BAC Information

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BAC

Clone NameB6Ng01-164N23
Chromosome9 (Build37)
Map Location 7,575,247 - 7,576,315
singlet/doubletsinglet
Overlap geneMmp27
Upstream geneLOC100039400, LOC100039418, EG547034, Dync2h1, LOC100039658, Dcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8
Downstream geneMmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164N23.bB6Ng01-164N23.g
ACCDH957085DH957086
length1,2121,067
definitionDH957085|Mus musculus domesticus DNA, BAC clone: B6Ng01-164N23, 5' end.DH957086|Mus musculus domesticus DNA, BAC clone: B6Ng01-164N23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgagaggaaaactcatagctcttgagtgccttcaaaaagaaac
taaaaatagcatacactagcagcttgatagcacacctaaaagctctagag
caaaagtaaacaaattcacccaagaggagtagatggcaggaaataatcaa
actcaggggcgaaatcaaccaagtggaaacaaaaagaactattcaaagaa
tcaaccaaaggaggagctggttctttgagaaaatcaacaagaaagataaa
cccttagctagactaactagagggcacagggacagcatccaaattaagaa
aatcagaaatgaaaagggagacataacaacagattctgaagaaatccaaa
acaccatcagatccttctacaaaaggctatactcaccaaaactggaaaac
ctggatgaaatgaacaaatttctagacagatatcaaataccaaagttaaa
tcaggatcagattaatgacctaaaaattccaccaaagaactcctaagcct
cataaacagcttcagtgcagtagctggatataaaatgaactcaaacaaat
cagtggcctttctctacacaaatgataaagggactgagaaaaaaattagg
aatcaacacccttcacaataggcacaaataatataaaataccttggtgtg
attctaactaaggaagtgaatgatctgtaggataagaacttcaagtctct
gaaggaagaaattaaagaacatctcagaagatagaaagatctcccatgct
catggattggcagaatcaatatagtgaaaatggctatcttgctgaaagca
atctacagattcaatgtaatccccatcaaaattccaactcaattcttcaa
tgaattagaaagggcaatttgaaaatttatctggaatacaaaaaacctag
gatagcaaaaaatcttctcaatgataaagaatctctggtgtatcaccatt
tcctgacctaatgctgtactgtagagcaattgtgatatagtgaccggtat
agtgattgacaggtagatcagtgaatagaattgagacccagaattgatcc
cacacacctatagtcatctgatctgacggagttaatcatccagtggtaaa
agacgcattttcacaatggtgctgcccactgcgtatcatggagagagtga
tgtccacctttctccgtgtcctagtcacctcagtggaccgagagaaactc
cctcccattaaa
gaattcatctcgacgggcgtggtggcacacgcctttaatcccagcactcc
ggaggcagaggcaggtggatttctgagttcgaggccagcctggtctacaa
agtgagtccaggacagccaggactgcacagagaaaccctgtctcaaaaaa
ccaaaaaaaaaaaaaaaaaaaaaaaaaaagaattcatctcacaacacttt
tcagtagagggcttgacacagtgtatggaggaggagcaatgaacactaaa
tggctaaggatagtcagatggagaaatcttccatttctgcttctggatat
gaaagtgaagcctgttgaagaaagcttgccaatcctgagtttggcaagtg
cttgggctatttcttacaattaattaagcacatatacactggctttggat
caaaatggaaaccaaggaaatagtggttattctgcagtagaagatacaca
tagaagagttcaccccacctctcagttttctgagtgcaatgttcctcctc
cacccctgtctgtaatgctaacatgtggcactggccacagctcatcctag
attcccactgttgcctgaagctcggccagcactgaccgcttcatctgtct
caatagcacttgggagaaaaagaacttcctgtgctctagtggatagaaca
attagggtgtgtctgcaaaaactaaaactgacccaagcagagtattttgg
cctcatggagtcaggaatcatctgtagtcttgtgtgctgcccatcaggaa
ggtcatgacctttacttccctgggatcaggaaggccgtgacttacactgt
cctggaaatcatgggggccagatctccaacccaaattgttgagggacaaa
ggatagtgagaggcgaaagcttcctgagcctcctcctttgcttaataaac
atagaattacttgtagtgagtttggtgtttttgtttaaaagtaacagtac
atcgaagctgagagatgcttagcatttaggggttacagctgtttgttcag
agatgtgagttagtttccagattcacaaacctcttattcaagggattctg
atgtcctctttctgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_7575247_7576315
seq2: B6Ng01-164N23.g_66_1132 (reverse)

seq1  GGCCAG-AAGAGGACATCAGATCCCCTGGAATAAGA-GTTTGTGACTCCT  48
      | |||| ||||||||||||||  |||| |||||||| |||||||| ||  
seq2  GCCCAGAAAGAGGACATCAGAATCCCTTGAATAAGAGGTTTGTGAATC--  48

seq1  GGGAACCTAACTCACATCCTCTGGAACAACAGCTGGTACCCCTAAATGCT  98
       |||| ||||||||||| ||||| |  ||||||||  |||||||||||||
seq2  TGGAAACTAACTCACAT-CTCTGAACAAACAGCTGTAACCCCTAAATGCT  97

seq1  AAGCAATCTCTCCAGCTTCGGTGTACTGTTACTTTTTAAACAAAACACCC  148
      |||| |||||| |||||||| ||||||||||| ||||||||||||   ||
seq2  AAGC-ATCTCT-CAGCTTCGATGTACTGTTAC-TTTTAAACAAAAACACC  144

seq1  AAACTTCACTAC-AGTAATTCTATGTTTATTAAGCAAAGGAGGAGGCTCA  197
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAC-TCACTACAAGTAATTCTATGTTTATTAAGCAAAGGAGGAGGCTCA  193

seq1  GGAAGCTTTCGCCTCTCACTATCCTTTGTCCCTCAACAATTTGGGTTGGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTTTCGCCTCTCACTATCCTTTGTCCCTCAACAATTTGGGTTGGA  243

seq1  GATCTGGCCCCCATGA-TTCCAGGACAGTGTAAGTCACGGCCTTCCTGAT  296
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GATCTGGCCCCCATGATTTCCAGGACAGTGTAAGTCACGGCCTTCCTGAT  293

seq1  CCCAGGGAAGTAAAGGTCATGACCTTCCTGATGGGCAGCACACAAGACTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGAAGTAAAGGTCATGACCTTCCTGATGGGCAGCACACAAGACTA  343

seq1  CAGATGATTCCTGACTCCATGAGGCC-AAATACTCTGCTTGGGTCAGTTT  395
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGATGATTCCTGACTCCATGAGGCCAAAATACTCTGCTTGGGTCAGTTT  393

seq1  TAGTTTTTGCAGACACACCCTAATTGTTCTATCCACTAGAGCACAGGAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTGCAGACACACCCTAATTGTTCTATCCACTAGAGCACAGGAAG  443

seq1  TTCTTTTTCTCCCAAGTGCTATTGAGACAGATGAAGCGGTCAGTGCTGGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCTCCCAAGTGCTATTGAGACAGATGAAGCGGTCAGTGCTGGC  493

seq1  CGAGCTTCAGGCAACAGTGGGAATCTAGGATGAGCTGTGGCCAGTGCCAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTTCAGGCAACAGTGGGAATCTAGGATGAGCTGTGGCCAGTGCCAC  543

seq1  ATGTTAGCATTACAGACAGGGGTGGAGGAGGAACATTGCACTCAGAAAAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGCATTACAGACAGGGGTGGAGGAGGAACATTGCACTCAGAAAAC  593

seq1  TGAGAGGTGGGGTGAACTCTTCTATGTGTATCTTCTACTGCAGAATAACC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGTGGGGTGAACTCTTCTATGTGTATCTTCTACTGCAGAATAACC  643

seq1  ACTATTTCCTTGGTTTCCATTTTGATCCAAAGCCAGTGTATATGTGCTTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTCCTTGGTTTCCATTTTGATCCAAAGCCAGTGTATATGTGCTTA  693

seq1  ATTAATTGTAAGAAATAGCCCAAGCACTTGCCAAACTCAGGATTGGCAAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTGTAAGAAATAGCCCAAGCACTTGCCAAACTCAGGATTGGCAAG  743

seq1  CTTTCTTCAACAGGCTTCACTTTCATATCCAGAAGCAGAAATGGAAGATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCAACAGGCTTCACTTTCATATCCAGAAGCAGAAATGGAAGATT  793

seq1  TCTCCATCTGACTATCCTTAGCCATTTAGTGTTCATTGCTCCTCCTCCAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATCTGACTATCCTTAGCCATTTAGTGTTCATTGCTCCTCCTCCAT  843

seq1  ACACTGTGTCAAGCCCTCTACTGAAAAGTGTTGTGAGATGAATTCTTTTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTGTCAAGCCCTCTACTGAAAAGTGTTGTGAGATGAATTCTTTTT  893

seq1  TTTTTTTTTTTTTTTTTTTTTTGGGTTTTTGAGACAGGGTTTCTCTGTGC  945
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTGC  943

seq1  AGTCCTGGCTGTCCTGGACTCACTTTGTAGACCAGGCTGGCCTCGAACTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGGCTGTCCTGGACTCACTTTGTAGACCAGGCTGGCCTCGAACTC  993

seq1  AGAAATCCACCTGCCTCTGCCTCCGGAGTGCTGGGATTAAAGGCGTGTGC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCACCTGCCTCTGCCTCCGGAGTGCTGGGATTAAAGGCGTGTGC  1043

seq1  CACCACGCCCGTCGAGATGAATTC  1069
      ||||||||||||||||||||||||
seq2  CACCACGCCCGTCGAGATGAATTC  1067