCAACTCGAGGCTATCCTCCTGCCTCTGCCTCCCCAAGAGCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCAACTCGAGGCTATCCTCCTGCCTCTGCCTCCCCAAGAGCTGGA  297

seq1  TGCCAGCATGTGTCACCCCCACCTGGCTCCTTCATCCTCTCTGAACACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCATGTGTCACCCCCACCTGGCTCCTTCATCCTCTCTGAACACAA  347

seq1  TGGGGTTGGGTTACCTCTCGGTGAGAGATAAACTTGCCTTGCAAGTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTGGGTTACCTCTCGGTGAGAGATAAACTTGCCTTGCAAGTCTGA  397

seq1  GTCCCTGGGTTCAATCTCAGGACATCACAGAAAGGAAAAACAGCGGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGGGTTCAATCTCAGGACATCACAGAAAGGAAAAACAGCGGGACA  447

seq1  GTGAGGTGTCTCAACAGGCGGCCTCACAAGCCTCACTTCAGTTCCATCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTGTCTCAACAGGCGGCCTCACAAGCCTCACTTCAGTTCCATCTC  497

seq1  TGGAACTCATGGTGGAAGGAGAGAACCAACCCCACAGAACTGTTCCCCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCATGGTGGAAGGAGAGAACCAACCCCACAGAACTGTTCCCCGA  547

seq1  CCTCCCGCACGGATGCGGTGCCATGTGGGCCCACATTTACACACAACGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCGCACGGATGCGGTGCCATGTGGGCCCACATTTACACACAACGCA  597

seq1  GATACGGTAATAGAAAGAAAATAATTGCAACGAGATGAGACTGCCTGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACGGTAATAGAAAGAAAATAATTGCAACGAGATGAGACTGCCTGTTC  647

seq1  TTCTGAAGGTCTGTATCCTAATAGAAGGGAAGTGATGATTCTGTGTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGGTCTGTATCCTAATAGAAGGGAAGTGATGATTCTGTGTTCTC  697

seq1  ATCAGGTCCTGTCTCCTTGATCTGTTTCTTCACCTTCTTCATGCCTTCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTCCTGTCTCCTTGATCTGTTTCTTCACCTTCTTCATGCCTTCCG  747

seq1  GGCTCTCAAGCATGTTAGCACATGCGCAGTGTTCATGACATTTCCTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCAAGCATGTTAGCACATGCGCAGTGTTCATGACATTTCCTTCTC  797

seq1  TGTCCCCCATTGACTCCGTCCTAAGGAGGCCAGCTGCTCTGGAATTCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCCATTGACTCCGTCCTAAGGAGGCCAGCTGCTCTGGAATTCAAA  847

seq1  CTCTTCTGCCCTCGTGCTGCCATGCCCGCCCTCTGACGGTCACTTTTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGCCCTCGTGCTGCCATGCCCGCCCTCTGACGGTCACTTTTATT  897

seq1  TCTGTGGTTCCAGTTTTTCTATGCCCCATTTCCCTTCTGAATTCTGTTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGTTCCAGTTTTTCTATGCCCCATTTCCCTTCTGAATTCTGTTGT  947

seq1  TGGGGTGTAGCTAAAGGGCTGACACTTGTGTTGCCAATTATCCGTTTTGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGTAGCTAAAGGGCTGACACTTGTGTTGCCAATTATCCGTTTTGC  997

seq1  TTACTCTCCTGTGGTTTTCTTCTGCTCCCCATTCCATCCATCTCTGTTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTCCTGTGGTTTTCTTCTGCTCCCCATTCCATCCATCTCTGTTCT  1047

seq1  GTTTGTTCTCTTGTTTTGTGTTGTTTGGAGACAGGGTCTCAGGGTGTAGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTCTCTTGTTTTGTGTTGTTTGGAGACAGGGTCTCAGGGTGTAGC  1097

seq1  CCTGGAATTC  1110
      ||||||||||
seq2  CCTGGAATTC  1107