BAC Information

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BAC

Clone NameB6Ng01-164O05
Chromosome9 (Build37)
Map Location 49,888,226 - 50,022,571
singlet/doubletdoublet
Overlap geneEG667975
Upstream geneTmprss5, EG235327, Drd2, Ankk1, Ttc12, Ncam1
Downstream geneLOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164O05.bB6Ng01-164O05.g
ACCDH957097DH957098
length1331,149
definitionDH957097|Mus musculus domesticus DNA, BAC clone: B6Ng01-164O05, 5' end.DH957098|Mus musculus domesticus DNA, BAC clone: B6Ng01-164O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,022,439 - 50,022,571)(49,888,226 - 49,889,284)
sequence
ataatatgagattatggggaaacggtgagaggtaggaagtaggccgtgtt
ctgggaagctgatcactgtgaggagagttttagggtatgtgtgtttgtat
gtgtggtgtgtgtgtctgtgtgtgtgtgtgtgg
gaattcatgtagaagagatttcagaacatacacacagctgtcagaagcct
tgtaaactactaaaaaatatttcaaaaacaacaagaaacagacagctaaa
tagaaaactgtgcagatatcaccagtaggtgactcatgaaagagaatatc
cagatgcccactaaatacttggaaacagagtcaggctcattagtaatcag
tggcatacaaaacaaatctaatgcaaattgaagaacattgtagagcacac
tatccaagatgactaaaattaaaagaaataatcctaatgaatactggtag
agctgcggagtgataggccctcatacaggactggagggtgtgcacactgg
tataatacctctggagaccactttggcacttctactaaagctaatcagac
atagactctattactcaggaactccacatggacgccatgagacacactca
ataatggttctagcagctgtgtttgctatagctccacactggaaccaacc
caaatgtccatcaatagcataatggttcagcaatgtgcactgtgtttaca
gaaaagaacctaacgtggcagacacagtatgtatggatttcacaaacgta
acaagcctactgtgtgacttcattctgggctactcataaacattatagaa
tctagagatgcctgattaagtcataaataagatatgcagataagtgctta
ccataataatctggctagctggcacctctggggaaccaacaagaaggtta
ttctcagtgaacttgagacaactgcatcactggtccaccttagggagatg
aggacagtgagtctgtgggtggctgcttcatgataattaattcacatgtt
cttttgtttcactgcatttcactttttaagatatgttctttctatgttgc
ccatgctatcctcagactcaaatcctcctgtctcagcctctcaaatgcag
gaatttcagcctgttcgcacacatctgggaagctgtacattctttagtca
cttcccatataaatgtaatctatgtaataaattttagaaacaaaaaagag
atacaattggtggaaatagaacggatcctctaaaagacctctcctctcaa
ttaatagacatacttaatcctctagactgaatgccttccaatgaaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_50022439_50022571
seq2: B6Ng01-164O05.b_53_185 (reverse)

seq1  CCACACACACACACACAGACACACACACCACACATACAAACACACATACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACACACACACACAGACACACACACCACACATACAAACACACATACC  50

seq1  CTAAAACTCTCCTCACAGTGATCAGCTTCCCAGAACACGGCCTACTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACTCTCCTCACAGTGATCAGCTTCCCAGAACACGGCCTACTTCCT  100

seq1  ACCTCTCACCGTTTCCCCATAATCTCATATTAT  133
      |||||||||||||||||||||||||||||||||
seq2  ACCTCTCACCGTTTCCCCATAATCTCATATTAT  133

seq1: chr9_49888226_49889284
seq2: B6Ng01-164O05.g_172_1215

seq1  AACTGTGCAGATATCACCAGTAGGTGACTCATGAAAGAGAATATCCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGCAGATATCACCAGTAGGTGACTCATGAAAGAGAATATCCAGAT  50

seq1  GCCCACTAAATACTTGGAAACAGAGTCAGGCTCATTAGTAATCAGTGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTAAATACTTGGAAACAGAGTCAGGCTCATTAGTAATCAGTGGCA  100

seq1  TACAAAACAAATCTAATGCAAATTGAAGAACATTGTAGAGCACACTATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAACAAATCTAATGCAAATTGAAGAACATTGTAGAGCACACTATCC  150

seq1  AAGATGACTAAAATTAAAAGAAATAATCCTAATGAATACTGGTAGAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGACTAAAATTAAAAGAAATAATCCTAATGAATACTGGTAGAGCTG  200

seq1  CGGAGTGATAGGCCCTCATACAGGACTGGAGGGTGTGCACACTGGTATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGTGATAGGCCCTCATACAGGACTGGAGGGTGTGCACACTGGTATAA  250

seq1  TACCTCTGGAGACCACTTTGGCACTTCTACTAAAGCTAATCAGACATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTGGAGACCACTTTGGCACTTCTACTAAAGCTAATCAGACATAGA  300

seq1  CTCTATTACTCAGGAACTCCACATGGACGCCATGAGACACACTCAATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTACTCAGGAACTCCACATGGACGCCATGAGACACACTCAATAAT  350

seq1  GGTTCTAGCAGCTGTGTTTGCTATAGCTCCACACTGGAACCAACCCAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTAGCAGCTGTGTTTGCTATAGCTCCACACTGGAACCAACCCAAAT  400

seq1  GTCCATCAATAGCATAATGGTTCAGCAATGTGCACTGTGTTTACAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCAATAGCATAATGGTTCAGCAATGTGCACTGTGTTTACAGAAAA  450

seq1  GAACCTAACGTGGCAGACACAGTATGTATGGATTTCACAAACGTAACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTAACGTGGCAGACACAGTATGTATGGATTTCACAAACGTAACAAG  500

seq1  CCTACTGTGTGACTTCATTCTGGGCTACTCATAAACATTATAGAATCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGTGTGACTTCATTCTGGGCTACTCATAAACATTATAGAATCTAG  550

seq1  AGATGCCTGATTAAGTCATAAATAAGATATGCAGATAAGTGCTTACCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCTGATTAAGTCATAAATAAGATATGCAGATAAGTGCTTACCATA  600

seq1  ATAATCTGGCTAGCTGGCACCTCTGGGGAACCAACAAGAAGGTTATTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTGGCTAGCTGGCACCTCTGGGGAACCAACAAGAAGGTTATTCTC  650

seq1  AGTGAACTTGAGACAACTGCATCACTGGTCCACCTTAGGGAGATGAGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACTTGAGACAACTGCATCACTGGTCCACCTTAGGGAGATGAGGAC  700

seq1  AGTGAGTCTGTGGGTGGCTGCTTCATGATAATTAATTCACATGTTCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTCTGTGGGTGGCTGCTTCATGATAATTAATTCACATGTTCTTTT  750

seq1  GTTTCACTGCATTTCACTTTTTAAGATATGTTCTTTCTATGTTGCCCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACTGCATTTCACTTTTTAAGATATGTTCTTTCTATGTTGCCCATG  800

seq1  CTATCCTCAGACTCAAAATCCTCCTGTCTCAGCCTCTCAAATGCAGGAAT  850
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTATCCTCAGACTC-AAATCCTCCTGTCTCAGCCTCTCAAATGCAGGAAT  849

seq1  TTCAGCCTGTTCGCCACCACATCTGGGAAGCTGTACATTCTTAAGTCACT  900
      ||||||||||||||   ||||||||||||||||||||||||| |||||||
seq2  TTCAGCCTGTTCGC--ACACATCTGGGAAGCTGTACATTCTTTAGTCACT  897

seq1  TCCCATATAAATGTAATCTATGGTAATAAATATTTAGGAAACAAAAAAGA  950
      ||||||||||||||||||||| ||||||||| |||| |||||||||||||
seq2  TCCCATATAAATGTAATCTAT-GTAATAAAT-TTTA-GAAACAAAAAAGA  944

seq1  GATACAATTGGT-GACATAGACAGGAGCCCCCAAAAGA-CTCTCCTCTCA  998
      |||||||||||| || |||||  ||| || | |||||| |||||||||||
seq2  GATACAATTGGTGGAAATAGAACGGATCCTCTAAAAGACCTCTCCTCTCA  994

seq1  ATTAATAGCAATTTACTTTTTATTCTTCTTTAGACTGAATGGCCCTACCA  1048
      ||||||||  |  |||   ||| ||  || |||||||||||  ||| || 
seq2  ATTAATAG--ACATAC---TTAATC--CTCTAGACTGAATG--CCTTCC-  1034

seq1  AAATGAAAGAA  1059
       ||||||||||
seq2  -AATGAAAGAA  1044