BAC Information

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BAC

Clone NameB6Ng01-163P20
Chromosome9 (Build37)
Map Location 51,135,367 - 51,310,472
singlet/doubletdoublet
Overlap gene1810046K07Rik, LOC100042854
Upstream geneLOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684
Downstream geneLOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163P20.bB6Ng01-163P20.g
ACCDH956435DH956436
length1,0361,152
definitionDH956435|Mus musculus domesticus DNA, BAC clone: B6Ng01-163P20, 5' end.DH956436|Mus musculus domesticus DNA, BAC clone: B6Ng01-163P20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,135,367 - 51,136,386)(51,309,308 - 51,310,472)
sequence
gaattctttagagaggctaaggaggtgctggtgacatgaagcacggaaat
gaaatgacctggtgagacaaacatccaatcagacctcccctacaacttca
gcaaagacgttccattctgagttctgtaacccaacgacagcacaacgaag
tcagtgggcacagctctgagtcatagctccttacatcactgtatatagtt
ctccagtcactcaaaagagtcaaagaatactgaatgggtgggttgttgat
gggtacaagcctttgtgcttgttccagattctgattgtgagagagaggta
ctgaggtcccaaacagtgcagcaatgatatagtgtgcttggtcattgtca
gggttaactgtccctctgttgtaccttttcctcatcccgccccttggctc
tgtctgcctcactgaggggaaggcagatactctctcagaaacaccggtgc
tgctttctgtgcctctactagaagctttctgtgtgtgcctctgcttccga
tctgggaagcaggggcattagctttattgccaggagaccaccagaggtga
aaagtctccaaggtcatcaagtccaaaagtttgcactattaatcagaaaa
cgatgtcaacggttcatggcatcatcagcttaaagtaaagatgggacatt
tcgaacaggaacagtcaaattactggacatgttgggatttgtgtggaagt
catttcatccacagtggtgacccacaagctctctcatcttctgccctctt
tgcctattagccctttccagggggagtactgactgagctctccctgccag
ctaaggccatgtcatagcaggcaggtgctcttagcactccgtcccaattc
tttaggtttttagaatcatagttgaaagagatacatcacttaaaatgtat
caaggtatttgttcaaagtacttttatattgaaatttaaaaagtattctt
cttgtcattaattaacactaaatatgctaacattgacatctcaaatttgg
ttctgggatcaggtggggttctattttttccaccaa
gaattcaagcactcactccaaggaactgctgaggaaacagaactcagcat
tctgaagacatccgtgtcctgtctgggctgttctctacacacaggctgtg
gaatttgggtgagaagtcactctgcctccattgtctctgctcctggcctt
tcttggaacacagtcatggcccaggggtctatggtgaggttgtttgtctc
tagtctgtttccaggtaccactttagaggtcctgacaccatcataatctc
tcccagagcctgcaatctccttttcatcccttgatcctctgtatccctgg
tctgaagaaaaatatcttctccttgtcttccaagagctcctctttagctc
ttggaccctggtaggctaagtgtattcacgatttggaggaggaaaatact
tgaaataattaactccatgtcagatcagaagcagctcagctcctacataa
ttctcaaagagcacatctttactgctttcttggagcccccttggtataaa
tttcattccccttgctgtactttctagaaacatctgcatacctggtcttt
tgctcaaaaatttcaggtttcaggtttcagatgcatgggagggacaccct
agacccaagcttgggcagattctacctttctgattcctcatacaactcat
ctaaagaaaactaccagtggtctgactagacactggtttgttgcagaccc
ccagatgtacaatagaatcatagcccagctgtgagtatgcactgcaccag
gactcagcagactcatccaagtgctacctcaagccctacctgtgtaaact
caggctggtcccttgtggagaagtttactctgagtagtcacagaaggagc
taggtagaatgcagactcagcaaagactgtttgacgtcatgaggccagaa
tgattccggaggaaggatagtaagcctgatgtgtaaatgagccttagcaa
aaatgagcctaagggctttggttaagtgggttgaggaaagtctgaaagtc
cagcccagaagggctcatgtctagaggaacagggatttgttagcttgaaa
catgatggacctagaagacagaaactttatccttctactatctgactcag
gacccagtccaccagcatctagtattataaccaactacctcaagctgggg
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_51135367_51136386
seq2: B6Ng01-163P20.b_44_1079

seq1  GAATTCTTTAGAGAGGCTAAGGAGGTGCTGGTGACATGAAGCACGGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGAGAGGCTAAGGAGGTGCTGGTGACATGAAGCACGGAAAT  50

seq1  GAAATGACCTGGTGAGACAAACATCCAATCAGACCTCCCCTACAACTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGACCTGGTGAGACAAACATCCAATCAGACCTCCCCTACAACTTCA  100

seq1  GCAAAGACGTTCCATTCTGAGTTCTGTAACCCAACGACAGCACAACGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGACGTTCCATTCTGAGTTCTGTAACCCAACGACAGCACAACGAAG  150

seq1  TCAGTGGGCACAGCTCTGAGTCATAGCTCCTTACATCACTGTATATAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGGCACAGCTCTGAGTCATAGCTCCTTACATCACTGTATATAGTT  200

seq1  CTCCAGTCACTCAAAAGAGTCAAAGAATACTGAATGGGTGGGTTGTTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTCACTCAAAAGAGTCAAAGAATACTGAATGGGTGGGTTGTTGAT  250

seq1  GGGTACAAGCCTTTGTGCTTGTTCCAGATTCTGATTGTGAGAGAGAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACAAGCCTTTGTGCTTGTTCCAGATTCTGATTGTGAGAGAGAGGTA  300

seq1  CTGAGGTCCCAAACAGTGCAGCAATGATATAGTGTGCTTGGTCATTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTCCCAAACAGTGCAGCAATGATATAGTGTGCTTGGTCATTGTCA  350

seq1  GGGTTAACTGTCCCTCTGTTGTACCTTTTCCTCATCCCGCCCCTTGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAACTGTCCCTCTGTTGTACCTTTTCCTCATCCCGCCCCTTGGCTC  400

seq1  TGTCTGCCTCACTGAGGGGAAGGCAGATACTCTCTCAGAAACACCGGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCCTCACTGAGGGGAAGGCAGATACTCTCTCAGAAACACCGGTGC  450

seq1  TGCTTGCTGTGCCTCTACTAGAAGCTTTCTGTGTGTGCCTCTGCTTCCGA  500
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTGTGCCTCTACTAGAAGCTTTCTGTGTGTGCCTCTGCTTCCGA  500

seq1  TCTGGGAAGCAGGGGCATTAGCTTTATTGCCAGGAGACCACCAGAGGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAAGCAGGGGCATTAGCTTTATTGCCAGGAGACCACCAGAGGTGA  550

seq1  AAAGTCTCCAAGGTCATCAAGTCCAAAAGTTTGCACTATTAATCAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTCCAAGGTCATCAAGTCCAAAAGTTTGCACTATTAATCAGAAAA  600

seq1  CGATGTCAACGGTTCATGGCATCATCAGCTTAAAGTAAAGATGGGACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGTCAACGGTTCATGGCATCATCAGCTTAAAGTAAAGATGGGACATT  650

seq1  TCGAACAGGAACAGTCAAATTACTGGACATGTTGGGA-TTGTGTGGAAGT  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCGAACAGGAACAGTCAAATTACTGGACATGTTGGGATTTGTGTGGAAGT  700

seq1  CATTTCATCCACAGTGGTGACCCACAAGCTCTCTCATCTTCTG-CCTC-T  747
      ||||||||||||||||||||||||||||||||||||||||||| |||| |
seq2  CATTTCATCCACAGTGGTGACCCACAAGCTCTCTCATCTTCTGCCCTCTT  750

seq1  TGCCTATTAGCCC-TTCCAGGGGGAGTACTGACTGAGCTCT-CCTGCCAG  795
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  TGCCTATTAGCCCTTTCCAGGGGGAGTACTGACTGAGCTCTCCCTGCCAG  800

seq1  CTAAGGCCATGTCATAGCAGGCAGGTGCTCTGAGCACTCCGTCCCAATTC  845
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTAAGGCCATGTCATAGCAGGCAGGTGCTCTTAGCACTCCGTCCCAATTC  850

seq1  -TTAGG-TTTTAGAATCATAGTTGAAAGAGATACATCACTTAAAATGTAT  893
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTTTTTAGAATCATAGTTGAAAGAGATACATCACTTAAAATGTAT  900

seq1  CAAGTTA-TTGTTCAAAGTAC-TTTATAATG-AATTTAAAAAGTATTCTT  940
      |||| || ||||||||||||| |||||| || ||||||||||||||||||
seq2  CAAGGTATTTGTTCAAAGTACTTTTATATTGAAATTTAAAAAGTATTCTT  950

seq1  C-TGTCATTTATTAACACTTAATATGCTAACATTGACATCTCAAATTT-G  988
      | ||||||| ||||||||| |||||||||||||||||||||||||||| |
seq2  CTTGTCATTAATTAACACTAAATATGCTAACATTGACATCTCAAATTTGG  1000

seq1  TTCT-GGATCAGGT-GGGTTCTA--TTTTACACCAA  1020
      |||| ||||||||| ||||||||  |||| ||||||
seq2  TTCTGGGATCAGGTGGGGTTCTATTTTTTCCACCAA  1036

seq1: chr9_51309308_51310472
seq2: B6Ng01-163P20.g_70_1221 (reverse)

seq1  TCCCCCAGACTTGAGGAAAGTTGGTTAT-ATACTAGAGTGGCTTGTGTGA  49
      |||||||| |||||||  |||||||||| ||||||||   ||| ||| ||
seq2  TCCCCCAG-CTTGAGG-TAGTTGGTTATAATACTAGA--TGCTGGTG-GA  45

seq1  CTGGTTTCTGAGTCAAGATAGGTAGAAGGATAAAGTTCCTGTC-TCTAGA  98
      |||| | ||||||| ||||| |||||||||||||||| ||||| ||||| 
seq2  CTGGGTCCTGAGTC-AGATA-GTAGAAGGATAAAGTTTCTGTCTTCTAG-  92

seq1  GTCCATCCTGTTCTCAGCTTACAAATCCCTGTTCCTCTAAGACATGAGCC  148
      ||||||| ||||   |||| |||||||||||||||||| |||||||||||
seq2  GTCCATCATGTTTCAAGCTAACAAATCCCTGTTCCTCT-AGACATGAGCC  141

seq1  CTTCTGGGCTGGAACTCTCAGACTTTCCTCACCCAACCTTAACCAAAGCC  198
      |||||||||||| ||| |||||||||||||| || | ||||||||||| |
seq2  CTTCTGGGCTGG-ACTTTCAGACTTTCCTCAACCCA-CTTAACCAAAG-C  188

seq1  CCTTAGGCTCATTTTTTGCCTAAGGCTCATTTACACATCAGGCTTACTAT  248
      ||||||||||||||||   |||||||||||||||||||||||||||||||
seq2  CCTTAGGCTCATTTTT--GCTAAGGCTCATTTACACATCAGGCTTACTAT  236

seq1  CCTTCCTCCGGAATCATTCTGGCCTCATGACGTCAAACAGTCTTTGCTGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCCGGAATCATTCTGGCCTCATGACGTCAAACAGTCTTTGCTGA  286

seq1  GTCCTGCATTCTACCTAGCTCCTTCTGTGACTACTCAGAGTAAACTTCTC  348
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GT-CTGCATTCTACCTAGCTCCTTCTGTGACTACTCAGAGTAAACTTCTC  335

seq1  CACAAGGGACCAGCCTGAGTTTACACAGGTAGGGCTTGAGGTAGCACTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGGACCAGCCTGAGTTTACACAGGTAGGGCTTGAGGTAGCACTTG  385

seq1  GATGAGTCTGCTGAGTCCTGGTGCAGTGCATACTCACAGCTGGGCTATGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTCTGCTGAGTCCTGGTGCAGTGCATACTCACAGCTGGGCTATGA  435

seq1  TTCTATTGTACATCTGGGGGTCTGCAACAAACCAGTGTCTAGTCAGACCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTGTACATCTGGGGGTCTGCAACAAACCAGTGTCTAGTCAGACCA  485

seq1  CTGGTAGTTTTCTTTAGATGAGTTGTATGAGGAATCAGAAAGGTAGAATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGTTTTCTTTAGATGAGTTGTATGAGGAATCAGAAAGGTAGAATC  535

seq1  TGCCCAAGCTTGGGTCTAGGGTGTCCCTCCCATGCATCTGAAACCTGAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAGCTTGGGTCTAGGGTGTCCCTCCCATGCATCTGAAACCTGAAA  585

seq1  CCTGAAATTTTTGAGCAAAAGACCAGGTATGCAGATGTTTCTAGAAAGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAATTTTTGAGCAAAAGACCAGGTATGCAGATGTTTCTAGAAAGTA  635

seq1  CAGCAAGGGGAATGAAATTTATACCAAGGGGGCTCCAAGAAAGCAGTAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGGGGAATGAAATTTATACCAAGGGGGCTCCAAGAAAGCAGTAAA  685

seq1  GATGTGCTCTTTGAGAATTATGTAGGAGCTGAGCTGCTTCTGATCTGACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGCTCTTTGAGAATTATGTAGGAGCTGAGCTGCTTCTGATCTGACA  735

seq1  TGGAGTTAATTATTTCAAGTATTTTCCTCCTCCAAATCGTGAATACACTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTAATTATTTCAAGTATTTTCCTCCTCCAAATCGTGAATACACTT  785

seq1  AGCCTACCAGGGTCCAAGAGCTAAAGAGGAGCTCTTGGAAGACAAGGAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACCAGGGTCCAAGAGCTAAAGAGGAGCTCTTGGAAGACAAGGAGA  835

seq1  AGATATTTTTCTTCAGACCAGGGATACAGAGGATCAAGGGATGAAAAGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTTTCTTCAGACCAGGGATACAGAGGATCAAGGGATGAAAAGGA  885

seq1  GATTGCAGGCTCTGGGAGAGATTATGATGGTGTCAGGACCTCTAAAGTGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCAGGCTCTGGGAGAGATTATGATGGTGTCAGGACCTCTAAAGTGG  935

seq1  TACCTGGAAACAGACTAGAGACAAACAACCTCACCATAGACCCCTGGGCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGAAACAGACTAGAGACAAACAACCTCACCATAGACCCCTGGGCC  985

seq1  ATGACTGTGTTCCAAGAAAGGCCAGGAGCAGAGACAATGGAGGCAGAGTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGTGTTCCAAGAAAGGCCAGGAGCAGAGACAATGGAGGCAGAGTG  1035

seq1  ACTTCTCACCCAAATTCCACAGCCTGTGTGTAGAGAACAGCCCAGACAGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCACCCAAATTCCACAGCCTGTGTGTAGAGAACAGCCCAGACAGG  1085

seq1  ACACGGATGTCTTCAGAATGCTGAGTTCTGTTTCCTCAGCAGTTCCTTGG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGATGTCTTCAGAATGCTGAGTTCTGTTTCCTCAGCAGTTCCTTGG  1135

seq1  AGTGAGTGCTTGAATTC  1165
      |||||||||||||||||
seq2  AGTGAGTGCTTGAATTC  1152