BAC Information

Click to search

BAC

Clone NameB6Ng01-167A24
Chromosome9 (Build37)
Map Location 50,861,259 - 50,861,584
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2
Downstream geneLayn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167A24.bB6Ng01-167A24.g
ACCDH958662DH958663
length1,187992
definitionDH958662|Mus musculus domesticus DNA, BAC clone: B6Ng01-167A24, 5' end.DH958663|Mus musculus domesticus DNA, BAC clone: B6Ng01-167A24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttagttaagatctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattgagtagtagtccc
ctatctgatgtaggataggtaaagatacttttccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgccttacagaagctttgcagtttca
tgaggtcccatttgtcgattctcgatcttacagcacaagacattgctgtt
ctattcaggaattttccccctgtgcccatatctttaaggcttttccctac
tttctcctctacaagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaacttagtacaaggagataggaatggattgattcac
attcttctgcatgttaacaagcagttgtgccagcaccatttgttgaaaat
gcttttttccactggatggttttagctcccttgtcaaagatcaagtgacc
ataggtgtgtgggttcatttctgggtcttcaattatattccattggttta
cttgtctgtcattataccagtaccatgcagtttttatcacaattgctctg
tagtaaagctttaggtcaggcatggtgattccaccagaggttcttttatc
cttgagaacagtttttgctatcctagtttttttgttattgcagatcaatc
tgctgattgcctttctaattcgttgaagaattgagttgaaattttgatgg
ggattgcattgaatctgtagattgcttttggcaagatagccatttttata
atgttgatcctgccaatccatgagcatgggagatctttccatcttctgag
atcttctttaatttctttcttcagagacttgaggttcttatcatacaaat
ctttcacttccttagttagagtcacgccagatattttatattatttgtga
ctattgagatggtgttgttttcctaattctcctcagcctgtttatctttg
tgtagagaagaccattgacttgttgagtatttatatccagctactcaccg
aagattttttttcagttagagttctcttggtgaattttaggttcactagt
atatatttatcatatcatctgcgaagggattggactctccttcattggat
ctcttgaatccctttgtttgcgaaatgggctcgcagc
gaattcaagaagttagactccagagaaccaaatagcctgattaaaaaagg
aggtacatagctaaacaaagaattctcaactgagaaataatacatggctg
agaaacacctaaagaaatgttcaacatccttagtaatcagggaaatgcat
atcaaaacaaccctgagattccacctcaagccactcagattggctaaaat
caaaaattcagatgctggcaaggatatggaaaaagaggaacacgcctcca
ttgctagtgggactgcaagcaggcacaaccacactggaaatcagtttagc
agttcatcagaaaattggacatagatctatcagaagatctagcaatacca
ctcctgaacatatacccagaagatgctccaacatataaggacacatgctc
cactatgtttatacaagccttatttataatagccagaagctggaaagaac
ccagatgttcctcaacagaggaatggatagagaaaatgtggcacatttaa
acaatggaggtctactcagctattaaaaagaatgagtttatgaaattctt
agacaatggatggatctggaggatatcatcttgagtgaggtaacccaatc
acaaaagaacacacatggtatgcacacacttaaaaataaaaaataataat
tttaagtatgtatataatcatttaacttaataatcttaaagttaagtatt
tgatccagagatattaatatttatgttcatacaattaatcattgtacaag
aatgtttacagtcactttcctcattaaaactcagaaaagcactccctcac
atggaaccaataaaatgaacacaaaatgttgagtagaatgttaggcaatg
attaggtcaatgaccaggcaatagcaggaaatgtatgagatcagcaagtg
tctgatctctcagcaaaagctgagattgagcaggcaagacagaaactgga
tcctgtaagatgggaggaaatagcagagttcagtgggtgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_50861259_50861584
seq2: B6Ng01-167A24.g_365_686 (reverse)

seq1  CATATCATGTGAGTTCTTTTGTGATTGGGTTACCTCATTCAGGATGATGC  50
      |||| |||||| ||||||||||||||||||||||||| ||| ||||||  
seq2  CATACCATGTGTGTTCTTTTGTGATTGGGTTACCTCACTCAAGATGATAT  50

seq1  CCTCCAGGTCCATCCATTTGCCTAGAAATTTCATAAATTCATTCTTTTTA  100
      ||||||| |||||||| ||| |||  ||||||||||| ||||||||||||
seq2  CCTCCAGATCCATCCA-TTGTCTAAGAATTTCATAAACTCATTCTTTTTA  99

seq1  ATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGTATCCA  150
      ||||||||||||  ||||||||| ||||||| ||||||||||| ||||||
seq2  ATAGCTGAGTAGACCTCCATTGTTTAAATGTGCCACATTTTCTCTATCCA  149

seq1  TTCCTCTGTTGAGGGGCATCTAGGTTCTTTCCAGCTTCTGGCTATTATAA  200
      ||||||||||||||  ||||| ||||||||||||||||||||||||||||
seq2  TTCCTCTGTTGAGGAACATCTGGGTTCTTTCCAGCTTCTGGCTATTATAA  199

seq1  ATAAGGCTGCTATGAACATAGTGGAACATGTGTCTTTCTTACCCGTTGGA  250
      ||||||||  ||| ||||||||||| ||||||||   ||||   ||||||
seq2  ATAAGGCTTGTATAAACATAGTGGAGCATGTGTC---CTTATATGTTGGA  246

seq1  ACATCTTCTGGATATATGCCCAGGAGAGGTATTGCAGGATCCTCCAGTAG  300
       |||||||||| ||||||  |||||| ||||||||  |||| ||   |||
seq2  GCATCTTCTGGGTATATGTTCAGGAGTGGTATTGCTAGATCTTCTGATAG  296

seq1  TACTATGTCCAATTTTCTGAGGAACT  326
        |||||||||||||||||| |||||
seq2  ATCTATGTCCAATTTTCTGATGAACT  322