BAC Information

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BAC

Clone NameB6Ng01-163J08
Chromosome9 (Build37)
Map Location 113,682,784 - 113,811,669
singlet/doubletdoublet
Overlap geneClasp2
Upstream geneEG622110, LOC100039391, LOC100043801, LOC100043802, LOC636680, Pdcd6ip
Downstream geneUbp1, Fbxl2, Susd5, EG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8, Gpd1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163J08.bB6Ng01-163J08.g
ACCDH956132DH956133
length1,1321,140
definitionDH956132|Mus musculus domesticus DNA, BAC clone: B6Ng01-163J08, 5' end.DH956133|Mus musculus domesticus DNA, BAC clone: B6Ng01-163J08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,810,539 - 113,811,669)(113,682,784 - 113,683,935)
sequence
gaattctataatcaaactctaaattcaattaaggctagaatttacccagc
aaaattgtcacaaatctattaaccaatagattcggtggtaagatctgata
catttttctttcctaaactctgatttaacattctgtaattttaatggata
atctcatgaagcaagccatgatgtataaccaataacaaaacttaggctac
taattgtaatagatgttgtaagacattttacaaaaggcctccaaaagggt
catggtggctactgactaatgaatcaagaatttgatctagggctagcaag
atggcctgttgggtaaaggtgcttgctgctgagcaagcctggacacttgt
actatatccctagaacccccagtggaagaaggaaaaccactcctgaaggc
tgtctcctgacagccacatgaatcttttgtcccatgtggacctgcactct
cacacccaatttaaaaaaagaaaaaaaagaggaatgggagattttaatct
caaatatatccatgctcgaactgtgtgaaaatgttacctcttttttgtgt
attaagcagcaatatcttagtcacatgttttcctagagcatacgtagtgc
cattaggtattcatgatagattgaactcttccccagtcttcgtctcttta
tgctttgtctatctatcagctcaagtcccgcctgacctttcaaggaggac
atcagtatgctatctaataccataactaatacttgtcattcatactaagt
gatgtaataaaaaagataggctcatttgcaatttaagaaatataactata
gtcttttagaaaacaatacctttcatcctatatattgccatttaaagggt
taaattttacagttgtttgaatcagctcattttaagtcaaatgaaagtct
gagattatagttaactctgcctttctaagaatggagatttggggcaatca
tctgaccttggagattacgtattctgagacgtggtgggtaggagaagtaa
gaggactggaccagtttggcttgtgaccgagtgttggtctcgtcaaggac
tccccatggaactctgagggagggagtagagatcgtcagcacaagggagt
gccaacagttctgggggagaagaggcagtcat
gaattctttgacaggtgagaaatgctgcactatcagctgtagtggagatt
tatagacacgtaggagagaagctgaggattgatttgtgtaaaagagacat
tccccctgctaggtaagtcttaaatatatatatattttttgctacagttg
tatttgtatctactttactaattaacgtcattctattacagccaggcagg
tgtggtggtggtgcacacctttaatcccaggatgtgggaggcagaggcag
gcagatctttgtggtctgggcagctaggcctacatagagagttccagtga
gccaggggtccataacagttttagtttcctgagtttcctggaaccagttt
gtagacatagaactgaccagtgccggcactgtgctcatgtagcttcaggt
ttccttcaactctgctttcaaagtgcttagtattttcagggtagggtgtg
tgaattagagctttttccatagctcgtcttgccacctgcaatgacagctt
tatttttccctgtctgtacatttctcatttccctttcttgtccttattgt
ctaggatttcctatgtgctattgagaaagagtagaatgggttacattctt
gccttgttctgatcttagaacaattctagtttcttcacattaagattgag
gttagttgctaggtggtagtgcacacctttaaccccagcacttggaaggc
agaggtaggcagatctcttgtcagtttgaagctactgagaccctgtctca
aaataaataaataaataaataatataaataaataaataaaaaataaaaga
atgatgctagctgtaggtttttggtaggtattctttttttttaaaagagt
ttttactttttaaagttacgtttttatttgggggtttgagtgacactgtc
atgttggggagtcttcaggctatcttacagcacctttttgtcgctaatct
tttttattttttaaactttcattggttcttttggaattcacataatggta
ctcaaatcccactcatctcccccttcccctcgtaacaactcttagcatac
accttccacaaagagggaaataatctaatgtgggagctgacgagtccagg
ggtgtccgcaggtgtcccttggtccacacttctttgcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_113810539_113811669
seq2: B6Ng01-163J08.b_45_1176 (reverse)

seq1  ATGACTGCCTCTTCT-CCCCAGACTTTGTTGCACTCCCCTGTGCTGACGA  49
      ||||||||||||||| |||||||  |  | |||||||| |||||||||||
seq2  ATGACTGCCTCTTCTCCCCCAGAACTGTTGGCACTCCCTTGTGCTGACGA  50

seq1  TCTTCTTACTCCCTCCCTCAGAGTTCCATGGGGAGTCCTTTGACGAGACC  99
      |||   |||||||||||||||||||||||||||||||| |||||||||||
seq2  TCT--CTACTCCCTCCCTCAGAGTTCCATGGGGAGTCC-TTGACGAGACC  97

seq1  AACACCTCGGTCACCAGCC-AACTGGTCCAGTCCTCTTACTTCTCCTA-C  147
      |||| ||||||||| |||| |||||||||||||||||||||||||||| |
seq2  AACA-CTCGGTCACAAGCCAAACTGGTCCAGTCCTCTTACTTCTCCTACC  146

seq1  CAACACGTCTCAGAATACGTTATCTCCAAGGTCAGATGATTGCCC--AAT  195
      || ||||||||||||||||| ||||||||||||||||||||||||  |||
seq2  CACCACGTCTCAGAATACGTAATCTCCAAGGTCAGATGATTGCCCCAAAT  196

seq1  CTCCATTCTTAGAAAGGCAGAGTTAACTATAATCTCAGACTTTCATTTGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTCTTAGAAAGGCAGAGTTAACTATAATCTCAGACTTTCATTTGA  246

seq1  CTTGAAATGAGCTGATTCAAACAACTGTAAAATTTAACCCTTTAAATGGC  295
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATGAGCTGATTCAAACAACTGTAAAATTTAACCCTTTAAATGGC  296

seq1  AATATATAGGATGAAAGGTATTGTTTTCTAAAAGACTATAGTTATATTTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAGGATGAAAGGTATTGTTTTCTAAAAGACTATAGTTATATTTC  346

seq1  TTAAATTGCAAATGAGCCTATCTTTTTTATTACATCACTTAGTATGAATG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTGCAAATGAGCCTATCTTTTTTATTACATCACTTAGTATGAATG  396

seq1  ACAAGTATTAGTTATGGTATTAGATAGCATACTGATGTCCTCCTTGAAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTATTAGTTATGGTATTAGATAGCATACTGATGTCCTCCTTGAAAG  446

seq1  GTCAGGCGGGACTTGAGCTGATAGATAGACAAAGCATAAAGAGACGAAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCGGGACTTGAGCTGATAGATAGACAAAGCATAAAGAGACGAAGA  496

seq1  CTGGGGAAGAGTTCAATCTATCATGAATACCTAATGGCACTACGTATGCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAAGAGTTCAATCTATCATGAATACCTAATGGCACTACGTATGCT  546

seq1  CTAGGAAAACATGTGACTAAGATATTGCTGCTTAATACACAAAAAAGAGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAAAACATGTGACTAAGATATTGCTGCTTAATACACAAAAAAGAGG  596

seq1  TAACATTTTCACACAGTTCGAGCATGGATATATTTGAGATTAAAATCTCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTTCACACAGTTCGAGCATGGATATATTTGAGATTAAAATCTCC  646

seq1  CATTCCTCTTTTTTTTCTTTTTTTAAATTGGGTGTGAGAGTGCAGGTCCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTCTTTTTTTTCTTTTTTTAAATTGGGTGTGAGAGTGCAGGTCCA  696

seq1  CATGGGACAAAAGATTCATGTGGCTGTCAGGAGACAGCCTTCAGGAGTGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGACAAAAGATTCATGTGGCTGTCAGGAGACAGCCTTCAGGAGTGG  746

seq1  TTTTCCTTCTTCCACTGGGGGTTCTAGGGATATAGTACAAGTGTCCAGGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTCTTCCACTGGGGGTTCTAGGGATATAGTACAAGTGTCCAGGC  796

seq1  TTGCTCAGCAGCAAGCACCTTTACCCAACAGGCCATCTTGCTAGCCCTAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGCAGCAAGCACCTTTACCCAACAGGCCATCTTGCTAGCCCTAG  846

seq1  ATCAAATTCTTGATTCATTAGTCAGTAGCCACCATGACCCTTTTGGAGGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTCTTGATTCATTAGTCAGTAGCCACCATGACCCTTTTGGAGGC  896

seq1  CTTTTGTAAAATGTCTTACAACATCTATTACAATTAGTAGCCTAAGTTTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTAAAATGTCTTACAACATCTATTACAATTAGTAGCCTAAGTTTT  946

seq1  GTTATTGGTTATACATCATGGCTTGCTTCATGAGATTATCCATTAAAATT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGGTTATACATCATGGCTTGCTTCATGAGATTATCCATTAAAATT  996

seq1  ACAGAATGTTAAATCAGAGTTTAGGAAAGAAAAATGTATCAGATCTTACC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGTTAAATCAGAGTTTAGGAAAGAAAAATGTATCAGATCTTACC  1046

seq1  ACCGAATCTATTGGTTAATAGATTTGTGACAATTTTGCTGGGTAAATTCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAATCTATTGGTTAATAGATTTGTGACAATTTTGCTGGGTAAATTCT  1096

seq1  AGCCTTAATTGAATTTAGAGTTTGATTATAGAATTC  1131
      ||||||||||||||||||||||||||||||||||||
seq2  AGCCTTAATTGAATTTAGAGTTTGATTATAGAATTC  1132

seq1: chr9_113682784_113683935
seq2: B6Ng01-163J08.g_69_1208

seq1  GAATTCTTTGACAGGTGAGAAATGCTGCACTATCAGCTGTAGTGGAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGACAGGTGAGAAATGCTGCACTATCAGCTGTAGTGGAGATT  50

seq1  TATAGACACGTAGGAGAGAAGCTGAGGATTGATTTGTGTAAAAGAGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACACGTAGGAGAGAAGCTGAGGATTGATTTGTGTAAAAGAGACAT  100

seq1  TCCCCCTGCTAGGTAAGTCTTAAATATATATATATTTTTTGCTACAGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTGCTAGGTAAGTCTTAAATATATATATATTTTTTGCTACAGTTG  150

seq1  TATTTGTATCTACTTTACTAATTAACGTCATTCTATTACAGCCAGGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTATCTACTTTACTAATTAACGTCATTCTATTACAGCCAGGCAGG  200

seq1  TGTGGTGGTGGTGCACACCTTTAATCCCAGGATGTGGGAGGCAGAGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGGTGGTGCACACCTTTAATCCCAGGATGTGGGAGGCAGAGGCAG  250

seq1  GCAGATCTTTGTGGTCTGGGCAGCTAGGCCTACATAGAGAGTTCCAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCTTTGTGGTCTGGGCAGCTAGGCCTACATAGAGAGTTCCAGTGA  300

seq1  GCCAGGGGTCCATAACAGTTTTAGTTTCCTGAGTTTCCTGGAACCAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGGTCCATAACAGTTTTAGTTTCCTGAGTTTCCTGGAACCAGTTT  350

seq1  GTAGACATAGAACTGACCAGTGCCGGCACTGTGCTCATGTAGCTTCAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACATAGAACTGACCAGTGCCGGCACTGTGCTCATGTAGCTTCAGGT  400

seq1  TTCCTTCAACTCTGCTTTCAAAGTGCTTAGTATTTTCAGGGTAGGGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCAACTCTGCTTTCAAAGTGCTTAGTATTTTCAGGGTAGGGTGTG  450

seq1  TGAATTAGAGCTTTTTCCATAGCTCGTCTTGCCACCTGCAATGACAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAGAGCTTTTTCCATAGCTCGTCTTGCCACCTGCAATGACAGCTT  500

seq1  TATTTTTCCCTGTCTGTACATTTCTCATTTCCCTTTCTTGTCCTTATTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCCCTGTCTGTACATTTCTCATTTCCCTTTCTTGTCCTTATTGT  550

seq1  CTAGGATTTCCTATGTGCTATTGAGAAAGAGTAGAATGGGTTACATTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATTTCCTATGTGCTATTGAGAAAGAGTAGAATGGGTTACATTCTT  600

seq1  GCCTTGTTCTGATCTTAGAACAATTCTAGTTTCTTCACATTAAGATTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTTCTGATCTTAGAACAATTCTAGTTTCTTCACATTAAGATTGAG  650

seq1  GTTAGTTGCTAGGTGGTAGTGCACACCTTTAACCCCAGCACTTGGAAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTGCTAGGTGGTAGTGCACACCTTTAACCCCAGCACTTGGAAGGC  700

seq1  AGAGGTAGGCAGATCTCTTGTCAGTTTGAAGCTACTGAGACCCTGTCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAGGCAGATCTCTTGTCAGTTTGAAGCTACTGAGACCCTGTCTCA  750

seq1  AAATAAATAAATAAATAAATAAAATAAATAAATAAATAAAAAATAAAAGA  800
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAATAAATAAATAAATAAATAATATAAATAAATAAATAAAAAATAAAAGA  800

seq1  ATGATGCTAGCTGTAGGTTTTTGGTAGGTATTCTTTTTTTTTAAAAGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCTAGCTGTAGGTTTTTGGTAGGTATTCTTTTTTTTTAAAAGAGT  850

seq1  TTATACTTTTTAAAGTTACG-TTTTATTT-GGGGTTTGAGTGACACTGTA  898
      || ||||||||||||||||| |||||||| ||||||||||||||||||| 
seq2  TTTTACTTTTTAAAGTTACGTTTTTATTTGGGGGTTTGAGTGACACTGT-  899

seq1  CATGTTGGGGAGTCTTCAGGCTATCTTACAAGCACCTTTTTGTCCGCTAA  948
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  CATGTTGGGGAGTCTTCAGGCTATCTTAC-AGCACCTTTTTGT-CGCTAA  947

seq1  TCTTTTTTATTTTTTTAAACTTTTCATTGGTTCTTTTTGAATTTCACATA  998
      ||||||||| |||||||||| |||||||||||||||| ||| ||||||||
seq2  TCTTTTTTA-TTTTTTAAAC-TTTCATTGGTTCTTTTGGAA-TTCACATA  994

seq1  AT-GTACTCCAATCCCACTCATCTCCCCC-TCCCCTCGTACACAACCTCT  1046
      || |||||| ||||||||||||||||||| |||||||||| |||||   |
seq2  ATGGTACTCAAATCCCACTCATCTCCCCCTTCCCCTCGTA-ACAACTCTT  1043

seq1  ACCTTACAACCTTCCCACAACAGAGGGAAAAAAATCTAAATGTGGAAGCT  1096
      | | ||| ||||| |||||| |||||| ||| ||||| ||||||| ||||
seq2  AGCATAC-ACCTT-CCACAA-AGAGGG-AAATAATCT-AATGTGGGAGCT  1088

seq1  GTACCGTGTCACAGTGTGTCCCGCA-GTGTCCCCTTTTGTCCACACTTCT  1145
      |   || |||   | |||| ||||| |||||||  || ||||||||||||
seq2  G--ACGAGTCCAGGGGTGT-CCGCAGGTGTCCC--TTGGTCCACACTTCT  1133

seq1  TTGCTTG  1152
      |||||||
seq2  TTGCTTG  1140