BAC Information

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BAC

Clone NameB6Ng01-163J14
Chromosome9 (Build37)
Map Location 54,700,939 - 54,847,486
singlet/doubletdoublet
Overlap geneIreb2, C630028N24Rik, AY074887, Psma4, Chrna5
Upstream geneSln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1
Downstream geneChrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163J14.bB6Ng01-163J14.g
ACCDH956144DH956145
length1,108448
definitionDH956144|Mus musculus domesticus DNA, BAC clone: B6Ng01-163J14, 5' end.DH956145|Mus musculus domesticus DNA, BAC clone: B6Ng01-163J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,846,378 - 54,847,486)(54,700,939 - 54,701,392)
sequence
gaattcagacattcatgtacaaacacggcatcactataagactagacaag
tttatgcaagtaaattataggaggatttgagagaaaagcagtcagcaaaa
tcatatcaaaaacacatgccaggggctggagagctggctcagtgggtaag
agcatttgttgttcttgtaggggacctgggttcaactcccagtcccacac
agaggttcaccatgcccttaggcaccagacatgctcgtgatgcacagaaa
cgtatgcagccaaagcactcatatgcacaaaataaaataaagaaataaga
atcccaaatttgtaaaacaggcacaagggaaaaaatggcaagaaatacaa
cacattgtattttttaaaatacagggtctcaggactggctcaaactctct
gtgcagcagaggataacccagaactcatgattctcctgatttaacctcca
aagtgctgggattatatgtgtgaaccccgctcctacctcactatcaattg
ttaacattagtcaccaatggacggtagaacacgaatctgtttatttgtac
atttttacactttaaaaaccctctaaaaatcatgtgttacttctgtaatc
ataacataaaggcacactagtgttacttttaatataagtaaatatttgtt
cattatactaaaaacaattgttggcattatcagaccaagaagaaattagt
tttgaaagtgtgagtttcttagggtaaacagagaagcaggtaattcaccc
ctgatgaacaacacataaaatctctctggaaatattgttttatttatgtg
tatcagtgctttgcctgcaagtatgtatgtgcaccatgtgcatgcctggt
gcctatggaggtcagaagaggacaccagatcccctaaaatgggggttgcc
agtggatgtgaccactatgtagtgctgggaagcaactctaggtcctccgc
aagagcagtcttaacctctgagtgctccctcctgatatgtttgaagtatg
attttttttcttgagacaggttttctttgtttagccctagctattcctgg
acccgatttgtagaacaggctgggcttgaactctagagatcacctgcttt
ctgcctcc
caggacagccagggctatacagagaaatcctgtctcgaaaaaaaaaaaat
tgtcacatgctattttagtgcattagaaaggctgactctggagctggact
ttggccttcactttcctgacccaagcatgcttgcttaaaagttttgttgt
gccctgagtccatgggaaacccagacgagaccaagaattgcaaagtccgc
tgcaactcacaaaagagtcttttattgtttcaagttcgaacttggattgc
ctgccttgcactcactgtgtgaatgttggcaagcgaccctgagtccagaa
aacactggatttatatacagtatataaatatactgggtttatatacagta
tagttaggaatcttgtgaatgttcacagaaaaggggagtagagggctgta
atcatttggtggaattgtactgaagcgggagtgggagtgggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_54846378_54847486
seq2: B6Ng01-163J14.b_43_1150 (reverse)

seq1  GGAGGCAG-AAGCAGGTGGATCTCT-GAGTTCAAGGCCAGCCTGGTCTAC  48
      |||||||| |||||||| ||||||| ||||||||| |||||||| |||||
seq2  GGAGGCAGAAAGCAGGT-GATCTCTAGAGTTCAAGCCCAGCCTGTTCTAC  49

seq1  AAATCGTGTTCCAGG-ATAGCTAGGGCTAAACAGAGAAACCTTGTCTCAA  97
      |||||| | |||||| ||||||||||||||||| ||||| | ||||||||
seq2  AAATCG-GGTCCAGGAATAGCTAGGGCTAAACAAAGAAAACCTGTCTCAA  98

seq1  GAAAAAAAAATCATACTTCAAACATATCAGGAGGGAGCACTCAGAGGTTA  147
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-AAAAAAAATCATACTTCAAACATATCAGGAGGGAGCACTCAGAGGTTA  147

seq1  AGACTGCTCTTGCGGAGGACCTAGAGTTGCTTCCCAGCACCTACATAGTG  197
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGACTGCTCTTGCGGAGGACCTAGAGTTGCTTCCCAGCA-CTACATAGTG  196

seq1  GTCACATCCACTGGCAACCCCCATTTTAGGGGATCTGGTGTCCTCTTCTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATCCACTGGCAACCCCCATTTTAGGGGATCTGGTGTCCTCTTCTG  246

seq1  ACCTCCATAGGCACCAGGCATGCACATGGTGCACATACATACTTGCAGGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCATAGGCACCAGGCATGCACATGGTGCACATACATACTTGCAGGC  296

seq1  AAAGCACTGATACACATAAATAAAACAATATTTCCAGAGAGATTTTATGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTGATACACATAAATAAAACAATATTTCCAGAGAGATTTTATGT  346

seq1  GTTGTTCATCAGGGGTGAATTACCTGCTTCTCTGTTTACCCTAAGAAACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCATCAGGGGTGAATTACCTGCTTCTCTGTTTACCCTAAGAAACT  396

seq1  CACACTTTCAAAACTAATTTCTTCTTGGTCTGATAATGCCAACAATTGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTTCAAAACTAATTTCTTCTTGGTCTGATAATGCCAACAATTGTT  446

seq1  TTTAGTATAATGAACAAATATTTACTTATATTAAAAGTAACACTAGTGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTATAATGAACAAATATTTACTTATATTAAAAGTAACACTAGTGTG  496

seq1  CCTTTATGTTATGATTACAGAAGTAACACATGATTTTTAGAGGGTTTTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATGTTATGATTACAGAAGTAACACATGATTTTTAGAGGGTTTTTA  546

seq1  AAGTGTAAAAATGTACAAATAAACAGATTCGTGTTCTACCGTCCATTGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAAAAATGTACAAATAAACAGATTCGTGTTCTACCGTCCATTGGT  596

seq1  GACTAATGTTAACAATTGATAGTGAGGTAGGAGCGGGGTTCACACATATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATGTTAACAATTGATAGTGAGGTAGGAGCGGGGTTCACACATATA  646

seq1  ATCCCAGCACTTTGGAGGTTAAATCAGGAGAATCATGAGTTCTGGGTTAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCACTTTGGAGGTTAAATCAGGAGAATCATGAGTTCTGGGTTAT  696

seq1  CCTCTGCTGCACAGAGAGTTTGAGCCAGTCCTGAGACCCTGTATTTTAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTGCACAGAGAGTTTGAGCCAGTCCTGAGACCCTGTATTTTAAA  746

seq1  AAATACAATGTGTTGTATTTCTTGCCATTTTTTCCCTTGTGCCTGTTTTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAATGTGTTGTATTTCTTGCCATTTTTTCCCTTGTGCCTGTTTTA  796

seq1  CAAATTTGGGATTCTTATTTCTTTATTTTATTTTGTGCATATGAGTGCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTGGGATTCTTATTTCTTTATTTTATTTTGTGCATATGAGTGCTT  846

seq1  TGGCTGCATACGTTTCTGTGCATCACGAGCATGTCTGGTGCCTAAGGGCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCATACGTTTCTGTGCATCACGAGCATGTCTGGTGCCTAAGGGCA  896

seq1  TGGTGAACCTCTGTGTGGGACTGGGAGTTGAACCCAGGTCCCCTACAAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAACCTCTGTGTGGGACTGGGAGTTGAACCCAGGTCCCCTACAAGA  946

seq1  ACAACAAATGCTCTTACCCACTGAGCCAGCTCTCCAGCCCCTGGCATGTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAATGCTCTTACCCACTGAGCCAGCTCTCCAGCCCCTGGCATGTG  996

seq1  TTTTTGATATGATTTTGCTGACTGCTTTTCTCTCAAATCCTCCTATAATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGATATGATTTTGCTGACTGCTTTTCTCTCAAATCCTCCTATAATT  1046

seq1  TACTTGCATAAACTTGTCTAGTCTTATAGTGATGCCGTGTTTGTACATGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCATAAACTTGTCTAGTCTTATAGTGATGCCGTGTTTGTACATGA  1096

seq1  ATGTCTGAATTC  1109
      ||||||||||||
seq2  ATGTCTGAATTC  1108

seq1: chr9_54700939_54701392
seq2: B6Ng01-163J14.g_68_521

seq1  GAATTCCAGGACAGCCAGGGCTATACAGAGAAATCCTGTCTCGAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATACAGAGAAATCCTGTCTCGAAAAAAA  50

seq1  AAAAATTGTCACATGCTATTTTAGTGCATTAGAAAGGCTGACTCTGGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGTCACATGCTATTTTAGTGCATTAGAAAGGCTGACTCTGGAGC  100

seq1  TGGACTTTGGCCTTCACTTTCCTGACCCAAGCATGCTTGCTTAAAAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTTGGCCTTCACTTTCCTGACCCAAGCATGCTTGCTTAAAAGTTT  150

seq1  TGTTGTGCCCTGAGTCCATGGGAAACCCAGACGAGACCAAGAATTGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGCCCTGAGTCCATGGGAAACCCAGACGAGACCAAGAATTGCAAA  200

seq1  GTCCGCTGCAACTCACAAAAGAGTCTTTTATTGTTTCAAGTTCGAACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGCTGCAACTCACAAAAGAGTCTTTTATTGTTTCAAGTTCGAACTTG  250

seq1  GATTGCCTGCCTTGCACTCACTGTGTGAATGTTGGCAAGCGACCCTGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCTGCCTTGCACTCACTGTGTGAATGTTGGCAAGCGACCCTGAGT  300

seq1  CCAGAAAACACTGGATTTATATACAGTATATAAATATACTGGGTTTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAACACTGGATTTATATACAGTATATAAATATACTGGGTTTATAT  350

seq1  ACAGTATAGTTAGGAATCTTGTGAATGTTCACAGAAAAGGGGAGTAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATAGTTAGGAATCTTGTGAATGTTCACAGAAAAGGGGAGTAGAGG  400

seq1  GCTGTAATCATTTGGTGGAATTGTACTGAAGCGGGAGTGGGAGTGGGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAATCATTTGGTGGAATTGTACTGAAGCGGGAGTGGGAGTGGGGGT  450

seq1  GGGG  454
      ||||
seq2  GGGG  454