BAC Information

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BAC

Clone NameB6Ng01-163L05
Chromosome9 (Build37)
Map Location 21,637,593 - 21,801,878
singlet/doubletdoublet
Overlap geneDock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik
Upstream geneA230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25
Downstream genePrkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163L05.bB6Ng01-163L05.g
ACCDH956220DH956221
length1,109853
definitionDH956220|Mus musculus domesticus DNA, BAC clone: B6Ng01-163L05, 5' end.DH956221|Mus musculus domesticus DNA, BAC clone: B6Ng01-163L05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,637,593 - 21,638,708)(21,801,026 - 21,801,878)
sequence
gaattcctcgtagaattcaggagacctggtaagacaaggccagggtccgg
gggccagctaaagaagggatcttacgggatgactccctgcctcaacttac
ctcatctgcatactgaaacttaagcctctgctcttcctgcttcatgcata
tactctccctacactcggccacccgaccccctcagcccatgtctccggcc
cccagccctgcatacttgttgtgatagaccactggtgtgaaggcctctcg
ggtgaattcgctgcagctagatttcccaaagatgacctgtgggagtgggg
acatgagggacccactggggaaaacctatccctgctccatcccccgtccc
tccagggcaaggtcactgcactgaccggcaaggcctggctctggtcttca
ccggccatgtactggatccgcacagccaggttgcgcacagagccctggcg
actgctgaaattgaggctgtgtgggtacacgaagagcaggttcctggaaa
aggaggggtggagggacggaggaccctttagagggctggtgacacacagt
catgggagagatggacatgaagcacatgcatggaaaacagggtgggctgt
gaccccaggtgacacagacagtgggtggaacctctgtatgcacacatcta
gctagattcagggagctacaaggccaggcacagatgggtgctgagagtca
gaggtgtttttgtttttgttttgtttttctaattcaaggtcatcctggtc
tacatagcaagttctaggtcagccaaagctacatagggaaatcttctctc
agcaaaaccaaaacaactaatacccgagacagggtctcatcttgctcagg
gcagatctgagtttgctatttagccctagaaaggactttaaggtcttaac
ttcctgtctcaacctcagagtgctgggtgacaggcatatcagtactgggg
gtggaaccaaggctttgtgcacactaggcagtactctactacttgagccc
tgcttccagtccctgaggcagagtctggagaattggctcagcagtaaggg
tacgcacctgctctttgaaggatccatgttcagtcacagcacccacttcg
agtcagctc
gaattcactctgcagcccaggcttcctagcaagacctgaagaccagactt
gtaggggctctcagtcaggagagatggttcaggagttaatagagcatatt
gctcttgcagagaacccaagttagatttcaagcacccacttgaggctgct
catgcctggatataactctagctcctcatctaatggctctgtcctctgag
gacaatgcacacatttgcacatacacataattaaatattaaatatggaaa
cacatttttacaaagaaagcggagctgggtggtggtgatgcacccagcac
tcaggaggcagagacaggtggatctctgtgagtttgaggccagcctggtt
aacagagaaacttctaagacagccacagctacacagagaaaccttgccaa
aaaacaaaaacaaaaacaaaacaaccagagaagttgagcactgagaccaa
aagactggaaaagatgtaaacccacaaagccctccagttctgaccagctc
ttgcatcaggggtcattttccctcctgagaataccagaggccccacctgg
acagccttcctgatagatggtcttccttcagctacgcccctctccaggga
gccaggcaggagctgcatatgggtgttgtcccctgggacacaggcacagc
agcccagtatatttgtgttgaggttaccagttggtgtggccagatgaggt
cctggcactgcagtggagtttggcagcctgagtataggtgatgccaggaa
cccacctcttgtgcagtgagactcaccctgtggccacatgccaattccag
tactgcatcagctaatctttatgagagagagagggagagggagaggggga
ggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_21637593_21638708
seq2: B6Ng01-163L05.b_47_1155

seq1  GAATTCCTCGTAGAATTCAGGAGACCTGGTAAGACAAGGCCAGGGTCCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCGTAGAATTCAGGAGACCTGGTAAGACAAGGCCAGGGTCCGG  50

seq1  GGGCCAGCTAAAGAAGGGATCTTACGGGATGACTCCCTGCCTCAACTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGCTAAAGAAGGGATCTTACGGGATGACTCCCTGCCTCAACTTAC  100

seq1  CTCATCTGCATACTGAAACTTAAGCCTCTGCTCTTCCTGCTTCATGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTGCATACTGAAACTTAAGCCTCTGCTCTTCCTGCTTCATGCATA  150

seq1  TACTCTCCCTACACTCGGCCACCCGACCCCCTCAGCCCATGTCTCCGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCCCTACACTCGGCCACCCGACCCCCTCAGCCCATGTCTCCGGCC  200

seq1  CCCAGCCCTGCATACTTGTTGTGATAGACCACTGGTGTGAAGGCCTCTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCTGCATACTTGTTGTGATAGACCACTGGTGTGAAGGCCTCTCG  250

seq1  GGTGAATTCGCTGCAGCTAGATTTCCCAAAGATGACCTGTGGGAGTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATTCGCTGCAGCTAGATTTCCCAAAGATGACCTGTGGGAGTGGGG  300

seq1  ACATGAGGGACCCACTGGGGAAAACCTATCCCTGCTCCATCCCCCGTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGGGACCCACTGGGGAAAACCTATCCCTGCTCCATCCCCCGTCCC  350

seq1  TCCAGGGCAAGGTCACTGCACTGACCGGCAAGGCCTGGCTCTGGTCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGCAAGGTCACTGCACTGACCGGCAAGGCCTGGCTCTGGTCTTCA  400

seq1  CCGGCCATGTACTGGATCCGCACAGCCAGGTTGCGCACAGAGCCCTGGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCATGTACTGGATCCGCACAGCCAGGTTGCGCACAGAGCCCTGGCG  450

seq1  ACTGCTGAAATTGAGGCTGTGTGGGTACACGAAGAGCAGGTTCCTGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGAAATTGAGGCTGTGTGGGTACACGAAGAGCAGGTTCCTGGAAA  500

seq1  AGGAGGGGTGGAGGGACGGAGGACCCTTTAGAGGGCTGGTGACACACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGGTGGAGGGACGGAGGACCCTTTAGAGGGCTGGTGACACACAGT  550

seq1  CATGGGAGAGATGGACATGAAGCACATGCATGGAAAACAGGGTGGGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAGAGATGGACATGAAGCACATGCATGGAAAACAGGGTGGGCTGT  600

seq1  GACCCCAGGTGACACAGACAGTGGGTGGAACCTCTGTATGCACACATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAGGTGACACAGACAGTGGGTGGAACCTCTGTATGCACACATCTA  650

seq1  GCTAGATTCAGGGAGCTACAAGGCCAGGCACAGATGGGTGCTGAGAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGATTCAGGGAGCTACAAGGCCAGGCACAGATGGGTGCTGAGAGTCA  700

seq1  GAGGTGTTTTTGTTTTTGTTTTGTTTTTCTAATTCAAGGTCATCCTGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTTTTTGTTTTTGTTTTGTTTTTCTAATTCAAGGTCATCCTGGTC  750

seq1  TACATAGCAAGTTCTAGGTCAGCCAAAGCTACATAGGGAAATCTTCTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGCAAGTTCTAGGTCAGCCAAAGCTACATAGGGAAATCTTCTCTC  800

seq1  AGCAAAACCAAAACAACTAATACCCGAGACAGGGTCTCATCTTGCTCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAACCAAAACAACTAATACCCGAGACAGGGTCTCATCTTGCTCAGG  850

seq1  GCAGATCTGAGTTTGCTATTTAG-CCTAG-AAGGACTTTAAGGTCTTAAC  898
      ||||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  GCAGATCTGAGTTTGCTATTTAGCCCTAGAAAGGACTTTAAGGTCTTAAC  900

seq1  TTCCTGTCTCCACCTCCAGAGTGCTGGGGTGACAGGCATATCAGGTACTG  948
      |||||||||| |||| ||||||||| ||||||||||||||||| ||||||
seq2  TTCCTGTCTCAACCT-CAGAGTGCT-GGGTGACAGGCATATCA-GTACTG  947

seq1  GGGGTGGAACCCAGGGCTTTGTGCACACTAGGCAAGTACTCTACCACCTG  998
      ||||||||| ||| ||||||||||||||||||| |||||||||| || ||
seq2  GGGGTGGAA-CCAAGGCTTTGTGCACACTAGGC-AGTACTCTACTACTTG  995

seq1  AGCCCTGGCTCCAGCCCCCGAGGGCCAGAGGTCTGGAGAAGTGGCTCAGC  1048
      |||||||  ||||| ||| ||||  |||| |||||||||| |||||||||
seq2  AGCCCTGCTTCCAGTCCCTGAGG--CAGA-GTCTGGAGAATTGGCTCAGC  1042

seq1  AGTTAAGGGTACGCA-CTGCTCTTTGAGAGGATCCAAGTTCAGTTCACAG  1097
      || |||||||||||| ||||||||||| |||||||| |||||| ||||||
seq2  AG-TAAGGGTACGCACCTGCTCTTTGA-AGGATCCATGTTCAG-TCACAG  1089

seq1  CACCCACTTC-AGTCAGCTC  1116
      |||||||||| |||||||||
seq2  CACCCACTTCGAGTCAGCTC  1109

seq1: chr9_21801026_21801878
seq2: B6Ng01-163L05.g_69_921 (reverse)

seq1  CCCTCCCCCTCTCCCTCTCCCTCTCTCTCTCATAAAGATTAGCTGATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCCTCTCCCTCTCCCTCTCTCTCTCATAAAGATTAGCTGATGCA  50

seq1  GTACTGGAATTGGCATGTGGCCACAGGGTGAGTCTCACTGCACAAGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGAATTGGCATGTGGCCACAGGGTGAGTCTCACTGCACAAGAGGT  100

seq1  GGGTTCCTGGCATCACCTATACTCAGGCTGCCAAACTCCACTGCAGTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCTGGCATCACCTATACTCAGGCTGCCAAACTCCACTGCAGTGCC  150

seq1  AGGACCTCATCTGGCCACACCAACTGGTAACCTCAACACAAATATACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTCATCTGGCCACACCAACTGGTAACCTCAACACAAATATACTGG  200

seq1  GCTGCTGTGCCTGTGTCCCAGGGGACAACACCCATATGCAGCTCCTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTGCCTGTGTCCCAGGGGACAACACCCATATGCAGCTCCTGCCT  250

seq1  GGCTCCCTGGAGAGGGGCGTAGCTGAAGGAAGACCATCTATCAGGAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCTGGAGAGGGGCGTAGCTGAAGGAAGACCATCTATCAGGAAGGC  300

seq1  TGTCCAGGTGGGGCCTCTGGTATTCTCAGGAGGGAAAATGACCCCTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGGTGGGGCCTCTGGTATTCTCAGGAGGGAAAATGACCCCTGATG  350

seq1  CAAGAGCTGGTCAGAACTGGAGGGCTTTGTGGGTTTACATCTTTTCCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCTGGTCAGAACTGGAGGGCTTTGTGGGTTTACATCTTTTCCAGT  400

seq1  CTTTTGGTCTCAGTGCTCAACTTCTCTGGTTGTTTTGTTTTTGTTTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGTCTCAGTGCTCAACTTCTCTGGTTGTTTTGTTTTTGTTTTTGT  450

seq1  TTTTTGGCAAGGTTTCTCTGTGTAGCTGTGGCTGTCTTAGAAGTTTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGCAAGGTTTCTCTGTGTAGCTGTGGCTGTCTTAGAAGTTTCTCT  500

seq1  GTTAACCAGGCTGGCCTCAAACTCACAGAGATCCACCTGTCTCTGCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACCAGGCTGGCCTCAAACTCACAGAGATCCACCTGTCTCTGCCTCC  550

seq1  TGAGTGCTGGGTGCATCACCACCACCCAGCTCCGCTTTCTTTGTAAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCTGGGTGCATCACCACCACCCAGCTCCGCTTTCTTTGTAAAAAT  600

seq1  GTGTTTCCATATTTAATATTTAATTATGTGTATGTGCAAATGTGTGCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCCATATTTAATATTTAATTATGTGTATGTGCAAATGTGTGCATT  650

seq1  GTCCTCAGAGGACAGAGCCATTAGATGAGGAGCTAGAGTTATATCCAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGAGGACAGAGCCATTAGATGAGGAGCTAGAGTTATATCCAGGC  700

seq1  ATGAGCAGCCTCAAGTGGGTGCTTGAAATCTAACTTGGGTTCTCTGCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAGCCTCAAGTGGGTGCTTGAAATCTAACTTGGGTTCTCTGCAAG  750

seq1  AGCAATATGCTCTATTAACTCCTGAACCATCTCTCCTGACTGAGAGCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATATGCTCTATTAACTCCTGAACCATCTCTCCTGACTGAGAGCCCC  800

seq1  TACAAGTCTGGTCTTCAGGTCTTGCTAGGAAGCCTGGGCTGCAGAGTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTCTGGTCTTCAGGTCTTGCTAGGAAGCCTGGGCTGCAGAGTGAA  850

seq1  TTC  853
      |||
seq2  TTC  853